PDB Short entry for 1RJO HEADER OXIDOREDUCTASE 19-NOV-03 1RJO TITLE AGAO + XE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHENYLETHYLAMINE OXIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AMINE OXIDASE, COPPER AMINE OXIDASE, AGAO; COMPND 5 EC: 1.4.3.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARTHROBACTER GLOBIFORMIS; SOURCE 3 ORGANISM_TAXID: 1665; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21/DE3; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PAGAO2 KEYWDS CAO, CUAO, COPPER-CONTAINING, AMINE OXIDASE, OXYGEN BINDING SITE, KEYWDS 2 DIOXYGEN BINDING SITE, XENON, TPQ, QUINONE, TRIHYDROXYPHENYLALANINE KEYWDS 3 QUINONE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.M.GUSS,D.M.TRAMBAIOLO,A.P.DUFF REVDAT 4 03-APR-24 1RJO 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 1RJO 1 VERSN REVDAT 2 24-FEB-09 1RJO 1 VERSN REVDAT 1 07-DEC-04 1RJO 0 JRNL AUTH A.P.DUFF,D.M.TRAMBAIOLO,A.E.COHEN,P.J.ELLIS,G.A.JUDA, JRNL AUTH 2 E.M.SHEPARD,D.B.LANGLEY,D.M.DOOLEY,H.C.FREEMAN,J.M.GUSS JRNL TITL USING XENON AS A PROBE FOR DIOXYGEN-BINDING SITES IN COPPER JRNL TITL 2 AMINE OXIDASES JRNL REF J.MOL.BIOL. V. 344 599 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 15533431 JRNL DOI 10.1016/J.JMB.2004.09.075 REMARK 2 REMARK 2 RESOLUTION. 1.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 89771 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4726 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.67 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6282 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE SET COUNT : 337 REMARK 3 BIN FREE R VALUE : 0.2760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4868 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 543 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.40000 REMARK 3 B22 (A**2) : 2.23000 REMARK 3 B33 (A**2) : -0.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.50000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.077 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.075 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.052 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.625 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5033 ; 0.007 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 4512 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6844 ; 1.139 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10442 ; 0.752 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 617 ; 6.136 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 739 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5680 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1084 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 850 ; 0.192 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 5393 ; 0.242 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 3112 ; 0.080 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 389 ; 0.114 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.051 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 25 ; 0.131 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 186 ; 0.303 