4HLQ Hydrolase Activator Protein Transport date Oct 17, 2012
title Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In Co The Gap Domain Of Tbc1d20 From Homo Sapiens
authors E.M.Gazdag, K.Gavriljuk, A.Itzen, C.Koetting, K.Gerwert, R.S.Good
compound source
Molecule: Tbc1 Domain Family Member 20
Chain: A, C, E, G, I
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tbc1d20, C20orf140
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21de3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Popinm

Molecule: Ras-Related Protein Rab-1b
Chain: B, D, F, H, J
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rab1b
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21de3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmal
symmetry Space Group: P 21 21 21
R_factor 0.206 R_Free 0.274
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.170 118.640 290.110 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.30 Å
ligand BEF, GDP, MG, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
H, F, J, D, B


Primary referenceCatalytic mechanism of a mammalian Rab{middle dot}RabGAP complex in atomic detail., Gavriljuk K, Gazdag EM, Itzen A, Kotting C, Goody RS, Gerwert K, Proc Natl Acad Sci U S A. 2012 Dec 26;109(52):21348-53. doi:, 10.1073/pnas.1214431110. Epub 2012 Dec 12. PMID:23236136
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (749 Kb) [Save to disk]
  • Biological Unit Coordinates (4hlq.pdb1.gz) 154 Kb
  • Biological Unit Coordinates (4hlq.pdb2.gz) 154 Kb
  • Biological Unit Coordinates (4hlq.pdb3.gz) 154 Kb
  • Biological Unit Coordinates (4hlq.pdb4.gz) 147 Kb
  • Biological Unit Coordinates (4hlq.pdb5.gz) 152 Kb
  • LPC: Ligand-Protein Contacts for 4HLQ
  • CSU: Contacts of Structural Units for 4HLQ
  • Structure Factors (701 Kb)
  • Retrieve 4HLQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4HLQ from S2C, [Save to disk]
  • Re-refined 4hlq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4HLQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4HLQ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4HLQ, from MSDmotif at EBI
  • Fold representative 4hlq from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4hlq_J] [4hlq_I] [4hlq_H] [4hlq_D] [4hlq_B] [4hlq_C] [4hlq] [4hlq_F] [4hlq_E] [4hlq_A] [4hlq_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4HLQ: [RAB] [TBC ] by SMART
  • Other resources with information on 4HLQ
  • Community annotation for 4HLQ at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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