PDB Short entry for 1DM4 HEADER HYDROLASE 13-DEC-99 1DM4 TITLE SER195ALA MUTANT OF HUMAN THROMBIN COMPLEXED WITH FIBRINOPEPTIDE A (7- TITLE 2 16) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (ALPHA THROMBIN:LIGHT CHAIN); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PROTEIN (MUTANT ALPHA THROMBIN:HEAVY CHAIN); COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: PROTEIN (FIBRINOPEPTIDE); COMPND 12 CHAIN: C; COMPND 13 FRAGMENT: FPA; COMPND 14 ENGINEERED: YES; COMPND 15 OTHER_DETAILS: CHEMICALLY SYNTHESIZED SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 MOL_ID: 3; SOURCE 10 SYNTHETIC: YES KEYWDS MUTANT THROMBIN, RESIDUAL CATALYTIC ACTIVITY, FIBRINOPEPTIDE A, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.KRISHNAN,E.J.SADLER,A.TULINSKY REVDAT 8 14-MAR-18 1DM4 1 SEQADV REVDAT 7 04-OCT-17 1DM4 1 REMARK REVDAT 6 07-SEP-11 1DM4 1 COMPND REVDAT 5 24-FEB-09 1DM4 1 VERSN REVDAT 4 01-APR-03 1DM4 1 JRNL REVDAT 3 31-MAR-00 1DM4 1 JRNL REMARK DBREF SEQADV REVDAT 2 17-MAR-00 1DM4 1 REMARK SEQRES ATOM TITLE REVDAT 1 19-JAN-00 1DM4 0 JRNL AUTH R.KRISHNAN,J.E.SADLER,A.TULINSKY JRNL TITL STRUCTURE OF THE SER195ALA MUTANT OF HUMAN ALPHA--THROMBIN JRNL TITL 2 COMPLEXED WITH FIBRINOPEPTIDE A(7--16): EVIDENCE FOR JRNL TITL 3 RESIDUAL CATALYTIC ACTIVITY. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 56 406 2000 JRNL REFN ISSN 0907-4449 JRNL PMID 10739913 JRNL DOI 10.1107/S0907444900001487 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROFFT REMARK 3 AUTHORS : KONNERT,HENDRICKSON,FINZEL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 7.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 4.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 8330 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2376 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 149 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.016 ; NULL REMARK 3 ANGLE DISTANCE (A) : 0.042 ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: USED WEIGHTED FULL MATRIX LEAST SQUARES REMARK 3 PROCEDURE. REMARK 4 REMARK 4 1DM4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-DEC-99. REMARK 100 THE DEPOSITION ID IS D_1000010202. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAR-96 REMARK 200 TEMPERATURE (KELVIN) : 123.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : R-AXIS REMARK 200 DATA SCALING SOFTWARE : R-AXIS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9561 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 71.0 REMARK 200 DATA REDUNDANCY : 2.280 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.6 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.19000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4M SODIUM CITRATE, 1-2% ISOPROPANOL, REMARK 280 0.1M HEPES BUFFER, PH 7.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y,-Z REMARK 290 16555 X,-Y,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z,-X,-Y+1/2 REMARK 290 19555 -Z,-X+1/2,Y REMARK 290 20555 -Z+1/2,X,-Y REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z,-X REMARK 290 23555 Y,-Z,-X+1/2 REMARK 290 24555 -Y,-Z+1/2,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 67.55000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.55000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 67.55000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.55000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 67.55000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 67.55000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 67.55000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 67.55000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 67.55000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 67.55000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 67.55000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 67.55000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 67.55000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 67.55000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 67.55000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 67.55000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 67.55000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 67.55000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 67.55000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 