Analysis of Ligand-Protein Contacts in PDB entry:
9VBX


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 24 ligands in PDB entry 9VBX. Click on ligand of interest for LPC analysis.


HET
ID
Chain
ID
Residue
N
Number
of atoms
Ligand name
lig 1
MAN
b
1 12ALPHA-D-MANNOPYRANOSE
lig 2
NAG
b
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
FUC
b
3 10ALPHA-L-FUCOPYRANOSE
lig 4
GAL
b
4 11BETA-D-GALACTOPYRANOSE
lig 5
MAN
c
1 12ALPHA-D-MANNOPYRANOSE
lig 6
NAG
c
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
FUC
c
3 10ALPHA-L-FUCOPYRANOSE
lig 8
GAL
c
4 11BETA-D-GALACTOPYRANOSE
lig 9
MAN
d
1 12ALPHA-D-MANNOPYRANOSE
lig 10
NAG
d
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 11
FUC
d
3 10ALPHA-L-FUCOPYRANOSE
lig 12
GAL
d
4 11BETA-D-GALACTOPYRANOSE
lig 13
MAN
a
1 12ALPHA-D-MANNOPYRANOSE
lig 14
NAG
a
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 15
FUC
a
3 10ALPHA-L-FUCOPYRANOSE
lig 16
GAL
a
4 11BETA-D-GALACTOPYRANOSE
lig 17
CA
A
301 1CALCIUM ION
lig 18
MN
A
302 1MANGANESE (II) ION
lig 19
CA
B
301 1CALCIUM ION
lig 20
MN
B
302 1MANGANESE (II) ION
lig 21
CA
C
301 1CALCIUM ION
lig 22
MN
C
302 1MANGANESE (II) ION
lig 23
CA
D
301 1CALCIUM ION
lig 24
MN
D
302 1MANGANESE (II) ION