PDB Short entry for 1MH6 HEADER PROTEIN BINDING 19-AUG-02 1MH6 TITLE SOLUTION STRUCTURE OF THE TRANSPOSON TN5-ENCODING BLEOMYCIN-BINDING TITLE 2 PROTEIN, BLMT COMPND MOL_ID: 1; COMPND 2 MOLECULE: BLEOMYCIN RESISTANCE PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BLMT; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PKKTRP KEYWDS ANTIBIOTIC RESISTANCE, TRANSPOSABLE ELEMENT, PROTEIN BINDING EXPDTA SOLUTION NMR MDLTYP MINIMIZED AVERAGE AUTHOR T.KUMAGAI,K.OHTANI,Y.TSUBOI,T.KOIKE,M.SUGIYAMA REVDAT 3 23-FEB-22 1MH6 1 REMARK REVDAT 2 24-FEB-09 1MH6 1 VERSN REVDAT 1 19-FEB-03 1MH6 0 JRNL AUTH T.KUMAGAI,K.OHTANI,Y.TSUBOI,T.KOIKE,M.SUGIYAMA JRNL TITL SOLUTION STRUCTURE OF THE TRANSPOSON TN5-ENCODING JRNL TITL 2 BLEOMYCIN-BINDING PROTEIN COMPLEXED WITH AN ACTIVATED JRNL TITL 3 BLEOMYCIN ANALOGUE. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DISCOVER 2000 REMARK 3 AUTHORS : MOLECULAR SIMULATIONS INC. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1MH6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-AUG-02. REMARK 100 THE DEPOSITION ID IS D_1000016908. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 0.20 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY; HMBC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : ECP REMARK 210 SPECTROMETER MANUFACTURER : JEOL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DISCOVER 2000 REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 RES CSSEQI ATOMS REMARK 470 GLU A 298 CB CG CD OE1 OE2 REMARK 470 GLU B 98 CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H ALA A 205 O ASP B 42 1.57 REMARK 500 OD2 ASP A 213 HG SER A 216 1.57 REMARK 500 OD2 ASP B 13 HG SER B 16 1.57 REMARK 500 HH TYR A 273 OE2 GLU A 283 1.58 REMARK 500 HH TYR B 73 OE2 GLU B 83 1.58 REMARK 500 HH TYR A 221 OD2 ASP A 308 1.59 REMARK 500 HH TYR B 21 OD2 ASP B 108 1.59 REMARK 500 C ASP A 242 O ASP B 3 2.09 REMARK 500 O ASP A 203 CA ASP B 42 2.18 REMARK 500 O ASP A 203 N ASP B 42 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 212 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 PHE A 214 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG A 223 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 231 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 240 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 HIS A 250 ND1 - CE1 - NE2 ANGL. DEV. = 8.3 DEGREES REMARK 500 ARG A 265 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 265 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 274 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 290 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 HIS A 292 ND1 - CE1 - NE2 ANGL. DEV. = 9.0 DEGREES REMARK 500 ARG A 315 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG B 12 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 PHE B 14 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG B 23 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 31 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 40 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 HIS B 50 ND1 - CE1 - NE2 ANGL. DEV. = 8.3 DEGREES REMARK 500 ARG B 65 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG B 65 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 74 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG B 90 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 HIS B 92 ND1 - CE1 - NE2 ANGL. DEV. = 9.1 DEGREES REMARK 500 ARG B 115 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 203 92.42 -60.62 REMARK 500 ASP A 232 -138.95 -112.14 REMARK 500 ALA A 257 39.55 -83.18 REMARK 500 PRO A 294 84.55 -64.35 REMARK 500 TRP A 299 -44.47 -154.90 REMARK 500 ILE A 325 -63.84 -98.72 REMARK 500 ASP B 3 92.42 -60.57 REMARK 500 ASP B 32 -138.92 -112.05 REMARK 500 ALA B 57 39.60 -83.19 REMARK 500 PRO B 94 84.54 -64.33 REMARK 500 TRP B 99 -44.51 -154.92 REMARK 500 ILE B 125 -63.81 -98.