PDB Short entry for 1ICH
HEADER    APOPTOSIS                               01-APR-01   1ICH              
TITLE     SOLUTION STRUCTURE OF THE TUMOR NECROSIS FACTOR RECEPTOR-1            
TITLE    2 DEATH DOMAIN                                                         
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: TUMOR NECROSIS FACTOR RECEPTOR-1;                          
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: DEATH DOMAIN;                                              
COMPND   5 SYNONYM: TNF-1;                                                      
COMPND   6 ENGINEERED: YES;                                                     
COMPND   7 MUTATION: YES                                                        
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   6 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   7 EXPRESSION_SYSTEM_STRAIN: BL-21 (DE) PLYS;                           
SOURCE   8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   9 EXPRESSION_SYSTEM_PLASMID: PRSET(T7)                                 
KEYWDS    DEATH DOMAIN, APOPTOSIS                                               
EXPDTA    SOLUTION NMR                                                          
AUTHOR    S.F.SUKITS,L.-L.LIN,K.MALAKIAN,R.POWERS,G.-Y.XU                       
REVDAT   3   24-FEB-09 1ICH    1       VERSN                                    
REVDAT   2   01-APR-03 1ICH    1       JRNL                                     
REVDAT   1   01-APR-02 1ICH    0                                                
JRNL        AUTH   S.F.SUKITS,L.L.LIN,S.HSU,K.MALAKIAN,R.POWERS,G.Y.XU          
JRNL        TITL   SOLUTION STRUCTURE OF THE TUMOR NECROSIS FACTOR              
JRNL        TITL 2 RECEPTOR-1 DEATH DOMAIN.                                     
JRNL        REF    J.MOL.BIOL.                   V. 310   895 2001              
JRNL        REFN                   ISSN 0022-2836                               
JRNL        PMID   11453696                                                     
JRNL        DOI    10.1006/JMBI.2001.4790                                       
REMARK   1                                                                      
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : X-PLOR 9.8                                           
REMARK   3   AUTHORS     : BADGER, J., KUMAR, R.A., YIP, P.                     
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: THE STRUCTURES WERE BASED ON A TOTAL      
REMARK   3  OF 1167 DISTANCE CONSTRAINTS FROM NOE AND H-BOND, 117 DIHEDRAL      
REMARK   3  ANGLE CONSTRAINTS FROM 3D HNHA AND TALOS PROGRAM AND 81 PAIRS       
REMARK   3  OF CA/CB CHEMICAL SHIFT CONTRAINTS.                                 
REMARK   4                                                                      
REMARK   4 1ICH COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-APR-01.                  
REMARK 100 THE RCSB ID CODE IS RCSB013155.                                      
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 308                                
REMARK 210  PH                             : 4.0                                
REMARK 210  IONIC STRENGTH                 : 10 MM                              
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 1 MM SAMPLE                        
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 3D_15N-SEPARATED_NOESY, 3D_        
REMARK 210                                   13C-SEPARATED_NOESY, 4D_13C-       
REMARK 210                                   SEPARATED_NOESY                    
REMARK 210  SPECTROMETER FIELD STRENGTH    : 600 MHZ                            
REMARK 210  SPECTROMETER MODEL             : UNITYPLUS                          
REMARK 210  SPECTROMETER MANUFACTURER      : VARIAN                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : X-PLOR 9.8, NMRPIPE 1.8,           
REMARK 210                                   2000, PIPP 4.2.2, 1998             
REMARK 210   METHOD USED                   : DISTANCE GEOMETRY, SIMULATED       
REMARK 210                                   ANNEALING MOLECULAR DYNAMICS       
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : NULL                               
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 1                                  
REMARK 210 CONFORMERS, SELECTION CRITERIA  : NULL                               
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL                
REMARK 210                                                                      
REMARK 210 REMARK: THE STRUCTURE WAS DETERMININED USING 3D TRIPLE-              
REMARK 210  RESONANCE EXPERIMENTS WITH THE ENHANCED-SENSITIVITY PULSE           
REMARK 210  FIELD GRADIENT APPROACH.                                            
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER;                   
REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                            
REMARK 465     RES C SSSEQI                                                     
REMARK 465     MET A   315                                                      
REMARK 465     ALA A   316                                                      
