Analysis of Ligand-Protein Contacts in PDB entry:
9SMI


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 71 ligands in PDB entry 9SMI. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
FME
A
1 10N-FORMYLMETHIONINE
lig 2
ARO
B
77 12C-GAMMA-HYDROXY ARGININE
lig 3
2MR
D
85 13N3, N4-DIMETHYLARGININE
lig 4
FME
H
1 10N-FORMYLMETHIONINE
lig 5
FME
J
1 10N-FORMYLMETHIONINE
lig 6
FME
K
1 10N-FORMYLMETHIONINE
lig 7
FME
L
1 10N-FORMYLMETHIONINE
lig 8
FME
M
1 10N-FORMYLMETHIONINE
lig 9
FME
N
1 10N-FORMYLMETHIONINE
lig 10
ACE
Y
1 3ACETYL GROUP
lig 11
ACE
i
1 3ACETYL GROUP
lig 12
ACE
r
1 3ACETYL GROUP
lig 13
3PE
A
201 471,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 14
3PE
A
202 351,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 15
PC1
B
201 501,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 16
SF4
B
202 8IRON/SULFUR CLUSTER
lig 17
PC1
B
203 471,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 18
LMT
D
501 35DODECYL-BETA-D-MALTOSIDE
lig 19
3PE
D
502 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 20
FES
E
301 4FE2/S2 (INORGANIC) CLUSTER
lig 21
FMN
F
501 31FLAVIN MONONUCLEOTIDE
lig 22
SF4
F
502 8IRON/SULFUR CLUSTER
lig 23
NAI
F
503 441,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTI
lig 24
SF4
G
801 8IRON/SULFUR CLUSTER
lig 25
SF4
G
802 8IRON/SULFUR CLUSTER
lig 26
FES
G
803 4FE2/S2 (INORGANIC) CLUSTER
lig 27
K
G
804 1POTASSIUM ION
lig 28
3PE
H
401 381,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 29
3PE
H
402 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 30
SF4
I
201 8IRON/SULFUR CLUSTER
lig 31
SF4
I
202 8IRON/SULFUR CLUSTER
lig 32
3PE
I
203 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 33
PC1
J
201 481,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 34
3PE
K
101 481,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 35
3PE
L
701 421,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 36
CDL
L
702 71CARDIOLIPIN
lig 37
3PE
L
703 451,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 38
CHD
L
704 29CHOLIC ACID
lig 39
3PE
L
705 441,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 40
3PE
M
601 451,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 41
3PE
M
602 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 42
PC1
M
603 461,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 43
3PE
M
604 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 44
PC1
M
605 461,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 45
3PE
M
606 411,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 46
CDL
N
401 86CARDIOLIPIN
lig 47
PC1
N
402 351,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 48
3PE
N
403 391,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 49
DGT
O
401 312'-DEOXYGUANOSINE-5'-TRIPHOSPHATE
lig 50
MG
O
402 1MAGNESIUM ION
lig 51
NDP
P
501 48 PHOSPHATE
lig 52
ZN
R
201 1ZINC ION
lig 53
EHZ
T
101 37 (3~{S})-3-OXIDANYLTETRADECANETHIOATE
lig 54
EHZ
U
101 37 (3~{S})-3-OXIDANYLTETRADECANETHIOATE
lig 55
3PE
X
201 381,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 56
3PE
Y
201 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 57
3PE
Y
202 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 58
3PE
Y
203 391,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 59
3PE
Y
204 411,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 60
3PE
Y
205 451,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 61
3PE
Z
201 431,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 62
3PE
Z
202 331,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 63
3PE
d
201 491,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 64
PC1
d
202 461,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 65
CDL
d
203 65CARDIOLIPIN
lig 66
CDL
h
201 68CARDIOLIPIN
lig 67
3PE
h
202 381,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 68
3PE
h
203 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 69
3PE
m
201 411,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 70
MYR
o
201 15MYRISTIC ACID
lig 71
CDL
q
201 64CARDIOLIPIN