Analysis of Ligand-Protein Contacts in PDB entry:
9VDX


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 40 ligands in PDB entry 9VDX. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
FME
H
1 10N-FORMYLMETHIONINE
lig 2
HEC
C
401 43HEME C
lig 3
HEC
C
402 43HEME C
lig 4
HEC
C
403 43HEME C
lig 5
HEC
C
404 43HEME C
lig 6
DGA
C
405 37DIACYL GLYCEROL
lig 7
SO4
C
406 5SULFATE ION
lig 8
SO4
C
407 5SULFATE ION
lig 9
SO4
C
408 5SULFATE ION
lig 10
LDA
H
701 16LAURYL DIMETHYLAMINE-N-OXIDE
lig 11
SO4
H
702 5SULFATE ION
lig 12
SO4
H
703 5SULFATE ION
lig 13
SO4
H
704 5SULFATE ION
lig 14
SO4
H
705 5SULFATE ION
lig 15
LDA
H
706 16LAURYL DIMETHYLAMINE-N-OXIDE
lig 16
HTO
H
707 10HEPTANE-1,2,3-TRIOL
lig 17
BCB
L
301 66BACTERIOCHLOROPHYLL B
lig 18
BCB
L
302 66BACTERIOCHLOROPHYLL B
lig 19
BPB
L
303 65BACTERIOPHEOPHYTIN B
lig 20
LDA
L
304 16LAURYL DIMETHYLAMINE-N-OXIDE
lig 21
HTO
L
305 10HEPTANE-1,2,3-TRIOL
lig 22
LDA
L
306 16LAURYL DIMETHYLAMINE-N-OXIDE
lig 23
LDA
M
401 16LAURYL DIMETHYLAMINE-N-OXIDE
lig 24
HTO
M
402 10HEPTANE-1,2,3-TRIOL
lig 25
FE2
M
403 1FE (II) ION
lig 26
MQ7
M
404 48MENAQUINONE-7
lig 27
BCB
M
405 66BACTERIOCHLOROPHYLL B
lig 28
BCB
M
406 66BACTERIOCHLOROPHYLL B
lig 29
BPB
M
407 65BACTERIOPHEOPHYTIN B
lig 30
NS5
M
408 4015-CIS-1,2-DIHYDRONEUROSPORENE
lig 31
SO4
M
409 5SULFATE ION
lig 32
SO4
M
410 5SULFATE ION
lig 33
SO4
M
411 5SULFATE ION
lig 34
SO4
M
412 5SULFATE ION
lig 35
SO4
M
413 5SULFATE ION
lig 36
SO4
M
414 5SULFATE ION
lig 37
SO4
M
415 5SULFATE ION
lig 38
SO4
M
416 5SULFATE ION
lig 39
LDA
M
417 16LAURYL DIMETHYLAMINE-N-OXIDE
lig 40
LDA
M
418 16LAURYL DIMETHYLAMINE-N-OXIDE