Analysis of Ligand-Protein Contacts in PDB entry:
9YBK


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 33 ligands in PDB entry 9YBK. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
0DT
A
1 172'-DEOXY-L-RIBO-FURANOSYL THYMIDINE-5'-MON
lig 2
0DG
A
2 222'-DEOXY-L-RIBO-FURANOSYL GUANINE-5'-MONOP
lig 3
0DA
A
3 212'-DEOXY-L-RIBO-FURANOSYL ADENOSINE-5'-MON
lig 4
0DC
A
4 192'-DEOXY-L-RIBO-FURANOSYL CYTOSINE-5'-MONO
lig 5
0DG
A
5 222'-DEOXY-L-RIBO-FURANOSYL GUANINE-5'-MONOP
lig 6
0DG
A
6 222'-DEOXY-L-RIBO-FURANOSYL GUANINE-5'-MONOP
lig 7
0DC
A
7 192'-DEOXY-L-RIBO-FURANOSYL CYTOSINE-5'-MONO
lig 8
0DT
A
8 202'-DEOXY-L-RIBO-FURANOSYL THYMIDINE-5'-MON
lig 9
0DG
A
9 222'-DEOXY-L-RIBO-FURANOSYL GUANINE-5'-MONOP
lig 10
0DG
A
10 222'-DEOXY-L-RIBO-FURANOSYL GUANINE-5'-MONOP
lig 11
0DA
A
11 212'-DEOXY-L-RIBO-FURANOSYL ADENOSINE-5'-MON
lig 12
0DC
A
12 192'-DEOXY-L-RIBO-FURANOSYL CYTOSINE-5'-MONO
lig 13
0DT
A
13 202'-DEOXY-L-RIBO-FURANOSYL THYMIDINE-5'-MON
lig 14
0DC
A
14 192'-DEOXY-L-RIBO-FURANOSYL CYTOSINE-5'-MONO
lig 15
0DG
A
15 222'-DEOXY-L-RIBO-FURANOSYL GUANINE-5'-MONOP
lig 16
0DT
A
16 202'-DEOXY-L-RIBO-FURANOSYL THYMIDINE-5'-MON
lig 17
0DC
B
1 162'-DEOXY-L-RIBO-FURANOSYL CYTOSINE-5'-MONO
lig 18
0DA
B
2 212'-DEOXY-L-RIBO-FURANOSYL ADENOSINE-5'-MON
lig 19
0DA
B
3 212'-DEOXY-L-RIBO-FURANOSYL ADENOSINE-5'-MON
lig 20
0DG
B
4 222'-DEOXY-L-RIBO-FURANOSYL GUANINE-5'-MONOP
lig 21
0DC
B
5 192'-DEOXY-L-RIBO-FURANOSYL CYTOSINE-5'-MONO
lig 22
0DC
B
6 192'-DEOXY-L-RIBO-FURANOSYL CYTOSINE-5'-MONO
lig 23
0DG
B
7 222'-DEOXY-L-RIBO-FURANOSYL GUANINE-5'-MONOP
lig 24
0DT
B
8 202'-DEOXY-L-RIBO-FURANOSYL THYMIDINE-5'-MON
lig 25
0DG
B
9 222'-DEOXY-L-RIBO-FURANOSYL GUANINE-5'-MONOP
lig 26
0DA
B
10 212'-DEOXY-L-RIBO-FURANOSYL ADENOSINE-5'-MON
lig 27
0DG
B
11 222'-DEOXY-L-RIBO-FURANOSYL GUANINE-5'-MONOP
lig 28
0DT
B
12 202'-DEOXY-L-RIBO-FURANOSYL THYMIDINE-5'-MON
lig 29
0DC
B
13 192'-DEOXY-L-RIBO-FURANOSYL CYTOSINE-5'-MONO
lig 30
0DC
B
14 192'-DEOXY-L-RIBO-FURANOSYL CYTOSINE-5'-MONO
lig 31
0DA
B
15 212'-DEOXY-L-RIBO-FURANOSYL ADENOSINE-5'-MON
lig 32
0DC
B
16 192'-DEOXY-L-RIBO-FURANOSYL CYTOSINE-5'-MONO
lig 33
MG
A
101 1MAGNESIUM ION