PDB Short entry for 1P95 HEADER PROTEIN BINDING 09-MAY-03 1P95 TITLE A STRUCTURAL STUDY OF THE BINDING OF FLAGELLIN BY TOLL-LIKE TITLE 2 RECEPTOR 5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLAGELLIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 56-450; COMPND 5 SYNONYM: PHASE-1-I FLAGELLIN; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TOLL-LIKE RECEPTOR 5; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: FRAGMENT PREDICTED TO BIND FLAGELLIN; COMPND 10 SYNONYM: TOLL/INTERLEUKIN-1 RECEPTOR-LIKE PROTEIN 3 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; SOURCE 3 ORGANISM_COMMON: BACTERIA; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 6 ORGANISM_COMMON: HUMAN KEYWDS COMPLEMENTARY HYDROPATHY, COMPLEX OBTAINED BY KEYWDS 2 CONFORMATIONAL ANALYSIS AND DOCKING EXPDTA THEORETICAL MODEL AUTHOR S.G.JACCHIERI,R.TORQUATO,R.R.BRENTANI REVDAT 1 29-JUL-03 1P95 0 JRNL AUTH S.G.JACCHIERI,R.TORQUATO,R.R.BRENTANI JRNL TITL STRUCTURAL STUDY OF BINDING OF FLAGELLIN BY JRNL TITL 2 TOLL-LIKE RECEPTOR 5 JRNL REF J.BACTERIOL. V. 185 4243 2003 JRNL REFN ASTM JOBAAY US ISSN 0021-9193 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1P95 COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAY-2003. REMARK 100 THE RCSB ID CODE IS RCSB019163. REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: SEARCH OF COMPLEMENTARY HYDROPATHY, CONFORMATIONAL REMARK 220 ANALYSIS, DOCKING REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN B 8 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 155 N - CA - C ANGL. DEV. = -9.8 DEGREES REMARK 500 GLY A 211 N - CA - C ANGL. DEV. = -9.9 DEGREES REMARK 500 LYS A 232 N - CA - C ANGL. DEV. =-10.5 DEGREES REMARK 500 GLY A 254 N - CA - C ANGL. DEV. = 9.3 DEGREES REMARK 500 THR A 301 N - CA - C ANGL. DEV. = 11.1 DEGREES REMARK 500 THR A 347 N - CA - C ANGL. DEV. = 10.3 DEGREES REMARK 500 ASP A 353 N - CA - C ANGL. DEV. =-12.0 DEGREES REMARK 500 THR A 355 N - CA - C ANGL. DEV. = 11.7 DEGREES REMARK 500 ALA A 381 N - CA - C ANGL. DEV. =-10.1 DEGREES REMARK 500 LEU A 396 CA - CB - CG ANGL. DEV. = 9.5 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 355 160.75 88.34 DBREF 1P95 B 1 10 UNP O60602 TLR5_HUMAN 551 560 DBREF 1P95 A 56 450 UNP P06179 FLIC_SALTY 56 450 SEQADV 1P95 ALA A 426 UNP P06179 GLY 426 CONFLICT SEQRES 1 A 395 ASN ILE LYS GLY LEU THR GLN ALA SER ARG ASN ALA ASN SEQRES 2 A 395 ASP GLY ILE SER ILE ALA GLN THR THR GLU GLY ALA LEU SEQRES 3 A 395 ASN GLU ILE ASN ASN ASN LEU GLN ARG VAL ARG GLU LEU SEQRES 4 A 395 ALA VAL GLN SER ALA ASN SER THR ASN SER GLN SER ASP SEQRES 5 A 395 LEU ASP SER ILE GLN ALA GLU ILE THR GLN ARG LEU ASN SEQRES 6 A 395 GLU ILE ASP ARG VAL SER GLY GLN THR GLN PHE ASN GLY SEQRES 7 A 395 VAL LYS VAL LEU ALA GLN ASP ASN THR LEU THR ILE GLN SEQRES 8 A 395 VAL GLY ALA ASN ASP GLY GLU THR ILE ASP ILE ASP LEU SEQRES 9 A 395 LYS GLN ILE ASN SER GLN THR LEU GLY