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 37 ; 0.165 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3085 ; 1.564 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4981 ; 2.462 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1948 ; 2.038 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1863 ; 3.218 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 TLS REFINEMENT WITH FOUR DOMAINS: RESIDUES 9-91, 92-202, 204-228, REMARK 3 229-628. REMARK 3 MATRIX WEIGHT = 0.1, BFACTOR WEIGHT = 0.4 REMARK 4 REMARK 4 1RJO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-NOV-03. REMARK 100 THE DEPOSITION ID IS D_1000020810. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAY-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : OSMIC MIRROS REMARK 200 OPTICS : OSMIC MIRROS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 94497 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.670 REMARK 200 RESOLUTION RANGE LOW (A) : 26.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.28800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.540 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: AGAO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: DROP: 0.0015ML OF PROTEIN SOLUTION REMARK 280 (11.7MG/ML, 50MM HEPES PH 7.0) PLUS 0.0015ML OF RESERVOIR REMARK 280 SOLUTION (1.0-1.5M NH4SO4, 2MM CUSO4, 150MM SODIUM CITRATE PH REMARK 280 6.0-7.5), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 79.00450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.59450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 79.00450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.59450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER OBTAINED BY APPLYING REMARK 300 CRYSTALLOGRAPHIC SYMMETRY TO THE MONOMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 18280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -137.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -34.65379 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 85.38474 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 3 REMARK 465 SER A 4 REMARK 465 THR A 5 REMARK 465 ILE A 6 REMARK 465 GLN A 7 REMARK 465 THR A 8 REMARK 465 PRO A 629 REMARK 465 SER A 630 REMARK 465 GLN A 631 REMARK 465 SER A 632 REMARK 465 GLY A 633 REMARK 465 SER A 634 REMARK 465 HIS A 635 REMARK 465 CYS A 636 REMARK 465 HIS A 637 REMARK 465 GLY A 638 REMARK 465 SER A 639 REMARK 465 ASN A 640 REMARK 465 TRP A 641 REMARK 465 SER A 642 REMARK 465 HIS A 643 REMARK 465 PRO A 644 REMARK 465 GLN A 645 REMARK 465 PHE A 646 REMARK 465 GLU A 647 REMARK 465 LYS A 648 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 51 18.63 55.80 REMARK 500 PHE A 142 -133.16 -130.41 REMARK 500 ASN A 236 10.27 -149.39 REMARK 500 LYS A 242 -17.95 84.85 REMARK 500 ILE A 271 -57.79 -127.60 REMARK 500 LEU A 303 93.36 71.37 REMARK 500 THR A 403 -156.58 -147.82 REMARK 500 ALA A 442 55.79 -150.58 REMARK 500 ASN A 464 55.00 -154.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 701 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 431 NE2 REMARK 620 2 HIS A 433 NE2 101.5 REMARK 620 3 HIS A 592 ND1 100.1 147.