Analysis of Ligand-Protein Contacts in PDB entry:
9VB8


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 108 ligands in PDB entry 9VB8. Click on ligand of interest for LPC analysis.


HET
ID
Chain
ID
Residue
N
Number
of atoms
Ligand name
lig 1
ACE
B
1 3ACETYL GROUP
lig 2
HYP
B
4 84-HYDROXYPROLINE
lig 3
HYP
B
7 84-HYDROXYPROLINE
lig 4
HYP
B
10 84-HYDROXYPROLINE
lig 5
HYP
B
13 84-HYDROXYPROLINE
lig 6
HYP
B
19 84-HYDROXYPROLINE
lig 7
HYP
B
22 84-HYDROXYPROLINE
lig 8
HYP
B
25 84-HYDROXYPROLINE
lig 9
NH2
B
26 1AMINO GROUP
lig 10
ACE
C
1 3ACETYL GROUP
lig 11
HYP
C
4 84-HYDROXYPROLINE
lig 12
HYP
C
7 84-HYDROXYPROLINE
lig 13
HYP
C
10 84-HYDROXYPROLINE
lig 14
HYP
C
13 84-HYDROXYPROLINE
lig 15
HYP
C
19 84-HYDROXYPROLINE
lig 16
HYP
C
22 84-HYDROXYPROLINE
lig 17
HYP
C
25 84-HYDROXYPROLINE
lig 18
NH2
C
26 1AMINO GROUP
lig 19
ACE
D
1 3ACETYL GROUP
lig 20
HYP
D
4 84-HYDROXYPROLINE
lig 21
HYP
D
7 84-HYDROXYPROLINE
lig 22
HYP
D
10 84-HYDROXYPROLINE
lig 23
HYP
D
13 84-HYDROXYPROLINE
lig 24
HYP
D
19 84-HYDROXYPROLINE
lig 25
HYP
D
22 84-HYDROXYPROLINE
lig 26
HYP
D
25 84-HYDROXYPROLINE
lig 27
NH2
D
26 1AMINO GROUP
lig 28
ACE
F
1 3ACETYL GROUP
lig 29
HYP
F
4 84-HYDROXYPROLINE
lig 30
HYP
F
7 84-HYDROXYPROLINE
lig 31
HYP
F
10 84-HYDROXYPROLINE
lig 32
HYP
F
13 84-HYDROXYPROLINE
lig 33
HYP
F
19 84-HYDROXYPROLINE
lig 34
HYP
F
22 84-HYDROXYPROLINE
lig 35
HYP
F
25 84-HYDROXYPROLINE
lig 36
NH2
F
26 1AMINO GROUP
lig 37
ACE
G
1 3ACETYL GROUP
lig 38
HYP
G
4 84-HYDROXYPROLINE
lig 39
HYP
G
7 84-HYDROXYPROLINE
lig 40
HYP
G
10 84-HYDROXYPROLINE
lig 41
HYP
G
13 84-HYDROXYPROLINE
lig 42
HYP
G
19 84-HYDROXYPROLINE
lig 43
HYP
G
22 84-HYDROXYPROLINE
lig 44
HYP
G
25 84-HYDROXYPROLINE
lig 45
NH2
G
26 1AMINO GROUP
lig 46
ACE
H
1 3ACETYL GROUP
lig 47
HYP
H
4 84-HYDROXYPROLINE
lig 48
HYP
H
7 84-HYDROXYPROLINE
lig 49
HYP
H
10 84-HYDROXYPROLINE
lig 50
HYP
H
13 84-HYDROXYPROLINE
lig 51
HYP
H
19 84-HYDROXYPROLINE
lig 52
HYP
H
22 84-HYDROXYPROLINE
lig 53
HYP
H
25 84-HYDROXYPROLINE
lig 54
NH2
H
26 1AMINO GROUP
lig 55
ACE
J
1 3ACETYL GROUP
lig 56
HYP
J
4 84-HYDROXYPROLINE
lig 57
HYP
J
7 84-HYDROXYPROLINE
lig 58
HYP
J
10 84-HYDROXYPROLINE
lig 59
HYP
J
13 84-HYDROXYPROLINE
lig 60
HYP
J
19 84-HYDROXYPROLINE
lig 61
HYP
J
22 84-HYDROXYPROLINE
lig 62
HYP
J
25 84-HYDROXYPROLINE
lig 63
NH2
J
26 1AMINO GROUP
lig 64
ACE
K
1 3ACETYL GROUP
lig 65
HYP
K
4 84-HYDROXYPROLINE
lig 66
HYP
K
7 84-HYDROXYPROLINE
lig 67
HYP
K
10 84-HYDROXYPROLINE
lig 68
HYP
K
13 84-HYDROXYPROLINE
lig 69
HYP
K
19 84-HYDROXYPROLINE
lig 70
HYP
K
22 84-HYDROXYPROLINE
lig 71
HYP
K
25 84-HYDROXYPROLINE
lig 72
NH2
K
26 1AMINO GROUP
lig 73
ACE
L
1 3ACETYL GROUP
lig 74
HYP
L
4 84-HYDROXYPROLINE
lig 75
HYP
L
7 84-HYDROXYPROLINE
lig 76
HYP
L
10 84-HYDROXYPROLINE
lig 77
HYP
L
13 84-HYDROXYPROLINE
lig 78
HYP
L
19 84-HYDROXYPROLINE
lig 79
HYP
L
22 84-HYDROXYPROLINE
lig 80
HYP
L
25 84-HYDROXYPROLINE
lig 81
NH2
L
26 1AMINO GROUP
lig 82
ACE
N
1 3ACETYL GROUP
lig 83
HYP
N
4 84-HYDROXYPROLINE
lig 84
HYP
N
7 84-HYDROXYPROLINE
lig 85
HYP
N
10 84-HYDROXYPROLINE
lig 86
HYP
N
13 84-HYDROXYPROLINE
lig 87
HYP
N
19 84-HYDROXYPROLINE
lig 88
HYP
N
22 84-HYDROXYPROLINE
lig 89
HYP
N
25 84-HYDROXYPROLINE
lig 90
NH2
N
26 1AMINO GROUP
lig 91
ACE
O
1 3ACETYL GROUP
lig 92
HYP
O
4 84-HYDROXYPROLINE
lig 93
HYP
O
7 84-HYDROXYPROLINE
lig 94
HYP
O
10 84-HYDROXYPROLINE
lig 95
HYP
O
13 84-HYDROXYPROLINE
lig 96
HYP
O
19 84-HYDROXYPROLINE
lig 97
HYP
O
22 84-HYDROXYPROLINE
lig 98
HYP
O
25 84-HYDROXYPROLINE
lig 99
NH2
O
26 1AMINO GROUP
lig 100
ACE
P
1 3ACETYL GROUP
lig 101
HYP
P
4 84-HYDROXYPROLINE
lig 102
HYP
P
7 84-HYDROXYPROLINE
lig 103
HYP
P
10 84-HYDROXYPROLINE
lig 104
HYP
P
13 84-HYDROXYPROLINE
lig 105
HYP
P
19 84-HYDROXYPROLINE
lig 106
HYP
P
22 84-HYDROXYPROLINE
lig 107
HYP
P
25 84-HYDROXYPROLINE
lig 108
NH2
P
26 1AMINO GROUP