Structure based on 1kny

Ideal structure
Name: kanamycin a
Formula: C18 H36 N4 O11
Weight: 484.499
SMILES: "NC[CH]1O[CH](O[CH]2[CH](N)C[CH](N)[CH](O[CH]3O[CH](CO)[CH](O)[CH](N)[CH]3O)[CH]2O)[CH](O)[CH](O)[CH]1O"
Spacial conformation based on PDB 1kny.
Also present in other 22 PDB entries.
RESIDUE   KAN     69
CONECT      C1     4 C2   O5   O9   H1  
CONECT      C2     4 C1   C3   O6   H2  
CONECT      C3     4 C2   C4   O7   H3  
CONECT      C4     4 C3   C5   O8   H4  
CONECT      C5     4 C4   C6   O5   H5  
CONECT      C6     4 C5   N1   H61  H62 
CONECT      C7     4 C8   C12  N3   H7  
CONECT      C8     4 C7   C9   O11  H8  
CONECT      C9     4 C8   C10  O10  H9  
CONECT      C10    4 C9   C11  O9   H10 
CONECT      C11    4 C10  C12  N2   H11 
CONECT      C12    4 C7   C11  H121 H122
CONECT      C13    4 C14  O11  O12  H13 
CONECT      C14    4 C13  C15  O13  H14 
CONECT      C15    4 C14  C16  N4   H15 
CONECT      C16    4 C15  C17  O14  H16 
CONECT      C17    4 C16  C18  O12  H17 
CONECT      C18    4 C17  O15  H181 H182
CONECT      N1     3 C6   HN11 HN12
CONECT      N2     3 C11  HN21 HN22
CONECT      N3     3 C7   HN31 HN32
CONECT      N4     3 C15  HN41 HN42
CONECT      O5     2 C1   C5  
CONECT      O6     2 C2   HO6 
CONECT      O7     2 C3   HO7 
CONECT      O8     2 C4   HO8 
CONECT      O9     2 C1   C10 
CONECT      O10    2 C9   HO1 
CONECT      O11    2 C8   C13 
CONECT      O12    2 C13  C17 
CONECT      O13    2 C14  HO3 
CONECT      O14    2 C16  HO4 
CONECT      O15    2 C18  HO5 
CONECT      H1     1 C1  
CONECT      H2     1 C2  
CONECT      H3     1 C3  
CONECT      H4     1 C4  
CONECT      H5     1 C5  
CONECT      H61    1 C6  
CONECT      H62    1 C6  
CONECT      H7     1 C7  
CONECT      H8     1 C8  
CONECT      H9     1 C9  
CONECT      H10    1 C10 
CONECT      H11    1 C11 
CONECT      H121   1 C12 
CONECT      H122   1 C12 
CONECT      H13    1 C13 
CONECT      H14    1 C14 
CONECT      H15    1 C15 
CONECT      H16    1 C16 
CONECT      H17    1 C17 
CONECT      H181   1 C18 
CONECT      H182   1 C18 
CONECT      HN11   1 N1  
CONECT      HN12   1 N1  
CONECT      HN21   1 N2  
CONECT      HN22   1 N2  
CONECT      HN31   1 N3  
CONECT      HN32   1 N3  
CONECT      HN41   1 N4  
CONECT      HN42   1 N4  
CONECT      HO6    1 O6  
CONECT      HO7    1 O7  
CONECT      HO8    1 O8  
CONECT      HO1    1 O10 
CONECT      HO3    1 O13 
CONECT      HO4    1 O14 
CONECT      HO5    1 O15 
HET    KAN             69
FORMUL      KAN    C18 H36 N4 O11

uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science