PDB Short entry for 1BO1 HEADER TRANSFERASE 02-AUG-98 1BO1 TITLE PHOSPHATIDYLINOSITOL PHOSPHATE KINASE TYPE II BETA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (PHOSPHATIDYLINOSITOL PHOSPHATE KINASE IIBETA); COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PIPK; COMPND 5 EC: 2.7.1.68; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACTERIAL; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28B; SOURCE 10 OTHER_DETAILS: HUMAN ENZYME CLONED INTO E.COLI. KEYWDS LIPID SIGNALING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR V.D.RAO,S.MISRA,I.V.BORONENKOV,R.A.ANDERSON,J.H.HURLEY REVDAT 4 07-FEB-24 1BO1 1 REMARK REVDAT 3 24-FEB-09 1BO1 1 VERSN REVDAT 2 12-JAN-00 1BO1 4 HEADER COMPND REMARK JRNL REVDAT 2 2 4 ATOM SOURCE SEQRES REVDAT 1 07-OCT-98 1BO1 0 JRNL AUTH V.D.RAO,S.MISRA,I.V.BORONENKOV,R.A.ANDERSON,J.H.HURLEY JRNL TITL STRUCTURE OF TYPE IIBETA PHOSPHATIDYLINOSITOL PHOSPHATE JRNL TITL 2 KINASE: A PROTEIN KINASE FOLD FLATTENED FOR INTERFACIAL JRNL TITL 3 PHOSPHORYLATION. JRNL REF CELL(CAMBRIDGE,MASS.) V. 94 829 1998 JRNL REFN ISSN 0092-8674 JRNL PMID 9753329 JRNL DOI 10.1016/S0092-8674(00)81741-9 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.8 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 100000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.1000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 17398 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.299 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 95 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.12 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1990 REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE : 0.3098 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 95 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5282 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 19 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.450 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.339 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : RESTRAINTS REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARAM19X.PRO REMARK 3 PARAMETER FILE 3 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPH19X.PRO REMARK 3 TOPOLOGY FILE 3 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1BO1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB. REMARK 100 THE DEPOSITION ID IS D_1000008419. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-98 REMARK 200 TEMPERATURE (KELVIN) : 300 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X9B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MACSCIENCE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21621 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 13.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 10.