Analysis of Ligand-Protein Contacts in PDB entry:
9YMJ


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 117 ligands in PDB entry 9YMJ. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
P
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
P
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
BMA
P
3 11BETA-D-MANNOPYRANOSE
lig 4
NAG
Q
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
NAG
Q
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
BMA
Q
3 11BETA-D-MANNOPYRANOSE
lig 7
MAN
Q
4 11ALPHA-D-MANNOPYRANOSE
lig 8
MAN
Q
5 11ALPHA-D-MANNOPYRANOSE
lig 9
MAN
Q
6 11ALPHA-D-MANNOPYRANOSE
lig 10
NAG
R
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 11
NAG
R
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
BMA
R
3 11BETA-D-MANNOPYRANOSE
lig 13
MAN
R
4 11ALPHA-D-MANNOPYRANOSE
lig 14
MAN
R
5 11ALPHA-D-MANNOPYRANOSE
lig 15
NAG
S
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 16
NAG
S
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 17
NAG
T
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 18
NAG
T
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 19
BMA
T
3 11BETA-D-MANNOPYRANOSE
lig 20
MAN
T
4 11ALPHA-D-MANNOPYRANOSE
lig 21
MAN
T
5 11ALPHA-D-MANNOPYRANOSE
lig 22
MAN
T
6 11ALPHA-D-MANNOPYRANOSE
lig 23
MAN
T
7 11ALPHA-D-MANNOPYRANOSE
lig 24
MAN
T
8 11ALPHA-D-MANNOPYRANOSE
lig 25
MAN
T
9 11ALPHA-D-MANNOPYRANOSE
lig 26
NAG
U
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 27
NAG
U
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 28
BMA
U
3 11BETA-D-MANNOPYRANOSE
lig 29
NAG
V
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 30
NAG
V
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 31
BMA
V
3 11BETA-D-MANNOPYRANOSE
lig 32
MAN
V
4 11ALPHA-D-MANNOPYRANOSE
lig 33
MAN
V
5 11ALPHA-D-MANNOPYRANOSE
lig 34
MAN
V
6 11ALPHA-D-MANNOPYRANOSE
lig 35
NAG
W
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 36
NAG
W
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 37
BMA
W
3 11BETA-D-MANNOPYRANOSE
lig 38
MAN
W
4 11ALPHA-D-MANNOPYRANOSE
lig 39
MAN
W
5 11ALPHA-D-MANNOPYRANOSE
lig 40
NAG
X
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 41
NAG
X
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 42
NAG
Y
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 43
NAG
Y
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 44
BMA
Y
3 11BETA-D-MANNOPYRANOSE
lig 45
MAN
Y
4 11ALPHA-D-MANNOPYRANOSE
lig 46
MAN
Y
5 11ALPHA-D-MANNOPYRANOSE
lig 47
MAN
Y
6 11ALPHA-D-MANNOPYRANOSE
lig 48
MAN
Y
7 11ALPHA-D-MANNOPYRANOSE
lig 49
MAN
Y
8 11ALPHA-D-MANNOPYRANOSE
lig 50
MAN
Y
9 11ALPHA-D-MANNOPYRANOSE
lig 51
NAG
Z
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 52
NAG
Z
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 53
BMA
Z
3 11BETA-D-MANNOPYRANOSE
lig 54
NAG
a
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 55
NAG
a
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 56
BMA
a
3 11BETA-D-MANNOPYRANOSE
lig 57
MAN
a
4 11ALPHA-D-MANNOPYRANOSE
lig 58
MAN
a
5 11ALPHA-D-MANNOPYRANOSE
lig 59
MAN
a
6 11ALPHA-D-MANNOPYRANOSE
lig 60
NAG
b
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 61
NAG
b
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 62
BMA
b
3 11BETA-D-MANNOPYRANOSE
lig 63
MAN
b
4 11ALPHA-D-MANNOPYRANOSE
lig 64
MAN
b
5 11ALPHA-D-MANNOPYRANOSE
lig 65
NAG
c
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 66
NAG
c
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 67
NAG
d
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 68
NAG
d
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 69
BMA
d
3 11BETA-D-MANNOPYRANOSE
lig 70
MAN
d
4 11ALPHA-D-MANNOPYRANOSE
lig 71
MAN
d
5 11ALPHA-D-MANNOPYRANOSE
lig 72
MAN
d
6 11ALPHA-D-MANNOPYRANOSE
lig 73
MAN
d
7 11ALPHA-D-MANNOPYRANOSE
lig 74
MAN
d
8 11ALPHA-D-MANNOPYRANOSE
lig 75
MAN
d
9 11ALPHA-D-MANNOPYRANOSE
lig 76
NAG
A
701 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 77
NAG
A
702 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 78
NAG
A
703 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 79
NAG
A
704 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 80
NAG
A
705 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 81
NAG
A
706 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 82
NAG
A
707 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 83
NAG
A
708 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 84
NAG
A
709 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 85
NAG
A
710 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 86
NAG
A
711 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 87
NAG
A
712 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 88
NAG
A
713 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 89
NAG
A
714 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 90
NAG
B
701 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 91
NAG
B
702 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 92
NAG
B
703 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 93
NAG
B
704 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 94
NAG
B
705 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 95
NAG
B
706 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 96
NAG
B
707 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 97
NAG
B
708 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 98
NAG
B
709 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 99
NAG
B
710 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 100
NAG
B
711 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 101
NAG
B
712 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 102
NAG
B
713 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 103
NAG
B
714 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 104
NAG
C
701 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 105
NAG
C
702 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 106
NAG
C
703 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 107
NAG
C
704 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 108
NAG
C
705 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 109
NAG
C
706 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 110
NAG
C
707 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 111
NAG
C
708 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 112
NAG
C
709 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 113
NAG
C
710 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 114
NAG
C
711 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 115
NAG
C
712 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 116
NAG
C
713 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 117
NAG
C
714 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE