Analysis of Ligand-Protein Contacts in PDB entry:
9SOD


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 27 ligands in PDB entry 9SOD. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
FME
A
1 10N-FORMYLMETHIONINE
lig 2
OLC
A
401 16(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 3
97N
A
402 23(2S)-2,3-DIHYDROXYPROPYL (9Z)-HEXADEC-9-EN
lig 4
LFA
A
403 12EICOSANE
lig 5
LFA
A
404 12EICOSANE
lig 6
LFA
A
405 12EICOSANE
lig 7
LFA
A
406 15EICOSANE
lig 8
LFA
A
407 16EICOSANE
lig 9
LFA
A
408 5EICOSANE
lig 10
LFA
A
409 5EICOSANE
lig 11
LFA
A
410 6EICOSANE
lig 12
LFA
A
411 18EICOSANE
lig 13
LFA
A
412 8EICOSANE
lig 14
LFA
A
413 5EICOSANE
lig 15
LFA
A
414 5EICOSANE
lig 16
LFA
A
415 14EICOSANE
lig 17
GOL
A
416 6GLYCEROL
lig 18
GOL
A
417 6GLYCEROL
lig 19
GOL
A
418 6GLYCEROL
lig 20
OLC
A
419 11(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 21
OLC
A
420 18(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 22
OLC
A
421 9(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 23
OLC
A
422 16(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 24
OLC
A
423 16(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 25
NA
A
424 1SODIUM ION
lig 26
CA
A
425 1CALCIUM ION
lig 27
RET
A
426 20RETINAL