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.32500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM SODIUM CITRATE PH5.6 200MM REMARK 280 MAGNESIUM ACETATE 100MM LITHIUM ACETATE 16% PEG (4000) REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.23600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.23600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 54.95750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 91.20150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 54.95750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 91.20150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.23600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 54.95750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 91.20150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 53.23600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 54.95750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 91.20150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 ASN A 4 REMARK 465 CYS A 5 REMARK 465 THR A 6 REMARK 465 SER A 7 REMARK 465 THR A 8 REMARK 465 THR A 9 REMARK 465 ALA A 10 REMARK 465 VAL A 11 REMARK 465 ALA A 12 REMARK 465 VAL A 13 REMARK 465 ALA A 14 REMARK 465 PRO A 15 REMARK 465 LEU A 16 REMARK 465 SER A 17 REMARK 465 ALA A 18 REMARK 465 SER A 19 REMARK 465 LYS A 20 REMARK 465 THR A 21 REMARK 465 LYS A 22 REMARK 465 THR A 23 REMARK 465 LYS A 24 REMARK 465 LYS A 25 REMARK 465 LYS A 26 REMARK 465 HIS A 27 REMARK 465 PHE A 28 REMARK 465 VAL A 29 REMARK 465 CYS A 30 REMARK 465 GLN A 31 REMARK 465 LYS A 32 REMARK 465 VAL A 33 REMARK 465 GLY A 133 REMARK 465 ARG A 134 REMARK 465 CYS A 135 REMARK 465 GLY A 136 REMARK 465 CYS A 307 REMARK 465 GLU A 308 REMARK 465 ASN A 309 REMARK 465 ASP A 310 REMARK 465 GLY A 311 REMARK 465 VAL A 312 REMARK 465 GLY A 313 REMARK 465 GLY A 314 REMARK 465 ASN A 315 REMARK 465 LEU A 316 REMARK 465 LEU A 317 REMARK 465 CYS A 318 REMARK 465 SER A 319 REMARK 465 TYR A 320 REMARK 465 GLY A 321 REMARK 465 THR A 322 REMARK 465 PRO A 323 REMARK 465 PRO A 324 REMARK 465 ASP A 325 REMARK 465 SER A 326 REMARK 465 PRO A 327 REMARK 465 GLY A 328 REMARK 465 ASN A 329 REMARK 465 LEU A 330 REMARK 465 LEU A 331 REMARK 465 SER A 332 REMARK 465 PHE A 333 REMARK 465 PRO A 334 REMARK 465 ARG A 335 REMARK 465 PHE A 336 REMARK 465 PHE A 337 REMARK 465 GLY A 338 REMARK 465 PRO A 339 REMARK 465 GLY A 340 REMARK 465 GLU A 341 REMARK 465 PRO A 373 REMARK 465 TYR A 374 REMARK 465 ASP A 375 REMARK 465 THR A 376 REMARK 465 LYS A 377 REMARK 465 LYS A 378 REMARK 465 LYS A 379 REMARK 465 ALA A 380 REMARK 465 ALA A 381 REMARK 465 HIS A 382 REMARK 465 ALA A 383 REMARK 465 ALA A 384 REMARK 465 LYS A 385 REMARK 465 THR A 386 REMARK 