Structure based on 3qen

Ideal structure
Name: 5-bromo-2'-deoxycytidine
Formula: C9 H12 Br N3 O4
Weight: 306.113
SMILES: "NC1=NC(=O)N(C=C1Br)[CH]2C[CH](O)[CH](CO)O2"
Spacial conformation based on PDB 3qen.
Also present on 5lfw, 5lfx
RESIDUE   5BT     29
CONECT      N1     3 C2   C6   C1' 
CONECT      C2     3 N1   O2   N3  
CONECT      O2     1 C2  
CONECT      N3     2 C2   C4  
CONECT      C4     3 N3   N4   C5  
CONECT      N4     3 C4   HN4  HN4A
CONECT      C5     3 C4   BR5  C6  
CONECT      BR5    1 C5  
CONECT      C6     3 N1   C5   H6  
CONECT      C1'    4 N1   C2'  O4'  H1' 
CONECT      C2'    4 C1'  C3'  H2'  H2'A
CONECT      C3'    4 C2'  O3'  C4'  H3' 
CONECT      O3'    2 C3'  HO3'
CONECT      C4'    4 C3'  O4'  C5'  H4' 
CONECT      O4'    2 C1'  C4' 
CONECT      C5'    4 C4'  O5'  H5'  H5'A
CONECT      O5'    2 C5'  HO5'
CONECT      HN4    1 N4  
CONECT      HN4A   1 N4  
CONECT      H6     1 C6  
CONECT      H1'    1 C1' 
CONECT      H2'    1 C2' 
CONECT      H2'A   1 C2' 
CONECT      H3'    1 C3' 
CONECT      HO3'   1 O3' 
CONECT      H4'    1 C4' 
CONECT      H5'    1 C5' 
CONECT      H5'A   1 C5' 
CONECT      HO5'   1 O5' 
HET    5BT             29
HETSYN     5BT 5-bromo-2'-doxy-D-cytidine
HETNAM     5BT 5-bromo-2'-deoxycytidine
FORMUL      5BT    C9 H12 Br1 N3 O4

uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science