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 703 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 440 OD1 REMARK 620 2 MET A 441 O 98.0 REMARK 620 3 ASP A 581 OD1 98.6 130.8 REMARK 620 4 ILE A 582 O 93.8 106.9 117.8 REMARK 620 5 HOH A1219 O 168.0 70.1 90.8 88.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XE A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XE A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XE A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XE A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XE A 905 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XE A 909 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XE A 910 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1AV4 RELATED DB: PDB REMARK 900 AGAO DBREF 1RJO A 3 638 UNP P46881 PAOX_ARTGO 3 638 SEQADV 1RJO TPQ A 382 UNP P46881 TYR 382 MODIFIED RESIDUE SEQADV 1RJO SER A 639 UNP P46881 CLONING ARTIFACT SEQADV 1RJO ASN A 640 UNP P46881 CLONING ARTIFACT SEQADV 1RJO TRP A 641 UNP P46881 CLONING ARTIFACT SEQADV 1RJO SER A 642 UNP P46881 CLONING ARTIFACT SEQADV 1RJO HIS A 643 UNP P46881 CLONING ARTIFACT SEQADV 1RJO PRO A 644 UNP P46881 CLONING ARTIFACT SEQADV 1RJO GLN A 645 UNP P46881 CLONING ARTIFACT SEQADV 1RJO PHE A 646 UNP P46881 CLONING ARTIFACT SEQADV 1RJO GLU A 647 UNP P46881 CLONING ARTIFACT SEQADV 1RJO LYS A 648 UNP P46881 CLONING ARTIFACT SEQRES 1 A 646 PRO SER THR ILE GLN THR ALA SER PRO PHE ARG LEU ALA SEQRES 2 A 646 SER ALA GLY GLU ILE SER GLU VAL GLN GLY ILE LEU ARG SEQRES 3 A 646 THR ALA GLY LEU LEU GLY PRO GLU LYS ARG ILE ALA TYR SEQRES 4 A 646 LEU GLY VAL LEU ASP PRO ALA ARG GLY ALA GLY SER GLU SEQRES 5 A 646 ALA GLU ASP ARG ARG PHE ARG VAL PHE ILE HIS ASP VAL SEQRES 6 A 646 SER GLY ALA ARG PRO GLN GLU VAL THR VAL SER VAL THR SEQRES 7 A 646 ASN GLY THR VAL ILE SER ALA VAL GLU LEU ASP THR ALA SEQRES 8 A 646 ALA THR GLY GLU LEU PRO VAL LEU GLU GLU GLU PHE GLU SEQRES 9 A 646 VAL VAL GLU GLN LEU LEU ALA THR ASP GLU ARG TRP LEU SEQRES 10 A 646 LYS ALA LEU ALA ALA ARG ASN LEU ASP VAL SER LYS VAL SEQRES 11 A 646 ARG VAL ALA PRO LEU SER ALA GLY VAL PHE GLU TYR ALA SEQRES 12 A 646 GLU GLU ARG GLY ARG ARG ILE LEU ARG GLY LEU ALA PHE SEQRES 13 A 646 VAL GLN ASP PHE PRO GLU ASP SER ALA TRP ALA HIS PRO SEQRES 14 A 646 VAL ASP GLY LEU VAL ALA TYR VAL ASP VAL VAL SER LYS SEQRES 15 A 646 GLU VAL THR ARG VAL ILE ASP THR GLY VAL PHE PRO VAL SEQRES 16 A 646 PRO ALA GLU HIS GLY ASN TYR THR ASP PRO GLU LEU THR SEQRES 17 A 646 GLY PRO LEU ARG THR THR GLN LYS PRO ILE SER ILE THR SEQRES 18 A 646 GLN PRO GLU GLY PRO SER PHE THR VAL THR GLY GLY ASN SEQRES 19 A 646 HIS ILE GLU TRP GLU LYS TRP SER LEU ASP VAL GLY PHE SEQRES 20 A 646 ASP VAL ARG GLU GLY VAL VAL LEU HIS ASN ILE ALA PHE SEQRES 21 A 646 ARG ASP GLY ASP ARG LEU ARG PRO ILE ILE ASN ARG ALA SEQRES 22 A 646 SER ILE ALA GLU MET VAL VAL PRO TYR GLY ASP PRO SER SEQRES 23 A 646 PRO ILE ARG SER TRP GLN ASN TYR PHE ASP THR GLY GLU SEQRES 24 A 646 TYR LEU VAL GLY GLN TYR ALA ASN SER LEU GLU LEU GLY SEQRES 25 A 646 CYS ASP CYS LEU GLY ASP ILE THR TYR LEU SER PRO VAL SEQRES 26 A 646 ILE SER ASP