1QI9 Oxidoreductase date Jun 10, 1999
title X-Ray Siras Structure Determination Of A Vanadium-Dependent Haloperoxidase From Ascophyllum Nodosum At 2.0 A Resolution
authors M.Weyand, H.J.Hecht, M.Kiess, M.F.Liaud, H.Vilter, D.Schomburg
compound source
Molecule: Vanadium-Dependent Bromoperoxidase
Chain: A
Synonym: V-Bpo,Vanadium Haloperoxidase
Ec: 1.11.1.18
Organism_scientific: Ascophyllum Nodosum
Organism_taxid: 52969

Molecule: Vanadium-Dependent Bromoperoxidase
Chain: B
Synonym: V-Bpo,Vanadium Haloperoxidase
Ec: 1.11.1.18

Organism_scientific: Ascophyllum Nodosum
Organism_taxid: 52969
symmetry Space Group: P 43 21 2
R_factor 0.165 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
113.190 113.190 272.300 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.05 Å
ligand IOD, IYR, PCA, TYI, VO4 enzyme Oxidoreductase E.C.1.11.1.18 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • peroxidase activity
  • bromide peroxidase activity


  • Primary referenceX-ray structure determination of a vanadium-dependent haloperoxidase from Ascophyllum nodosum at 2.0 A resolution., Weyand M, Hecht H, Kiess M, Liaud M, Vilter H, Schomburg D, J Mol Biol 1999 Oct 29;293(3):595-611. PMID:10543953
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (204 Kb) [Save to disk]
  • Biological Unit Coordinates (1qi9.pdb1.gz) 198 Kb
  • LPC: Ligand-Protein Contacts for 1QI9
  • CSU: Contacts of Structural Units for 1QI9
  • Likely Quarternary Molecular Structure file(s) for 1QI9
  • Structure Factors (953 Kb)
  • Retrieve 1QI9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1QI9 from S2C, [Save to disk]
  • Re-refined 1qi9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1QI9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1QI9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1QI9, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1qi9a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1qi9b_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1qi9_B] [1qi9_A] [1qi9]
  • SWISS-PROT database: [P81701]
  • Domain organization of [PRXV_ASCNO] by SWISSPFAM
  • Other resources with information on 1QI9
  • Community annotation for 1QI9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science