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 267 ASP A 268 147.28 REMARK 500 ASP B 67 ASP B 68 147.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 223 0.09 SIDE CHAIN REMARK 500 ARG B 23 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1MH6 A 202 326 UNP P13081 BLE_KLEPN 2 126 DBREF 1MH6 B 2 126 UNP P13081 BLE_KLEPN 2 126 SEQRES 1 A 125 THR ASP GLN ALA THR PRO ASN LEU PRO SER ARG ASP PHE SEQRES 2 A 125 ASP SER THR ALA ALA PHE TYR GLU ARG LEU GLY PHE GLY SEQRES 3 A 125 ILE VAL PHE ARG ASP ALA GLY TRP MET ILE LEU GLN ARG SEQRES 4 A 125 GLY ASP LEU MET LEU GLU PHE PHE ALA HIS PRO GLY LEU SEQRES 5 A 125 ASP PRO LEU ALA SER TRP PHE SER CYS CYS LEU ARG LEU SEQRES 6 A 125 ASP ASP LEU ALA GLU PHE TYR ARG GLN CYS LYS SER VAL SEQRES 7 A 125 GLY ILE GLN GLU THR SER SER GLY TYR PRO ARG ILE HIS SEQRES 8 A 125 ALA PRO GLU LEU GLN GLU TRP GLY GLY THR MET ALA ALA SEQRES 9 A 125 LEU VAL ASP PRO ASP GLY THR LEU LEU ARG LEU ILE GLN SEQRES 10 A 125 ASN GLU LEU LEU ALA GLY ILE SER SEQRES 1 B 125 THR ASP GLN ALA THR PRO ASN LEU PRO SER ARG ASP PHE SEQRES 2 B 125 ASP SER THR ALA ALA PHE TYR GLU ARG LEU GLY PHE GLY SEQRES 3 B 125 ILE VAL PHE ARG ASP ALA GLY TRP MET ILE LEU GLN ARG SEQRES 4 B 125 GLY ASP LEU MET LEU GLU PHE PHE ALA HIS PRO GLY LEU SEQRES 5 B 125 ASP PRO LEU ALA SER TRP PHE SER CYS CYS LEU ARG LEU SEQRES 6 B 125 ASP ASP LEU ALA GLU PHE TYR ARG GLN CYS LYS SER VAL SEQRES 7 B 125 GLY ILE GLN GLU THR SER SER GLY TYR PRO ARG ILE HIS SEQRES 8 B 125 ALA PRO GLU LEU GLN GLU TRP GLY GLY THR MET ALA ALA SEQRES 9 B 125 LEU VAL ASP PRO ASP GLY THR LEU LEU ARG LEU ILE GLN SEQRES 10 B 125 ASN GLU LEU LEU ALA GLY ILE SER HELIX 1 1 ASP A 215 GLU A 222 1 8 HELIX 2 2 ARG A 223 GLY A 225 5 3 HELIX 3 3 ASP A 268 GLY A 280 1 13 HELIX 4 4 GLU A 320 ILE A 325 1 6 HELIX 5 5 ASP B 15 GLU B 22 1 8 HELIX 6 6 ARG B 23 GLY B 25 5 3 HELIX 7 7 ASP B 68 GLY B 80 1 13 HELIX 8 8 GLU B 120 ILE B 125 1 6 SHEET 1 A 5 GLN A 204 PRO A 207 0 SHEET 2 A 5 SER B 61 LEU B 66 -1 O CYS B 63 N THR A 206 SHEET 3 A 5 LEU B 113 GLN B 118 1 O ILE B 117 N LEU B 66 SHEET 4 A 5 THR B 102 VAL B 107 -1 N LEU B 106 O LEU B 114 SHEET 5 A 5 ARG B 90 LEU B 96 -1 N ARG B 90 O VAL B 107 SHEET 1 B 4 PRO A 210 SER A 211 0 SHEET 2 B 4 LEU A 243 ALA A 249 1 O PHE A 248 N SER A 211 SHEET 3 B 4 TRP A 235 ARG A 240 -1 N LEU A 238 O LEU A 245 SHEET 4 B 4 GLY A 227 ARG A 231 -1 N GLY A 227 O GLN A 239 SHEET 1 C 5 ARG A 290 LEU A 296 0 SHEET 2 C 5 THR A 302 VAL A 307 -1 O VAL A 307 N ARG A 290 SHEET 3 C 5 LEU A 313 GLN A 318 -1 O LEU A 314 N LEU A 306 SHEET 4 C 5 SER A 261 LEU A 266 1 N LEU A 266 O ILE A 317 SHEET 5 C 5 GLN B 4 PRO B 7 -1 O THR B 6 N CYS A 263 SHEET 1 D 4 PRO B 10 SER B 11 0 SHEET 2 D 4 LEU B 43 ALA B 49 1 O PHE B 48 N SER B 11 SHEET 3 D 4 TRP B 35 ARG B 40 -1 N LEU B 38 O LEU B 45 SHEET 4 D 4 GLY B 27 ARG B 31 -1 N GLY B 27 O GLN B 39 CISPEP 1 TYR A 288 PRO A 289 0 -2.93 CISPEP 2 TYR B 88 PRO B 89 0 -2.95 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000