PDB Short entry for 1NHZ HEADER HORMONE RECEPTOR 20-DEC-02 1NHZ TITLE CRYSTAL STRUCTURE OF THE ANTAGONIST FORM OF GLUCOCORTICOID RECEPTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOCORTICOID RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUE 500-777, HINGE AND STEROID BINDING DOMAINS; COMPND 5 SYNONYM: GR; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS PROTEIN-LIGAND COMPLEX, ANTI PARALLEL ALPHA HELIX SANDWICH, HORMONE KEYWDS 2 RECEPTOR EXPDTA X-RAY DIFFRACTION AUTHOR B.KAUPPI,C.JAKOB,M.FARNEGARDH,J.YANG,H.AHOLA,M.ALARCON,K.CALLES, AUTHOR 2 O.ENGSTROM,J.HARLAN,S.MUCHMORE,A.-K.RAMQVIST,S.THORELL,L.OHMAN, AUTHOR 3 J.GREER,J.-A.GUSTAFSSON,J.CARLSTEDT-DUKE,M.CARLQUIST REVDAT 6 27-OCT-21 1NHZ 1 SEQADV REVDAT 5 02-SEP-20 1NHZ 1 KEYWDS REMARK SEQADV HETSYN REVDAT 4 13-JUL-11 1NHZ 1 VERSN REVDAT 3 24-FEB-09 1NHZ 1 VERSN REVDAT 2 01-JUL-03 1NHZ 1 TITLE JRNL REVDAT 1 06-MAY-03 1NHZ 0 JRNL AUTH B.KAUPPI,C.JAKOB,M.FARNEGARDH,J.YANG,H.AHOLA,M.ALARCON, JRNL AUTH 2 K.CALLES,O.ENGSTROM,J.HARLAN,S.MUCHMORE,A.-K.RAMQVIST, JRNL AUTH 3 S.THORELL,L.OHMAN,J.GREER,J.-A.GUSTAFSSON,J.CARLSTEDT-DUKE, JRNL AUTH 4 M.CARLQUIST JRNL TITL THE THREE-DIMENSIONAL STRUCTURES OF ANTAGONISTIC AND JRNL TITL 2 AGONISTIC FORMS OF THE GLUCOCORTICOID RECEPTOR JRNL TITL 3 LIGAND-BINDING DOMAIN: RU-486 INDUCES A TRANSCONFORMATION JRNL TITL 4 THAT LEADS TO ACTIVE ANTAGONISM. JRNL REF J.BIOL.CHEM. V. 278 22748 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 12686538 JRNL DOI 10.1074/JBC.M212711200 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.19 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 14072 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 743 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1002 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1960 REMARK 3 BIN FREE R VALUE SET COUNT : 64 REMARK 3 BIN FREE R VALUE : 0.2510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1952 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 128 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.05000 REMARK 3 B22 (A**2) : 2.84000 REMARK 3 B33 (A**2) : -2.89000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.299 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.253 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.156 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.110 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.881 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2050 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1903 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2767 ; 1.797 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4441 ; 2.363 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 237 ; 6.083 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 309 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2174 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 412 ; 0.013 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 487 ; 0.230 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2221 ; 0.232 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1230 ; 0.105 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 103 ; 0.187 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.268 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 62 ; 0.234 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.269 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1193 ; 0.797 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1931 ; 1.538 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 857 ; 2.501 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 836 ; 4.040 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1NHZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-DEC-02. REMARK 100 THE DEPOSITION ID IS D_1000017886. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-FEB-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14815 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 39.260 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : 0.03500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.14100 REMARK 200 R SYM FOR SHELL (I) : 0.12100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, 1, 6-HEXANEDIOL, NASCN, TRIS REMARK 280 -HCL, PH 8.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 37.42950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.88200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.42950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.88200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 7050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 95 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 498 REMARK 465 SER A 499 REMARK 465 ILE A 500 REMARK 465 GLN A 501 REMARK 465 GLN A 502 REMARK 465 ALA A 503 REMARK 465 THR A 504 REMARK 465 THR A 505 REMARK 465 GLY A 506 REMARK 465 VAL A 507 REMARK 465 SER A 508 REMARK 465 GLN A 509 REMARK 465 GLU A 510 REMARK 465 THR A 511 REMARK 465 SER A 512 REMARK 465 GLU A 513 REMARK 465 ASN A 514 REMARK 465 PRO A 515 REMARK 465 GLY A 516 REMARK 465 ASP A 517 REMARK 465 LYS A 518 REMARK 465 THR A 519 REMARK 465 ILE A 520 REMARK 465 VAL A 521 REMARK 465 PRO A 522 REMARK 465 ALA A 523 REMARK 465 THR A 524 REMARK 465 LEU A 525 REMARK 465 PRO A 526 REMARK 465 GLN A 527 REMARK 465 LEU A 528 REMARK 465 THR A 529 REMARK 465 GLN A 760 REMARK 465 ILE A 761 REMARK 465 PRO A 762 REMARK 465 LYS A 763 REMARK 465 TYR A 764 REMARK 465 SER A 765 REMARK 465 ASN A 766 REMARK 465 GLY A 767 REMARK 465 LYS A 777 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 81 O HOH A 105 4455 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 554 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 622 77.70 -104.52 REMARK 500 ASP A 638 -3.02 73.33 REMARK 500 GLU A 705 154.49 155.06 REMARK 500 SER A 708 -63.24 40.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 486 A 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEZ A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEZ A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEZ A 903 DBREF 1NHZ A 500 777 UNP P04150 GCR_HUMAN 500 777 SEQADV 1NHZ GLY A 498 UNP P04150 CLONING ARTIFACT SEQADV 1NHZ SER A 499 UNP P04150 CLONING ARTIFACT SEQADV 1NHZ ASP A 517 UNP P04150 ASN 517 ENGINEERED MUTATION SEQADV 1NHZ SER A 602 UNP P04150 PHE 602 ENGINEERED MUTATION SEQADV 1NHZ ASP A 638 UNP P04150 CYS 638 ENGINEERED MUTATION SEQRES 1 A 280 GLY SER ILE GLN GLN ALA THR THR GLY VAL SER GLN GLU SEQRES 2 A 280 THR SER GLU ASN PRO GLY ASP LYS THR ILE VAL PRO ALA SEQRES 3 A 280 THR LEU PRO GLN LEU THR PRO THR LEU VAL SER LEU LEU SEQRES 4 A 280 GLU VAL ILE GLU PRO GLU VAL LEU TYR ALA GLY TYR ASP SEQRES 5 A 280 SER SER VAL PRO ASP SER THR TRP ARG ILE MET THR THR SEQRES 6 A 280 LEU ASN MET LEU GLY GLY ARG GLN VAL ILE ALA ALA VAL SEQRES 7 A 280 LYS TRP ALA LYS ALA ILE PRO GLY PHE ARG ASN LEU HIS SEQRES 8 A 280 LEU ASP ASP GLN MET THR LEU LEU GLN TYR SER TRP MET SEQRES 9 A 280 SER LEU MET ALA PHE ALA LEU GLY TRP ARG SER TYR ARG SEQRES 10 A 280 GLN SER SER ALA ASN LEU LEU CYS PHE ALA PRO ASP LEU SEQRES 11 A 280 ILE ILE ASN GLU GLN ARG MET THR LEU PRO ASP MET TYR SEQRES 12 A 280 ASP GLN CYS LYS HIS MET LEU TYR VAL SER SER GLU LEU SEQRES 13 A 280 HIS ARG LEU GLN VAL SER TYR GLU GLU TYR LEU CYS MET SEQRES 14 A 280 LYS THR LEU LEU LEU LEU SER SER VAL PRO LYS ASP GLY SEQRES 15 A 280 LEU LYS SER GLN GLU LEU PHE ASP GLU ILE ARG MET THR SEQRES 16 A 280 TYR ILE LYS GLU LEU GLY LYS ALA ILE VAL LYS ARG GLU SEQRES 17 A 280 GLY ASN SER SER GLN ASN TRP GLN ARG PHE TYR GLN LEU SEQRES 18 A 280 THR LYS LEU LEU ASP SER MET HIS GLU VAL VAL GLU ASN SEQRES 19 A 280 LEU LEU ASN TYR CYS PHE GLN THR PHE LEU ASP LYS THR SEQRES 20 A 280 MET SER ILE GLU PHE PRO GLU MET LEU ALA GLU ILE ILE SEQRES 21 A 280 THR ASN GLN ILE PRO LYS TYR SER ASN GLY ASN ILE LYS SEQRES 22 A 280 LYS LEU LEU PHE HIS GLN LYS HET 486 A 800 32 HET HEZ A 901 8 HET HEZ A 902 8 HET HEZ A 903 8 HETNAM 486 11-(4-DIMETHYLAMINO-PHENYL)-17-HYDROXY-13-METHYL-17- HETNAM 2 486 PROP-1-YNYL-1,2,6,7,8,11,12,13,14,15,16,17-DODEC HETNAM 3 486 AHYDRO-CYCLOPENTA[A]PHENANTHREN-3-ONE HETNAM HEZ HEXANE-1,6-DIOL HETSYN 486 RU-486; MIFEPRISTONE FORMUL 2 486 C29 H35 N O2 FORMUL 3 HEZ 3(C6 H14 O2) FORMUL 6 HOH *128(H2 O) HELIX 1 1 THR A 531 GLU A 540 1 10 HELIX 2 2 SER A 555 LYS A 579 1 25 HELIX 3 3 GLY A 583 LEU A 587 5 5 HELIX 4 4 HIS A 588 SER A 617 1 30 HELIX 5 5 GLN A 632 LEU A 636 5 5 HELIX 6 6 ASP A 638 LEU A 656 1 19 HELIX 7 7 SER A 659 LEU A 672 1 14 HELIX 8 8 SER A 682 GLU A 705 1 24 HELIX 9 9 SER A 708 LEU A 733 1 26 HELIX 10 10 THR A 739 ILE A 747 1 9 HELIX 11 11 GLU A 748 THR A 758 1 11 SHEET 1 A 2 LEU A 621 ALA A 624 0 SHEET 2 A 2 LEU A 627 ILE A 629 -1 O ILE A 629 N LEU A 621 SHEET 1 B 2 SER A 674 PRO A 676 0 SHEET 2 B 2 ILE A 769 LYS A 771 -1 O LYS A 770 N VAL A 675 SITE 1 AC1 14 HOH A 126 MET A 560 LEU A 563 GLN A 570 SITE 2 AC1 14 TRP A 600 MET A 601 MET A 604 LEU A 608 SITE 3 AC1 14 ARG A 611 PHE A 623 GLN A 642 MET A 646 SITE 4 AC1 14 LEU A 732 PHE A 740 SITE 1 AC2 8 HOH A 49 HOH A 99 PRO A 541 GLU A 542 SITE 2 AC2 8 LEU A 544 GLN A 570 TRP A 577 LYS A 667 SITE 1 AC3 10 HOH A 3 HOH A 119 GLN A 597 TYR A 598 SITE 2 AC3 10 SER A 599 TRP A 600 MET A 601 SER A 674 SITE 3 AC3 10 LEU A 733 ILE A 769 SITE 1 AC4 5 HOH A 6 HIS A 588 HIS A 645 TYR A 648 SITE 2 AC4 5 GLU A 727 CRYST1 74.859 109.764 39.261 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013358 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009110 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025471 0.00000