4V6W Ribosome date 3-0 20, 1998
authors A.M.Anger, J.P.Armache, O.Berninghausen, M.Habeck, M.Subkle D.N.Wilson, R.Beckmann
compound source
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method X-Ray Diffractionresolution
note 4V6W supersedes 3J38, 3J39, 3J3C, 3J3E
Gene
Ontology
ChainFunctionProcessComponent
AA

  • cytosolic ribosome
  • AB


    AC

  • cytosolic ribosome
  • AD
  • nuclease activity
  • endonuclease activity

  • cytosolic ribosome
  • AE

  • cytosolic ribosome
  • AF

  • cytosolic ribosome
  • AG

  • cytosolic ribosome
  • AH


    AI

  • cytosolic ribosome
  • AJ

  • cytosolic ribosome
  • AK


    AL


    AM


    AN

  • cytosolic ribosome
  • AO

  • cytosolic ribosome
  • AP


    AQ

  • cytosolic ribosome
  • AR

  • cytosolic ribosome
  • AS


    AT

  • cytosolic ribosome
  • AU


    AV

  • cytosolic ribosome
  • AW

  • cytosolic ribosome
  • AX

  • cytosolic ribosome
  • AY

  • cytosolic ribosome
  • AZ

  • cytosolic ribosome
  • Aa


    Ab
  • structural constituent of ri...

  • cytosolic ribosome
  • Ac

  • cytosolic small ribosomal su...
  • Ad


    Ae


    Af


    Ag


    Ah


    Az


    CA

  • cytosolic ribosome
  • CB


    CC

  • cytosolic ribosome
  • CD

  • cytosolic ribosome
  • CE

  • cytosolic ribosome
  • CF

  • cytosolic ribosome
  • CG

  • cytosolic ribosome
  • CH

  • cytosolic ribosome
  • CI

  • cytosolic ribosome
  • CJ

  • cytosolic ribosome
  • CK

  • cytosolic ribosome
  • CL

  • cytosolic ribosome
  • CM

  • cytosolic ribosome
  • CN


    CO

  • cytosolic ribosome
  • CP


    CQ

  • cytosolic ribosome
  • CR

  • cytosolic ribosome
  • CS


    CT

  • cytosolic ribosome
  • CU

  • cytosolic ribosome
  • CV


    CW

  • cytosolic ribosome
  • CX

  • cytosolic ribosome
  • CY

  • cytosolic ribosome
  • CZ


    Ca

  • cytosolic ribosome
  • Cb


    Cc

  • cytosolic ribosome
  • Cd

  • cytosolic ribosome
  • Ce


    Cf

  • cytosolic ribosome
  • Cg


    Ch

  • cytosolic ribosome
  • Ci

  • cytosolic ribosome
  • Cj


    Ck

  • cytosolic ribosome
  • Cl


    Cm


    Cn


    Co


    Cp


    Cq


    Cr


    Cz


    Primary referenceStructures of the human and Drosophila 80S ribosome., Anger AM, Armache JP, Berninghausen O, Habeck M, Subklewe M, Wilson DN, Beckmann R, Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104. PMID:23636399
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1677 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 4V6W
  • Retrieve 4V6W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4V6W from S2C, [Save to disk]
  • View 4V6W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4V6W
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4v6w from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v6w_Cc] [4v6w_Ci] [4v6w_AL] [4v6w_AQ] [4v6w] [4v6w_AR] [4v6w_CT] [4v6w_Ab] [4v6w_Cn] [4v6w_CB] [4v6w_AW] [4v6w_Cz] [4v6w_CH] [4v6w_AN] [4v6w_Cf] [4v6w_CN] [4v6w_AX] [4v6w_CF] [4v6w_Ad] [4v6w_Cd] [4v6w_B2] [4v6w_CO] [4v6w_AZ] [4v6w_A8] [4v6w_AV] [4v6w_AJ] [4v6w_CM] [4v6w_AT] [4v6w_CR] [4v6w_CY] [4v6w_CX] [4v6w_Cl] [4v6w_CW] [4v6w_Ah] [4v6w_CE] [4v6w_AK] [4v6w_CG] [4v6w_AM] [4v6w_AY] [4v6w_AI] [4v6w_Cb] [4v6w_Ch] [4v6w_CP] [4v6w_CU] [4v6w_Az] [4v6w_A5] [4v6w_CV] [4v6w_Ce] [4v6w_Aa] [4v6w_Co] [4v6w_AP] [4v6w_CK] [4v6w_CZ] [4v6w_Cm] [4v6w_AO] [4v6w_Ag] [4v6w_AS] [4v6w_CI] [4v6w_CL] [4v6w_CA] [4v6w_AD] [4v6w_Cj] [4v6w_CQ] [4v6w_AH] [4v6w_Cq] [4v6w_AG] [4v6w_A7] [4v6w_Ae] [4v6w_CJ] [4v6w_AF] [4v6w_CS] [4v6w_Cg] [4v6w_Ac] [4v6w_A9] [4v6w_Af] [4v6w_CC] [4v6w_AU] [4v6w_BC] [4v6w_AE] [4v6w_AB] [4v6w_AC] [4v6w_AA] [4v6w_CD] [4v6w_Cr] [4v6w_Ck] [4v6w_Ca] [4v6w_Cp]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4V6W: [EFG_C] [EFG_IV] [HABP4_PAI-RBP1] [KH] [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L15e] [Ribosomal_L19e] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_L31e] [Ribosomal_L32e] [Ribosomal_L40e] [Ribosomal_S10] [Ribosomal_S13_N] [Ribosomal_S15] [Ribosomal_S19e] [Ribosomal_S27] [Ribosomal_S3Ae] [Ribosomal_S4] [Ribosomal_S6e] [S4] [TRASH] [WD40 ] by SMART
  • Other resources with information on 4V6W
  • Community annotation for 4V6W at PDBWiki (http://pdbwiki.org)

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