LEU ASP THR LEU SEQRES 10 A 395 ASN VAL GLN GLN LYS TYR LYS VAL SER ASP THR ALA ALA SEQRES 11 A 395 THR VAL THR GLY TYR ALA ASP THR THR ILE ALA LEU ASP SEQRES 12 A 395 ASN SER THR PHE LYS ALA SER ALA THR GLY LEU GLY GLY SEQRES 13 A 395 THR ASP GLN LYS ILE ASP GLY ASP LEU LYS PHE ASP ASP SEQRES 14 A 395 THR THR GLY LYS TYR TYR ALA LYS VAL THR VAL THR GLY SEQRES 15 A 395 GLY THR GLY LYS ASP GLY TYR TYR GLU VAL SER VAL ASP SEQRES 16 A 395 LYS THR ASN GLY GLU VAL THR LEU ALA GLY GLY ALA THR SEQRES 17 A 395 SER PRO LEU THR GLY GLY LEU PRO ALA THR ALA THR GLU SEQRES 18 A 395 ASP VAL LYS ASN VAL GLN VAL ALA ASN ALA ASP LEU THR SEQRES 19 A 395 GLU ALA LYS ALA ALA LEU THR ALA ALA GLY VAL THR GLY SEQRES 20 A 395 THR ALA SER VAL VAL LYS MET SER TYR THR ASP ASN ASN SEQRES 21 A 395 GLY LYS THR ILE ASP GLY GLY LEU ALA VAL LYS VAL GLY SEQRES 22 A 395 ASP ASP TYR TYR SER ALA THR GLN ASN LYS ASP GLY SER SEQRES 23 A 395 ILE SER ILE ASN THR THR LYS TYR THR ALA ASP ASP GLY SEQRES 24 A 395 THR SER LYS THR ALA LEU ASN LYS LEU GLY GLY ALA ASP SEQRES 25 A 395 GLY LYS THR GLU VAL VAL SER ILE GLY GLY LYS THR TYR SEQRES 26 A 395 ALA ALA SER LYS ALA GLU GLY HIS ASN PHE LYS ALA GLN SEQRES 27 A 395 PRO ASP LEU ALA GLU ALA ALA ALA THR THR THR GLU ASN SEQRES 28 A 395 PRO LEU GLN LYS ILE ASP ALA ALA LEU ALA GLN VAL ASP SEQRES 29 A 395 THR LEU ARG SER ASP LEU ALA ALA VAL GLN ASN ARG PHE SEQRES 30 A 395 ASN SER ALA ILE THR ASN LEU GLY ASN THR VAL ASN ASN SEQRES 31 A 395 LEU THR SER ALA ARG SEQRES 1 B 10 GLU ILE LEU ASP ILE SER ARG ASN GLN LEU HELIX 1 1 ILE A 57 ALA A 99 1 43 HELIX 2 2 SER A 104 THR A 129 1 26 HELIX 3 3 ASP A 198 PHE A 202 5 5 HELIX 4 4 ALA A 206 GLY A 210 5 5 HELIX 5 5 LEU A 288 ALA A 298 1 11 HELIX 6 6 ALA A 382 GLU A 386 1 5 HELIX 7 7 ASN A 406 SER A 448 1 43 HELIX 8 8 GLU B 1 LEU B 10 1 10 SHEET 1 A 2 ASN A 141 GLN A 146 0 SHEET 2 A 2 THR A 154 LEU A 159 -1 O LEU A 159 N ASN A 141 SHEET 1 B 5 LYS A 179 ALA A 184 0 SHEET 2 B 5 ALA A 304 THR A 312 -1 O THR A 312 N LYS A 179 SHEET 3 B 5 THR A 318 VAL A 327 -1 O LYS A 326 N SER A 305 SHEET 4 B 5 ASP A 330 GLN A 336 -1 O ASP A 330 N VAL A 327 SHEET 5 B 5 ILE A 342 ILE A 344 -1 O SER A 343 N THR A 335 SHEET 1 C 2 TYR A 190 ALA A 196 0 SHEET 2 C 2 ASN A 280 ALA A 284 -1 O VAL A 283 N ALA A 191 SHEET 1 D 4 ASP A 213 ILE A 216 0 SHEET 2 D 4 TYR A 229 THR A 236 -1 O THR A 236 N ASP A 213 SHEET 3 D 4 GLY A 243 VAL A 249 -1 O TYR A 245 N ALA A 231 SHEET 4 D 4 VAL A 256 LEU A 258 -1 O THR A 257 N SER A 248 SHEET 1 E 4 ASP A 213 ILE A 216 0 SHEET 2 E 4 TYR A 229 THR A 236 -1 O THR A 236 N ASP A 213 SHEET 3 E 4 LEU A 220 PHE A 222 -1 N LYS A 221 O TYR A 230 SHEET 4 E 4 GLU A 276 VAL A 278 -1 O GLU A 276 N PHE A 222 SHEET 1 F 3 ASN A 361 GLY A 364 0 SHEET 2 F 3 THR A 370 ILE A 375 -1 O THR A 370 N GLY A 364 SHEET 3 F 3 LYS A 378 ALA A 381 -1 O LYS A 378 N ILE A 375 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000