REMARK 465     HIS A   317                                                      
REMARK 465     LYS A   318                                                      
REMARK 465     PRO A   319                                                      
REMARK 465     GLN A   320                                                      
REMARK 465     SER A   321                                                      
REMARK 465     LEU A   322                                                      
REMARK 465     ASP A   323                                                      
REMARK 465     THR A   324                                                      
REMARK 465     ASP A   325                                                      
REMARK 465     ASP A   326                                                      
REMARK 465     GLY A   414                                                      
REMARK 465     PRO A   415                                                      
REMARK 465     ALA A   416                                                      
REMARK 465     ALA A   417                                                      
REMARK 465     LEU A   418                                                      
REMARK 465     PRO A   419                                                      
REMARK 465     PRO A   420                                                      
REMARK 465     ALA A   421                                                      
REMARK 465     PRO A   422                                                      
REMARK 465     SER A   423                                                      
REMARK 465     LEU A   424                                                      
REMARK 465     LEU A   425                                                      
REMARK 465     ARG A   426                                                      
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    ASN A 363       90.89    179.96                                   
REMARK 500    ALA A 387       34.22     71.77                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: PLANAR GROUPS                                              
REMARK 500                                                                      
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL                 
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE                    
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN                    
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS                        
REMARK 500 AN RMSD GREATER THAN THIS VALUE                                      
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        RMS     TYPE                                    
REMARK 500    ARG A 341         0.26    SIDE_CHAIN                              
REMARK 500    ARG A 348         0.32    SIDE_CHAIN                              
REMARK 500    ARG A 358         0.22    SIDE_CHAIN                              
REMARK 500    ARG A 365         0.27    SIDE_CHAIN                              
REMARK 500    ARG A 368         0.25    SIDE_CHAIN                              
REMARK 500    ARG A 379         0.18    SIDE_CHAIN                              
REMARK 500    ARG A 380         0.25    SIDE_CHAIN                              
REMARK 500    ARG A 381         0.21    SIDE_CHAIN                              
REMARK 500    ARG A 384         0.21    SIDE_CHAIN                              
REMARK 500    ARG A 385         0.27    SIDE_CHAIN                              
REMARK 500    ARG A 394         0.28    SIDE_CHAIN                              
REMARK 500    ARG A 397         0.30    SIDE_CHAIN                              
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
DBREF  1ICH A  316   426  UNP    P19438   TNR1A_HUMAN    345    455             
SEQADV 1ICH MET A  315  UNP  P19438              INITIATING METHIONINE          
SEQADV 1ICH LYS A  347  UNP  P19438    ARG   376 ENGINEERED                     
SEQRES   1 A  112  MET ALA HIS LYS PRO GLN SER LEU ASP THR ASP ASP PRO          
SEQRES   2 A  112  ALA THR LEU TYR ALA VAL VAL GLU ASN VAL PRO PRO LEU          
SEQRES   3 A  112  ARG TRP LYS GLU PHE VAL LYS ARG LEU GLY LEU SER ASP          
SEQRES   4 A  112  HIS GLU ILE ASP ARG LEU GLU LEU GLN ASN GLY ARG CYS          
SEQRES   5 A  112  LEU ARG GLU ALA GLN TYR SER MET LEU ALA THR TRP ARG          
SEQRES   6 A  112  ARG ARG THR PRO ARG ARG GLU ALA THR LEU GLU LEU LEU          
SEQRES   7 A  112  GLY ARG VAL LEU ARG ASP MET ASP LEU LEU GLY CYS LEU          
SEQRES   8 A  112  GLU ASP ILE GLU GLU ALA LEU CYS GLY PRO ALA ALA LEU          
SEQRES   9 A  112  PRO PRO ALA PRO SER LEU LEU ARG                              
HELIX    1   1 PRO A  327  VAL A  337  1                                  11    
HELIX    2   2 ARG A  341  GLY A  350  1                                  10    
HELIX    3   3 SER A  352  ASN A  363  1                                  12    
HELIX    4   4 CYS A  366  THR A  382  1                                  17    
HELIX    5   5 ALA A  387  MET A  399  1                                  13    
HELIX    6   6 LEU A  401  CYS A  413  1                                  13    
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000