6EIT Virus date Sep 19, 2017
title Coxsackievirus A24v In Complex With The D1-D2 Fragment Of Ic
authors D.L.Hurdiss, N.A.Ranson
compound source
Molecule: Vp1
Chain: 1
Organism_scientific: Coxsackievirus A24
Organism_taxid: 12089
Cell_line: Normal Human Conjunctival (Nhc) Cells

Molecule: Vp2
Chain: 2

Organism_scientific: Coxsackievirus A24
Organism_taxid: 12089
Cell_line: Normal Human Conjunctival (Nhc) Cells

Molecule: Vp3
Chain: 3

Organism_scientific: Coxsackievirus A24
Organism_taxid: 12089
Cell_line: Normal Human Conjunctival (Nhc) Cells

Molecule: Intercellular Adhesion Molecule 1
Chain: 4
Synonym: Icam-1,Major Group Rhinovirus Receptor
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Icam1
Expression_system: Cricetulus Griseus
Expression_system_taxid: 10029
Expression_system_cell_line: Cho Lec3.2.8.1 Cells
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.90 Å
Gene
Ontology
ChainFunctionProcessComponent
1, 3, 2


Primary referenceRole of enhanced receptor engagement in the evolution of a pandemic acute hemorrhagic conjunctivitis virus., Baggen J, Hurdiss DL, Zocher G, Mistry N, Roberts RW, Slager JJ, Guo H, van Vliet ALW, Wahedi M, Benschop K, Duizer E, de Haan CAM, de Vries E, Casasnovas JM, de Groot RJ, Arnberg N, Stehle T, Ranson NA, Thibaut HJ, van Kuppeveld FJM, Proc Natl Acad Sci U S A. 2017 Dec 28. pii: 1713284115. doi:, 10.1073/pnas.1713284115. PMID:29284752
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (128 Kb) [Save to disk]
  • Biological Unit Coordinates (6eit.pdb1.gz) 7207 Kb
  • CSU: Contacts of Structural Units for 6EIT
  • Retrieve 6EIT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6EIT from S2C, [Save to disk]
  • View 6EIT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6EIT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6eit from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6eit_3] [6eit_1] [6eit_2] [6eit_4]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6EIT
  • Community annotation for 6EIT at PDBWiki (http://pdbwiki.org)

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