Structure based on 1bsu

Ideal structure
Name: 5-methyl-2'-deoxy-cytidine-5'-monophosphate
Formula: C10 H16 N3 O7 P
Weight: 321.224
SMILES: "CC1=CN([CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2)C(=O)N=C1N"
Spacial conformation based on PDB 1bsu.
Also present in other 203 PDB entries.
RESIDUE   5CM     37
CONECT      N1     3 C2   C6   C1' 
CONECT      C2     3 N1   N3   O2  
CONECT      N3     2 C2   C4  
CONECT      C4     3 N3   C5   N4  
CONECT      C5     3 C4   C5A  C6  
CONECT      C5A    4 C5   H5A1 H5A2 H5A3
CONECT      C6     3 N1   C5   H6  
CONECT      O2     1 C2  
CONECT      N4     3 C4   HN41 HN42
CONECT      C1'    4 N1   C2'  O4'  H1' 
CONECT      C2'    4 C1'  C3'  H2'  H2''
CONECT      C3'    4 C2'  C4'  O3'  H3' 
CONECT      C4'    4 C3'  O4'  C5'  H4' 
CONECT      O4'    2 C1'  C4' 
CONECT      O3'    2 C3'  HO3'
CONECT      C5'    4 C4'  O5'  H5'  H5''
CONECT      O5'    2 C5'  P   
CONECT      P      4 O5'  OP1  OP2  OP3 
CONECT      OP1    1 P   
CONECT      OP2    2 P    HOP2
CONECT      OP3    2 P    HOP3
CONECT      H5A1   1 C5A 
CONECT      H5A2   1 C5A 
CONECT      H5A3   1 C5A 
CONECT      H6     1 C6  
CONECT      HN41   1 N4  
CONECT      HN42   1 N4  
CONECT      H1'    1 C1' 
CONECT      H2'    1 C2' 
CONECT      H2''   1 C2' 
CONECT      H3'    1 C3' 
CONECT      H4'    1 C4' 
CONECT      HO3'   1 O3' 
CONECT      H5'    1 C5' 
CONECT      H5''   1 C5' 
CONECT      HOP2   1 OP2 
CONECT      HOP3   1 OP3 
END   
HET    5CM             37
HETNAM     5CM 5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE
FORMUL      5CM    C10 H16 N3 O7 P1

This OCA MONOMER page
uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science