Analysis of Ligand-Protein Contacts in PDB entry:
9YDW


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 122 ligands in PDB entry 9YDW. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
E
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
E
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
NAG
F
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 4
NAG
F
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
BMA
F
3 11BETA-D-MANNOPYRANOSE
lig 6
MAN
F
4 11ALPHA-D-MANNOPYRANOSE
lig 7
MAN
F
5 11ALPHA-D-MANNOPYRANOSE
lig 8
MAN
F
6 11ALPHA-D-MANNOPYRANOSE
lig 9
NAG
G
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
NAG
G
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 11
NAG
H
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
NAG
H
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 13
NAG
O
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 14
NAG
O
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 15
NAG
P
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 16
NAG
P
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 17
NAG
Q
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 18
NAG
Q
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 19
BMA
Q
3 11BETA-D-MANNOPYRANOSE
lig 20
MAN
Q
4 11ALPHA-D-MANNOPYRANOSE
lig 21
MAN
Q
5 11ALPHA-D-MANNOPYRANOSE
lig 22
MAN
Q
6 11ALPHA-D-MANNOPYRANOSE
lig 23
MAN
Q
7 11ALPHA-D-MANNOPYRANOSE
lig 24
MAN
Q
8 11ALPHA-D-MANNOPYRANOSE
lig 25
MAN
Q
9 11ALPHA-D-MANNOPYRANOSE
lig 26
NAG
R
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 27
NAG
R
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 28
BMA
R
3 11BETA-D-MANNOPYRANOSE
lig 29
NAG
S
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 30
NAG
S
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 31
NAG
T
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 32
NAG
T
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 33
BMA
T
3 11BETA-D-MANNOPYRANOSE
lig 34
MAN
T
4 11ALPHA-D-MANNOPYRANOSE
lig 35
MAN
T
5 11ALPHA-D-MANNOPYRANOSE
lig 36
MAN
T
6 11ALPHA-D-MANNOPYRANOSE
lig 37
MAN
T
7 11ALPHA-D-MANNOPYRANOSE
lig 38
MAN
T
8 11ALPHA-D-MANNOPYRANOSE
lig 39
MAN
T
9 11ALPHA-D-MANNOPYRANOSE
lig 40
NAG
U
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 41
NAG
U
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 42
NAG
V
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 43
NAG
V
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 44
BMA
V
3 11BETA-D-MANNOPYRANOSE
lig 45
MAN
V
4 11ALPHA-D-MANNOPYRANOSE
lig 46
MAN
V
5 11ALPHA-D-MANNOPYRANOSE
lig 47
MAN
V
6 11ALPHA-D-MANNOPYRANOSE
lig 48
NAG
W
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 49
NAG
W
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 50
NAG
X
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 51
NAG
X
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 52
NAG
Y
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 53
NAG
Y
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 54
NAG
Z
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 55
NAG
Z
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 56
NAG
a
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 57
NAG
a
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 58
NAG
b
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 59
NAG
b
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 60
BMA
b
3 11BETA-D-MANNOPYRANOSE
lig 61
NAG
c
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 62
NAG
c
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 63
NAG
d
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 64
NAG
d
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 65
NAG
e
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 66
NAG
e
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 67
NAG
f
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 68
NAG
f
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 69
BMA
f
3 11BETA-D-MANNOPYRANOSE
lig 70
MAN
f
4 11ALPHA-D-MANNOPYRANOSE
lig 71
MAN
f
5 11ALPHA-D-MANNOPYRANOSE
lig 72
MAN
f
6 11ALPHA-D-MANNOPYRANOSE
lig 73
NAG
g
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 74
NAG
g
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 75
NAG
h
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 76
NAG
h
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 77
NAG
i
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 78
NAG
i
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 79
BMA
i
3 11BETA-D-MANNOPYRANOSE
lig 80
NAG
j
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 81
NAG
j
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 82
NAG
k
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 83
NAG
k
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 84
NAG
l
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 85
NAG
l
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 86
NAG
m
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 87
NAG
m
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 88
NAG
n
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 89
NAG
n
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 90
NAG
A
701 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 91
NAG
A
702 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 92
NAG
A
703 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 93
NAG
C
601 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 94
NAG
C
602 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 95
NAG
C
603 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 96
NAG
C
604 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 97
NAG
C
605 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 98
NAG
C
606 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 99
NAG
C
607 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 100
NAG
C
608 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 101
NAG
B
701 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 102
NAG
B
702 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 103
NAG
B
703 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 104
NAG
D
601 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 105
NAG
D
602 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 106
NAG
D
603 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 107
NAG
D
604 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 108
NAG
D
605 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 109
NAG
D
606 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 110
NAG
D
607 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 111
NAG
D
608 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 112
NAG
I
701 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 113
NAG
I
702 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 114
NAG
I
703 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 115
NAG
J
601 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 116
NAG
J
602 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 117
NAG
J
603 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 118
NAG
J
604 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 119
NAG
J
605 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 120
NAG
J
606 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 121
NAG
J
607 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 122
NAG
J
608 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE