Structure based on 1fyi | Ideal structure |
|
Name: 8-oxo-2'-deoxy-guanosine-5'-monophosphate |
Formula: C10 H14 N5 O8 P |
Weight: 363.221 |
SMILES: "NC1=NC2=C(NC(=O)N2[CH]3C[CH](O)[CH](CO[P](O)(O)=O)O3)C(=O)N1" |
Spacial conformation based on PDB
1fyi. Also present in other
259 PDB entries. |
RESIDUE 8OG 38
CONECT OP3 2 P HOP3
CONECT P 4 OP3 OP1 OP2 O5'
CONECT OP1 1 P
CONECT OP2 2 P HOP2
CONECT O5' 2 P C5'
CONECT C5' 4 O5' C4' H5' H5''
CONECT C4' 4 C5' O4' C3' H4'
CONECT O4' 2 C4' C1'
CONECT C3' 4 C4' O3' C2' H3'
CONECT O3' 2 C3' HO3'
CONECT C2' 4 C3' C1' H2' H2''
CONECT C1' 4 O4' C2' N9 H1'
CONECT N9 3 C1' C8 C4
CONECT C8 3 N9 N7 O8
CONECT N7 3 C8 C5 H7
CONECT C5 3 N7 C6 C4
CONECT C6 3 C5 O6 N1
CONECT O6 1 C6
CONECT N1 3 C6 C2 H1
CONECT C2 3 N1 N2 N3
CONECT N2 3 C2 H21 H22
CONECT N3 2 C2 C4
CONECT C4 3 N9 C5 N3
CONECT O8 1 C8
CONECT HOP3 1 OP3
CONECT HOP2 1 OP2
CONECT H5' 1 C5'
CONECT H5'' 1 C5'
CONECT H4' 1 C4'
CONECT H3' 1 C3'
CONECT HO3' 1 O3'
CONECT H2' 1 C2'
CONECT H2'' 1 C2'
CONECT H1' 1 C1'
CONECT H7 1 N7
CONECT H1 1 N1
CONECT H21 1 N2
CONECT H22 1 N2
END
HET 8OG 38
HETSYN 8OG 8-OXO-7,8-DIHYDRO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE
HETNAM 8OG 8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE
FORMUL 8OG C10 H14 N5 O8 P1