465 VAL A 387 REMARK 465 LYS A 388 REMARK 465 HIS A 389 REMARK 465 GLY A 390 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 SER B 3 REMARK 465 ASN B 4 REMARK 465 CYS B 5 REMARK 465 THR B 6 REMARK 465 SER B 7 REMARK 465 THR B 8 REMARK 465 THR B 9 REMARK 465 ALA B 10 REMARK 465 VAL B 11 REMARK 465 ALA B 12 REMARK 465 VAL B 13 REMARK 465 ALA B 14 REMARK 465 PRO B 15 REMARK 465 LEU B 16 REMARK 465 SER B 17 REMARK 465 ALA B 18 REMARK 465 SER B 19 REMARK 465 LYS B 20 REMARK 465 THR B 21 REMARK 465 LYS B 22 REMARK 465 THR B 23 REMARK 465 LYS B 24 REMARK 465 LYS B 25 REMARK 465 LYS B 26 REMARK 465 HIS B 27 REMARK 465 PHE B 28 REMARK 465 VAL B 29 REMARK 465 CYS B 30 REMARK 465 GLN B 31 REMARK 465 LYS B 32 REMARK 465 VAL B 33 REMARK 465 LYS B 34 REMARK 465 LEU B 35 REMARK 465 ASP B 304 REMARK 465 GLU B 305 REMARK 465 GLU B 306 REMARK 465 CYS B 307 REMARK 465 GLU B 308 REMARK 465 ASN B 309 REMARK 465 ASP B 310 REMARK 465 GLY B 311 REMARK 465 VAL B 312 REMARK 465 GLY B 313 REMARK 465 GLY B 314 REMARK 465 ASN B 315 REMARK 465 LEU B 316 REMARK 465 LEU B 317 REMARK 465 CYS B 318 REMARK 465 SER B 319 REMARK 465 TYR B 320 REMARK 465 GLY B 321 REMARK 465 THR B 322 REMARK 465 PRO B 323 REMARK 465 PRO B 324 REMARK 465 ASP B 325 REMARK 465 SER B 326 REMARK 465 PRO B 327 REMARK 465 GLY B 328 REMARK 465 ASN B 329 REMARK 465 LEU B 330 REMARK 465 LEU B 331 REMARK 465 SER B 332 REMARK 465 PHE B 333 REMARK 465 PRO B 334 REMARK 465 ARG B 335 REMARK 465 PHE B 336 REMARK 465 PHE B 337 REMARK 465 GLY B 338 REMARK 465 PRO B 339 REMARK 465 GLY B 340 REMARK 465 GLU B 341 REMARK 465 PHE B 342 REMARK 465 PRO B 373 REMARK 465 TYR B 374 REMARK 465 ASP B 375 REMARK 465 THR B 376 REMARK 465 LYS B 377 REMARK 465 LYS B 378 REMARK 465 LYS B 379 REMARK 465 ALA B 380 REMARK 465 ALA B 381 REMARK 465 HIS B 382 REMARK 465 ALA B 383 REMARK 465 ALA B 384 REMARK 465 LYS B 385 REMARK 465 THR B 386 REMARK 465 VAL B 387 REMARK 465 LYS B 388 REMARK 465 HIS B 389 REMARK 465 GLY B 390 REMARK 465 ALA B 391 REMARK 465 GLY B 392 REMARK 465 ALA B 393 REMARK 465 GLU B 394 REMARK 465 ILE B 395 REMARK 465 SER B 396 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE B 368 N - CA - C ANGL. DEV. = 16.8 DEGREES REMARK 500 PRO B 400 C - N - CA ANGL. DEV. = 13.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 37 -163.08 -121.58 REMARK 500 SER A 39 -71.52 -82.60 REMARK 500 ASN A 88 -26.44 -148.23 REMARK 500 SER A 129 -111.39 -113.44 REMARK 500 ARG A 145 0.01 58.69 REMARK 500 CYS A 174 -8.90 -141.78 REMARK 500 ASN A 177 78.58 -105.84 REMARK 500 ARG A 208 -63.86 -96.16 REMARK 500 VAL A 222 120.68 -10.77 REMARK 500 ALA A 223 -120.91 -163.91 REMARK 500 GLU A 225 35.88 -91.05 REMARK 500 ASP A 228 -101.78 -72.11 REMARK 500 LYS A 231 -8.22 -57.03 REMARK 500 ALA A 232 -87.46 -26.04 REMARK 500 LYS A 233 -30.90 -164.23 REMARK 500 ASP A 234 -150.93 -66.37 REMARK 500 LEU A 274 -94.18 -76.67 REMARK 500 LYS A 275 -7.85 -174.89 REMARK 500 ASP A 304 -70.08 -90.30 REMARK 500 ASP A 343 -54.51 -150.09 REMARK 500 LYS A 352 -4.69 -163.29 REMARK 500 LYS A 359 95.11 -69.89 REMARK 500 LYS A 360 -22.14 -160.45 REMARK 500 ILE A 368 -53.88 -127.42 REMARK 500 ASP A 369 43.66 -83.33 REMARK 500 ILE A 370 -15.56 -48.45 REMARK 500 LEU A 371 -92.58 -111.58 REMARK 500 ALA A 393 114.14 -162.11 REMARK 500 SER A 396 69.44 153.25 REMARK 500 THR A 397 -154.78 -113.13 REMARK 500 ARG B 37 -158.92 -115.93 REMARK 500 SER B 39 -71.22 -82.70 REMARK 500 ASN B 88 -26.43 -149.74 REMARK 500 SER B 129 -77.05 -114.84 REMARK 500 ASP B 130 87.43 178.92 REMARK 500 GLN B 132 145.67 -37.53 REMARK 500 ARG B 134 -136.23 -148.51 REMARK 500 THR B 137 -57.94 -144.62 REMARK 500 ARG B 145 0.34 59.12 REMARK 500 GLU B 173 35.07 -99.42 REMARK 500 CYS B 174 -9.29 -141.49 REMARK 500 ARG B 208 -73.51 -103.42 REMARK 500 VAL B 222 106.65 -5.01 REMARK 500 ALA B 223 -116.02 -146.31 REMARK 500 GLU B 225 64.74 -176.01 REMARK 500 ALA B 226 -151.14 -171.69 REMARK 500 ALA B 232 47.48 -107.16 REMARK 500 GLN B 248 122.18 -23.21 REMARK 500 LYS B 275 79.74 -5.16 REMARK 500 ASP B 278 86.04 12.78 REMARK 500 REMARK 500 THIS ENTRY HAS 59 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: ACT REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: GLY RICH LOOP (RESIDUES 130-135) - ATP BINDING. REMARK 800 FLAT, BASIC SURFACE-MEMBRANE BINDING. DBREF 1BO1 A 1 416 UNP P78356 PI52B_HUMAN 1 416 DBREF 1BO1 B 1 416 UNP P78356 PI52B_HUMAN 1 416 SEQRES 1 A 416 MET SER SER ASN CYS THR SER THR THR ALA VAL ALA VAL SEQRES 2 A 416 ALA PRO LEU SER ALA SER LYS THR LYS THR LYS LYS LYS SEQRES 3 A 416 HIS PHE VAL CYS GLN LYS VAL LYS LEU PHE ARG ALA SER SEQRES 4 A 416 GLU PRO ILE LEU SER VAL LEU MET TRP GLY VAL ASN HIS SEQRES 5 A 416 THR ILE ASN GLU LEU SER ASN VAL PRO VAL PRO VAL MET SEQRES 6 A 416 LEU MET PRO ASP ASP PHE LYS ALA TYR SER LYS ILE LYS SEQRES 7 A 416 VAL ASP ASN HIS LEU PHE ASN LYS GLU ASN LEU PRO SER SEQRES 8 A 416 ARG PHE LYS PHE LYS GLU TYR CYS PRO MET VAL PHE ARG SEQRES 9 A 416 ASN LEU ARG GLU ARG PHE GLY ILE ASP ASP GLN ASP TYR SEQRES 10 A 416 GLN ASN SER VAL THR ARG SER ALA PRO ILE ASN SER ASP SEQRES 11 A 416 SER GLN GLY ARG CYS GLY THR ARG PHE LEU THR THR TYR SEQRES 12 A 416 ASP ARG ARG PHE VAL ILE LYS THR VAL SER SER GLU ASP SEQRES 13 A 416 VAL ALA GLU MET HIS ASN ILE LEU LYS LYS TYR HIS GLN SEQRES 14 A 416 PHE ILE VAL GLU CYS HIS GLY ASN THR LEU LEU PRO GLN SEQRES 15 A 416 PHE LEU GLY MET TYR ARG LEU THR VAL ASP GLY VAL GLU SEQRES 16 A 416 THR TYR MET VAL VAL THR ARG ASN VAL PHE SER