67.55000 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 67.55000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 67.55000 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 67.55000 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 67.55000 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 67.55000 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 67.55000 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 67.55000 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 67.55000 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 67.55000 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 67.55000 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 67.55000 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 67.55000 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 67.55000 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 67.55000 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 67.55000 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 67.55000 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 270.20000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 67.55000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 14M REMARK 465 GLY A 14N REMARK 465 ARG B 15 REMARK 465 TRP B 147A REMARK 465 THR B 147B REMARK 465 ALA B 147C REMARK 465 ASN B 147D REMARK 465 VAL B 147E REMARK 465 GLY B 147F REMARK 465 LYS B 147G REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 HIS B 57 OXT ARG C 318 1.98 REMARK 500 OE2 GLU B 97A NH1 ARG B 175 2.12 REMARK 500 NH1 ARG B 187 OD2 ASP B 221 2.15 REMARK 500 O SER B 129B NE2 GLN B 131 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 1F C - N - CA ANGL. DEV. = 13.8 DEGREES REMARK 500 GLU A 1C C - N - CA ANGL. DEV. = 17.8 DEGREES REMARK 500 ARG A 4 CD - NE - CZ ANGL. DEV. = 10.0 DEGREES REMARK 500 ARG A 4 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 GLU A 14H CG - CD - OE2 ANGL. DEV. = -12.2 DEGREES REMARK 500 ILE A 14K CA - C - O ANGL. DEV. = 19.0 DEGREES REMARK 500 GLU B 18 CG - CD - OE2 ANGL. DEV. = -13.1 DEGREES REMARK 500 ASP B 21 CB - CG - OD1 ANGL. DEV. = 10.6 DEGREES REMARK 500 ASP B 21 CB - CG - OD2 ANGL. DEV. = -7.3 DEGREES REMARK 500 ARG B 35 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG B 35 NE - CZ - NH2 ANGL. DEV. = -6.3 DEGREES REMARK 500 LEU B 41 CB - CA - C ANGL. DEV. = 15.3 DEGREES REMARK 500 LEU B 41 CA - CB - CG ANGL. DEV. = 14.0 DEGREES REMARK 500 CYS B 42 CA - CB - SG ANGL. DEV. = 12.4 DEGREES REMARK 500 ARG B 50 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B 67 NE - CZ - NH2 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG B 73 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG B 73 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 75 CD - NE - CZ ANGL. DEV. = 9.5 DEGREES REMARK 500 ARG B 75 NE - CZ - NH1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG B 75 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG B 77A NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 GLU B 80 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 ASP B 100 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ARG B 101 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 101 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ASP B 116 CB - CG - OD2 ANGL. DEV. = -7.2 DEGREES REMARK 500 CYS B 122 CA - CB - SG ANGL. DEV. = 13.8 DEGREES REMARK 500 ARG B 126 CD - NE - CZ ANGL. DEV. = 28.1 DEGREES REMARK 500 ARG B 126 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG B 137 CD - NE - CZ ANGL. DEV. = -9.7 DEGREES REMARK 500 ARG B 137 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG B 137 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG B 165 CD - NE - CZ ANGL. DEV. = 16.1 DEGREES REMARK 500 ARG B 165 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG B 165 NE - CZ - NH2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ASP B 170 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 CYS B 182 CA - CB - SG ANGL. DEV. = 9.8 DEGREES REMARK 500 ALA B 183 CB - CA - C ANGL. DEV. = 9.3 DEGREES REMARK 500 ARG B 187 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 MET B 201 CA - CB - CG ANGL. DEV. = 11.7 DEGREES REMARK 500 ARG B 206 CD - NE - CZ ANGL. DEV. = 14.8 DEGREES REMARK 500 ARG B 206 NH1 - CZ - NH2 ANGL. DEV. = -7.6 DEGREES REMARK 500 ARG B 206 NE - CZ - NH2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 222 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 TYR B 228 CB - CG - CD1 ANGL. DEV. = 5.2 DEGREES REMARK 500 PHE B 232 CB - CG - CD1 ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG B 233 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ASP C 309 CB - CG - OD2 ANGL. DEV. = -11.