ALA PHE GLY ASN PRO ARG GLU ILE ARG ASN SEQRES 27 A 646 GLY ILE CYS MET HIS GLU GLU ASP TRP GLY ILE LEU ALA SEQRES 28 A 646 LYS HIS SER ASP LEU TRP SER GLY ILE ASN TYR THR ARG SEQRES 29 A 646 ARG ASN ARG ARG MET VAL ILE SER PHE PHE THR THR ILE SEQRES 30 A 646 GLY ASN TPQ ASP TYR GLY PHE TYR TRP TYR LEU TYR LEU SEQRES 31 A 646 ASP GLY THR ILE GLU PHE GLU ALA LYS ALA THR GLY VAL SEQRES 32 A 646 VAL PHE THR SER ALA PHE PRO GLU GLY GLY SER ASP ASN SEQRES 33 A 646 ILE SER GLN LEU ALA PRO GLY LEU GLY ALA PRO PHE HIS SEQRES 34 A 646 GLN HIS ILE PHE SER ALA ARG LEU ASP MET ALA ILE ASP SEQRES 35 A 646 GLY PHE THR ASN ARG VAL GLU GLU GLU ASP VAL VAL ARG SEQRES 36 A 646 GLN THR MET GLY PRO GLY ASN GLU ARG GLY ASN ALA PHE SEQRES 37 A 646 SER ARG LYS ARG THR VAL LEU THR ARG GLU SER GLU ALA SEQRES 38 A 646 VAL ARG GLU ALA ASP ALA ARG THR GLY ARG THR TRP ILE SEQRES 39 A 646 ILE SER ASN PRO GLU SER LYS ASN ARG LEU ASN GLU PRO SEQRES 40 A 646 VAL GLY TYR LYS LEU HIS ALA HIS ASN GLN PRO THR LEU SEQRES 41 A 646 LEU ALA ASP PRO GLY SER SER ILE ALA ARG ARG ALA ALA SEQRES 42 A 646 PHE ALA THR LYS ASP LEU TRP VAL THR ARG TYR ALA ASP SEQRES 43 A 646 ASP GLU ARG TYR PRO THR GLY ASP PHE VAL ASN GLN HIS SEQRES 44 A 646 SER GLY GLY ALA GLY LEU PRO SER TYR ILE ALA GLN ASP SEQRES 45 A 646 ARG ASP ILE ASP GLY GLN ASP ILE VAL VAL TRP HIS THR SEQRES 46 A 646 PHE GLY LEU THR HIS PHE PRO ARG VAL GLU ASP TRP PRO SEQRES 47 A 646 ILE MET PRO VAL ASP THR VAL GLY PHE LYS LEU ARG PRO SEQRES 48 A 646 GLU GLY PHE PHE ASP ARG SER PRO VAL LEU ASP VAL PRO SEQRES 49 A 646 ALA ASN PRO SER GLN SER GLY SER HIS CYS HIS GLY SER SEQRES 50 A 646 ASN TRP SER HIS PRO GLN PHE GLU LYS MODRES 1RJO TPQ A 382 TYR HET TPQ A 382 14 HET CU A 701 1 HET NA A 703 1 HET SO4 A1101 5 HET XE A 901 1 HET XE A 902 1 HET XE A 903 1 HET XE A 904 1 HET XE A 905 1 HET XE A 909 1 HET XE A 910 1 HET GOL A1201 6 HET GOL A1202 6 HET GOL A1203 10 HETNAM TPQ 5-(2-CARBOXY-2-AMINOETHYL)-2-HYDROXY-1,4-BENZOQUINONE HETNAM CU COPPER (II) ION HETNAM NA SODIUM ION HETNAM SO4 SULFATE ION HETNAM XE XENON HETNAM GOL GLYCEROL HETSYN TPQ 5-(2-CARBOXY-2-AMINOETHYL)-4-HYDROXY-1,2-BENZOQUINONE; HETSYN 2 TPQ 2,4,5-TRIHYDROXYPHENYLALANINE QUINONE; TOPA QUINONE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 TPQ C9 H9 N O5 FORMUL 2 CU CU 2+ FORMUL 3 NA NA 1+ FORMUL 4 SO4 O4 S 2- FORMUL 5 XE 7(XE) FORMUL 12 GOL 3(C3 H8 O3) FORMUL 15 HOH *543(H2 O) HELIX 1 1 SER A 16 ALA A 30 1 15 HELIX 2 2 ASP A 91 GLY A 96 1 6 HELIX 3 3 LEU A 101 PHE A 105 5 5 HELIX 4 4 GLU A 106 ALA A 113 1 8 HELIX 5 5 ASP A 115 ARG A 125 1 11 HELIX 6 6 ASP A 128 SER A 130 5 3 HELIX 7 7 TYR A 144 ARG A 148 5 5 HELIX 8 8 SER A 166 ALA A 169 5 4 HELIX 9 9 ASP A 206 GLY A 211 1 6 HELIX 10 10 LEU A 303 ALA A 308 5 6 HELIX 11 11 ARG A 479 GLU A 482 5 4 HELIX 12 12 ASP A 488 GLY A 492 5 5 HELIX 13 13 SER A 528 ALA A 534 1 7 HELIX 14 14 ALA A 535 LYS A 539 5 5 HELIX 15 15 GLY A 566 ALA A 572 1 7 HELIX 16 16 ARG A 595 TRP A 599 5 5 SHEET 1 A 4 LYS A 37 VAL A 44 0 SHEET 2 A 4 ARG A 59 ASP A 66 -1 O HIS A 65 N ARG A 38 SHEET 3 A 4 GLN A 73 SER A 78 -1 O VAL A 75 N VAL A 62 SHEET 4 A 4 