HIS ARG SEQRES 17 A 416 LEU THR VAL HIS ARG LYS TYR ASP LEU LYS GLY SER THR SEQRES 18 A 416 VAL ALA ARG GLU ALA SER ASP LYS GLU LYS ALA LYS ASP SEQRES 19 A 416 LEU PRO THR PHE LYS ASP ASN ASP PHE LEU ASN GLU GLY SEQRES 20 A 416 GLN LYS LEU HIS VAL GLY GLU GLU SER LYS LYS ASN PHE SEQRES 21 A 416 LEU GLU LYS LEU LYS ARG ASP VAL GLU PHE LEU ALA GLN SEQRES 22 A 416 LEU LYS ILE MET ASP TYR SER LEU LEU VAL GLY ILE HIS SEQRES 23 A 416 ASP VAL ASP ARG ALA GLU GLN GLU GLU MET GLU VAL GLU SEQRES 24 A 416 GLU ARG ALA GLU ASP GLU GLU CYS GLU ASN ASP GLY VAL SEQRES 25 A 416 GLY GLY ASN LEU LEU CYS SER TYR GLY THR PRO PRO ASP SEQRES 26 A 416 SER PRO GLY ASN LEU LEU SER PHE PRO ARG PHE PHE GLY SEQRES 27 A 416 PRO GLY GLU PHE ASP PRO SER VAL ASP VAL TYR ALA MET SEQRES 28 A 416 LYS SER HIS GLU SER SER PRO LYS LYS GLU VAL TYR PHE SEQRES 29 A 416 MET ALA ILE ILE ASP ILE LEU THR PRO TYR ASP THR LYS SEQRES 30 A 416 LYS LYS ALA ALA HIS ALA ALA LYS THR VAL LYS HIS GLY SEQRES 31 A 416 ALA GLY ALA GLU ILE SER THR VAL ASN PRO GLU GLN TYR SEQRES 32 A 416 SER LYS ARG PHE ASN GLU PHE MET SER ASN ILE LEU THR SEQRES 1 B 416 MET SER SER ASN CYS THR SER THR THR ALA VAL ALA VAL SEQRES 2 B 416 ALA PRO LEU SER ALA SER LYS THR LYS THR LYS LYS LYS SEQRES 3 B 416 HIS PHE VAL CYS GLN LYS VAL LYS LEU PHE ARG ALA SER SEQRES 4 B 416 GLU PRO ILE LEU SER VAL LEU MET TRP GLY VAL ASN HIS SEQRES 5 B 416 THR ILE ASN GLU LEU SER ASN VAL PRO VAL PRO VAL MET SEQRES 6 B 416 LEU MET PRO ASP ASP PHE LYS ALA TYR SER LYS ILE LYS SEQRES 7 B 416 VAL ASP ASN HIS LEU PHE ASN LYS GLU ASN LEU PRO SER SEQRES 8 B 416 ARG PHE LYS PHE LYS GLU TYR CYS PRO MET VAL PHE ARG SEQRES 9 B 416 ASN LEU ARG GLU ARG PHE GLY ILE ASP ASP GLN ASP TYR SEQRES 10 B 416 GLN ASN SER VAL THR ARG SER ALA PRO ILE ASN SER ASP SEQRES 11 B 416 SER GLN GLY ARG CYS GLY THR ARG PHE LEU THR THR TYR SEQRES 12 B 416 ASP ARG ARG PHE VAL ILE LYS THR VAL SER SER GLU ASP SEQRES 13 B 416 VAL ALA GLU MET HIS ASN ILE LEU LYS LYS TYR HIS GLN SEQRES 14 B 416 PHE ILE VAL GLU CYS HIS GLY ASN THR LEU LEU PRO GLN SEQRES 15 B 416 PHE LEU GLY MET TYR ARG LEU THR VAL ASP GLY VAL GLU SEQRES 16 B 416 THR TYR MET VAL VAL THR ARG ASN VAL PHE SER HIS ARG SEQRES 17 B 416 LEU THR VAL HIS ARG LYS TYR ASP LEU LYS GLY SER THR SEQRES 18 B 416 VAL ALA ARG GLU ALA SER ASP LYS GLU LYS ALA LYS ASP SEQRES 19 B 416 LEU PRO THR PHE LYS ASP ASN ASP PHE LEU ASN GLU GLY SEQRES 20 B 416 GLN LYS LEU HIS VAL GLY GLU GLU SER LYS LYS ASN PHE SEQRES 21 B 416 LEU GLU LYS LEU LYS ARG ASP VAL GLU PHE LEU ALA GLN SEQRES 22 B 416 LEU LYS ILE MET ASP TYR SER LEU LEU VAL GLY ILE HIS SEQRES 23 B 416 ASP VAL ASP ARG ALA GLU GLN GLU GLU MET GLU VAL GLU SEQRES 24 B 416 GLU ARG ALA GLU ASP GLU GLU CYS GLU ASN ASP GLY VAL SEQRES 