1D0H Toxin date Sep 10, 1999
title The Hc Fragment Of Tetanus Toxin Complexed With N-Acetyl-Gal
authors P.Emsley, C.Fotinou, I.Black, N.F.Fairweather, I.G.Charles, C.Wat E.Hewitt, N.W.Isaacs
compound source
Molecule: Protein (Tetanus Toxin Hc)
Chain: A
Fragment: C-Terminal Domain Of Heavy Chain
Synonym: Tentoxylysin
Engineered: Yes
Mutation: Yes
Organism_scientific: Clostridium Tetani
Organism_taxid: 1513
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet16b
symmetry Space Group: P 21 21 21
R_factor 0.204 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.076 70.882 122.238 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand A2G, SO4 enzyme
related structures by homologous chain: 1DIW, 1YXW
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe structures of the H(C) fragment of tetanus toxin with carbohydrate subunit complexes provide insight into ganglioside binding., Emsley P, Fotinou C, Black I, Fairweather NF, Charles IG, Watts C, Hewitt E, Isaacs NW, J Biol Chem 2000 Mar 24;275(12):8889-94. PMID:10722735
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (86 Kb) [Save to disk]
  • Biological Unit Coordinates (1d0h.pdb1.gz) 82 Kb
  • LPC: Ligand-Protein Contacts for 1D0H
  • CSU: Contacts of Structural Units for 1D0H
  • Likely Quarternary Molecular Structure file(s) for 1D0H
  • Structure Factors (358 Kb)
  • Retrieve 1D0H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1D0H from S2C, [Save to disk]
  • Re-refined 1d0h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1D0H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1D0H
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1D0H, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1d0ha2, region A:1111-1315 [Jmol] [rasmolscript] [script source]
        - Domain d1d0ha1, region A:875-1110 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1d0h] [1d0h_A]
  • SWISS-PROT database: [P04958]
  • Belongs to the botulinum and tetanus toxin (btt) family according to TCDB.
  • Domain organization of [TETX_CLOTE] by SWISSPFAM
  • Other resources with information on 1D0H
  • Community annotation for 1D0H at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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