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 1G -117.64 -92.90 REMARK 500 GLU A 1C -71.45 -34.92 REMARK 500 ALA A 1B -41.04 154.49 REMARK 500 PHE A 7 -92.75 -131.88 REMARK 500 SER A 11 56.79 32.57 REMARK 500 THR A 14B 25.11 -152.14 REMARK 500 SER B 36A 116.67 -171.85 REMARK 500 GLN B 38 99.03 -57.21 REMARK 500 CYS B 42 -163.34 -169.28 REMARK 500 SER B 48 -159.95 -148.99 REMARK 500 PRO B 60C -4.36 -43.69 REMARK 500 ASN B 60G 71.70 -178.31 REMARK 500 GLU B 61 4.21 -52.76 REMARK 500 HIS B 71 -54.05 -127.60 REMARK 500 THR B 74 -56.15 -126.85 REMARK 500 ARG B 77A -81.07 -29.14 REMARK 500 ASN B 98 -5.85 -140.31 REMARK 500 LEU B 99 31.85 72.46 REMARK 500 SER B 115 -163.28 -161.69 REMARK 500 ARG B 126 -62.02 -25.74 REMARK 500 ARG B 165 -63.28 -29.11 REMARK 500 ILE B 176 128.34 -39.16 REMARK 500 CYS B 191 -150.41 -138.25 REMARK 500 SER B 214 -72.52 -110.07 REMARK 500 ASP B 243 36.44 -89.24 REMARK 500 GLN B 244 -50.22 -127.96 REMARK 500 REMARK 500 REMARK: NULL DBREF 1DM4 A 1H 14N UNP P00734 THRB_HUMAN 328 362 DBREF 1DM4 B 15 247 UNP P00734 THRB_HUMAN 363 622 DBREF 1DM4 C 308 318 PDB 1DM4 1DM4 308 318 SEQADV 1DM4 ALA B 195 UNP P00734 SER 561 ENGINEERED MUTATION SEQRES 1 A 35 THR PHE GLY SER GLY GLU ALA ASP CYS GLY LEU ARG PRO SEQRES 2 A 35 LEU PHE GLU LYS LYS SER LEU GLU ASP LYS THR GLU ARG SEQRES 3 A 35 GLU LEU LEU GLU SER TYR ILE ASP GLY SEQRES 1 B 260 ARG ILE VAL GLU GLY SER ASP ALA GLU ILE GLY MET SER SEQRES 2 B 260 PRO TRP GLN VAL MET LEU PHE ARG LYS SER PRO GLN GLU SEQRES 3 B 260 LEU LEU CYS GLY ALA SER LEU ILE SER ASP ARG TRP VAL SEQRES 4 B 260 LEU THR ALA ALA HIS CYS LEU LEU TYR PRO PRO TRP ASP SEQRES 5 B 260 LYS ASN PHE THR GLU ASN ASP LEU LEU VAL ARG ILE GLY SEQRES 6 B 260 LYS HIS SER ARG THR ARG TYR GLU ARG ASN ILE GLU LYS SEQRES 7 B 260 ILE SER MET LEU GLU LYS ILE TYR ILE HIS PRO ARG TYR SEQRES 8 B 260 ASN TRP ARG GLU ASN LEU ASP ARG ASP ILE ALA LEU MET SEQRES 9 B 260 LYS LEU LYS LYS PRO VAL ALA PHE SER ASP TYR ILE HIS SEQRES 10 B 260 PRO VAL CYS LEU PRO ASP ARG GLU THR ALA ALA SER LEU SEQRES 11 B 260 LEU GLN ALA GLY TYR LYS GLY ARG VAL THR GLY TRP GLY SEQRES 12 B 260 ASN LEU LYS GLU THR TRP THR ALA ASN VAL GLY LYS GLY SEQRES 13 B 260 GLN PRO SER VAL LEU GLN VAL VAL ASN LEU PRO ILE VAL SEQRES 14 B 260 GLU ARG PRO VAL CYS LYS ASP SER THR ARG ILE ARG ILE SEQRES 15 B 260 THR ASP ASN MET PHE CYS ALA GLY TYR LYS PRO ASP GLU SEQRES 16 B 260 GLY LYS ARG GLY ASP ALA CYS GLU GLY ASP ALA GLY GLY SEQRES 17 B 260 PRO PHE VAL MET LYS SER PRO PHE ASN ASN ARG TRP TYR SEQRES 18 B 260 GLN MET GLY ILE VAL SER TRP GLY GLU GLY CYS ASP ARG SEQRES 19 B 260 ASP GLY LYS TYR GLY PHE TYR THR HIS VAL PHE ARG LEU SEQRES 20 B 260 LYS LYS TRP ILE GLN LYS VAL ILE ASP GLN PHE GLY GLU SEQRES 1 C 11 ACE ASP PHE LEU ALA GLU GLY GLY GLY VAL ARG HET ACE C 308 3 HETNAM ACE ACETYL GROUP FORMUL 3 ACE C2 H4 O FORMUL 4 HOH *149(H2 O) HELIX 1 1 PHE A 7 SER A 11 5 5 HELIX 2 3 ALA B 55 LEU B 60 1 6 HELIX 3 5 ASP B 125 LEU B 130 1 9 HELIX 4 6 GLU B 164 THR B 172 1 9 HELIX 5 8 LEU B 234 GLY B 246 1 13 SHEET 1 B 7 GLN B 30 ARG B 35 0 SHEET 2 B 7 LEU B 40 LEU B 46 -1 N LEU B 41 O LEU B 33 SHEET 3 B 7 TRP B 51 THR B 54 -1 N LEU B 53 O SER B 45 SHEET 4 B 7 ALA B 104 LEU B 108 -1 O ALA B 104 N THR B 54 SHEET 5 B 7 LYS B 81 ILE B 90 -1 N GLU B 86 O LYS B 107 SHEET 6 B 7 LEU B 64 ILE B 68 -1 O LEU B 64 N LEU B 85 SHEET 7 B 7 GLN B 30 ARG B 35 -1 O MET B 32 N ARG B 67 SSBOND 1 CYS A 1 CYS B 122 1555 1555 2.04 SSBOND 2 CYS B 42 CYS B 58 1555 1555 2.06 SSBOND 3 CYS B 168 CYS B 182 1555 1555 2.06 SSBOND 4 CYS B 191 CYS B 220 1555 1555 2.02 LINK C ACE C 308 N ASP C 309 1555 1555 1.35 CISPEP 1 SER B 36A PRO B 37 0 1.80 CRYST1 135.100 135.100 135.100 90.00 90.00 90.00 I 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007402 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007402 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007402 0.00000