25 B 416 GLY GLY ASN LEU LEU CYS SER TYR GLY THR PRO PRO ASP SEQRES 26 B 416 SER PRO GLY ASN LEU LEU SER PHE PRO ARG PHE PHE GLY SEQRES 27 B 416 PRO GLY GLU PHE ASP PRO SER VAL ASP VAL TYR ALA MET SEQRES 28 B 416 LYS SER HIS GLU SER SER PRO LYS LYS GLU VAL TYR PHE SEQRES 29 B 416 MET ALA ILE ILE ASP ILE LEU THR PRO TYR ASP THR LYS SEQRES 30 B 416 LYS LYS ALA ALA HIS ALA ALA LYS THR VAL LYS HIS GLY SEQRES 31 B 416 ALA GLY ALA GLU ILE SER THR VAL ASN PRO GLU GLN TYR SEQRES 32 B 416 SER LYS ARG PHE ASN GLU PHE MET SER ASN ILE LEU THR FORMUL 3 HOH *19(H2 O) HELIX 1 1 PRO A 41 ASN A 59 1 19 HELIX 2 2 PRO A 68 PHE A 71 5 4 HELIX 3 3 PRO A 100 PHE A 110 1 11 HELIX 4 4 ASP A 114 THR A 122 1 9 HELIX 5 5 SER A 154 GLU A 173 1 20 HELIX 6 6 LYS A 229 LYS A 231 5 3 HELIX 7 7 ASP A 240 ASN A 245 1 6 HELIX 8 8 SER A 256 LEU A 274 1 19 HELIX 9 9 VAL A 288 ARG A 301 1 14 HELIX 10 10 PRO A 400 ILE A 414 1 15 HELIX 11 11 PRO B 41 ASN B 59 1 19 HELIX 12 12 PRO B 68 PHE B 71 5 4 HELIX 13 13 PRO B 100 PHE B 110 1 11 HELIX 14 14 ASP B 114 THR B 122 1 9 HELIX 15 15 SER B 154 GLU B 173 1 20 HELIX 16 16 LYS B 229 ALA B 232 5 4 HELIX 17 17 ASP B 240 ASN B 245 1 6 HELIX 18 18 SER B 256 GLN B 273 1 18 HELIX 19 19 VAL B 288 ALA B 302 1 15 HELIX 20 20 TYR B 403 ILE B 414 1 12 SHEET 1 A 6 TYR A 74 ASP A 80 0 SHEET 2 A 6 ARG A 92 TYR A 98 -1 N GLU A 97 O SER A 75 SHEET 3 A 6 PHE A 183 VAL A 191 -1 N THR A 190 O LYS A 94 SHEET 4 A 6 VAL A 194 ARG A 202 -1 N VAL A 200 O LEU A 184 SHEET 5 A 6 PHE A 147 LYS A 150 -1 N LYS A 150 O VAL A 199 SHEET 6 A 6 PHE A 139 THR A 141 -1 N LEU A 140 O ILE A 149 SHEET 1 B 4 ARG A 213 LEU A 217 0 SHEET 2 B 4 LEU A 281 ASP A 287 -1 N ILE A 285 O ARG A 213 SHEET 3 B 4 GLU A 361 ILE A 367 -1 N ALA A 366 O LEU A 282 SHEET 4 B 4 SER A 353 GLU A 355 -1 N HIS A 354 O TYR A 363 SHEET 1 C 6 TYR B 74 ASP B 80 0 SHEET 2 C 6 ARG B 92 TYR B 98 -1 N GLU B 97 O SER B 75 SHEET 3 C 6 PHE B 183 VAL B 191 -1 N THR B 190 O LYS B 94 SHEET 4 C 6 VAL B 194 ARG B 202 -1 N VAL B 200 O LEU B 184 SHEET 5 C 6 PHE B 147 LYS B 150 -1 N LYS B 150 O VAL B 199 SHEET 6 C 6 PHE B 139 THR B 141 -1 N LEU B 140 O ILE B 149 SHEET 1 D 3 LEU B 281 ASP B 287 0 SHEET 2 D 3 GLU B 361 ILE B 367 -1 N ALA B 366 O LEU B 282 SHEET 3 D 3 SER B 353 GLU B 355 -1 N HIS B 354 O TYR B 363 SITE 1 ACT 6 LYS A 150 ASP A 278 ASP A 369 LYS A 218 SITE 2 ACT 6 ARG A 224 LYS A 239 CRYST1 109.915 182.403 106.472 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009098 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005482 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009392 0.00000 MTRIX1 1 -0.996792 0.067419 -0.043137 78.74410 1 MTRIX2 1 -0.029964 -0.814091 -0.579964 81.53310 1 MTRIX3 1 -0.074218 -0.576811 0.813499 28.79180 1