THR A 83 GLU A 89 -1 O THR A 83 N SER A 78 SHEET 1 B 4 VAL A 132 SER A 138 0 SHEET 2 B 4 ILE A 152 VAL A 159 -1 O ARG A 154 N LEU A 137 SHEET 3 B 4 PRO A 171 ASP A 180 -1 O ALA A 177 N GLY A 155 SHEET 4 B 4 GLU A 185 ASP A 191 -1 O GLU A 185 N ASP A 180 SHEET 1 C 6 THR A 231 THR A 233 0 SHEET 2 C 6 HIS A 237 TRP A 240 -1 O HIS A 237 N THR A 233 SHEET 3 C 6 TRP A 243 ASP A 250 -1 O LEU A 245 N ILE A 238 SHEET 4 C 6 GLY A 254 ASP A 264 -1 O VAL A 256 N GLY A 248 SHEET 5 C 6 ARG A 267 PRO A 283 -1 O ALA A 275 N LEU A 257 SHEET 6 C 6 ASN A 295 PHE A 297 -1 O TYR A 296 N VAL A 282 SHEET 1 D 9 THR A 231 THR A 233 0 SHEET 2 D 9 HIS A 237 TRP A 240 -1 O HIS A 237 N THR A 233 SHEET 3 D 9 TRP A 243 ASP A 250 -1 O LEU A 245 N ILE A 238 SHEET 4 D 9 GLY A 254 ASP A 264 -1 O VAL A 256 N GLY A 248 SHEET 5 D 9 ARG A 267 PRO A 283 -1 O ALA A 275 N LEU A 257 SHEET 6 D 9 HIS A 431 MET A 441 -1 O ILE A 434 N VAL A 281 SHEET 7 D 9 ILE A 582 HIS A 592 -1 O VAL A 584 N LEU A 439 SHEET 8 D 9 LEU A 541 ARG A 545 -1 N TRP A 542 O TRP A 585 SHEET 9 D 9 VAL A 484 ARG A 485 -1 N ARG A 485 O LEU A 541 SHEET 1 E10 THR A 322 LEU A 324 0 SHEET 2 E10 ILE A 342 SER A 356 -1 O MET A 344 N THR A 322 SHEET 3 E10 ASN A 363 ILE A 379 -1 O VAL A 372 N HIS A 345 SHEET 4 E10 TPQ A 382 TYR A 391 -1 O TYR A 384 N THR A 377 SHEET 5 E10 ILE A 396 GLY A 404 -1 O GLU A 397 N TYR A 389 SHEET 6 E10 MET A 602 PRO A 613 -1 O VAL A 607 N ALA A 400 SHEET 7 E10 PRO A 509 ALA A 516 -1 N LYS A 513 O ARG A 612 SHEET 8 E10 THR A 494 LYS A 503 -1 N TRP A 495 O LEU A 514 SHEET 9 E10 ARG A 449 ARG A 457 -1 N GLU A 453 O THR A 494 SHEET 10 E10 PHE A 470 LEU A 477 -1 O LEU A 477 N VAL A 450 SHEET 1 F 2 VAL A 327 SER A 329 0 SHEET 2 F 2 PRO A 335 GLU A 337 -1 O ARG A 336 N ILE A 328 SHEET 1 G 3 SER A 409 ALA A 410 0 SHEET 2 G 3 LEU A 426 PRO A 429 -1 O GLY A 427 N SER A 409 SHEET 3 G 3 ILE A 419 ALA A 423 -1 N LEU A 422 O LEU A 426 SSBOND 1 CYS A 317 CYS A 343 1555 1555 2.03 LINK C ASN A 381 N TPQ A 382 1555 1555 1.34 LINK C TPQ A 382 N ASP A 383 1555 1555 1.33 LINK NE2 HIS A 431 CU CU A 701 1555 1555 2.06 LINK NE2 HIS A 433 CU CU A 701 1555 1555 2.03 LINK OD1 ASP A 440 NA NA A 703 1555 1555 2.39 LINK O MET A 441 NA NA A 703 1555 1555 2.32 LINK OD1 ASP A 581 NA NA A 703 1555 1555 2.40 LINK O ILE A 582 NA NA A 703 1555 1555 2.49 LINK ND1 HIS A 592 CU CU A 701 1555 1555 2.04 LINK NA NA A 703 O HOH A1219 1555 1555 2.71 CISPEP 1 TRP A 599 PRO A 600 0 3.52 SITE 1 AC1 4 HIS A 431 HIS A 433 HIS A 592 HOH A1745 SITE 1 AC2 5 ASP A 440 MET A 441 ASP A 581 ILE A 582 SITE 2 AC2 5 HOH A1219 SITE 1 AC3 11 ASP A 316 CYS A 317 LEU A 318 HIS A 345 SITE 2 AC3 11 GLY A 350 ARG A 367 TYR A 387 HOH A1234 SITE 3 AC3 11 HOH A1428 HOH A1518 HOH A1606 SITE 1 AC4 3 ILE A 238 LEU A 245 LEU A 390 SITE 1 AC5 2 ALA A 402 LEU A 590 SITE 1 AC6 1 ARG A 71 SITE 1 AC7 3 ILE A 373 TRP A 388 LEU A 390 SITE 1 AC8 5 VAL A 23 GLN A 24 ILE A 39 LEU A 42 SITE 2 AC8 5 GLY A 333 SITE 1 AC9 2 LEU A 42 VAL A 327 SITE 1 BC1 2 TRP A 359 HOH A1746 SITE 1 BC2 10 ARG A 532 ARG A 533 THR A 554 PHE A 557 SITE 2 BC2 10 HIS A 561 SER A 562 GLY A 563 GLY A 564 SITE 3 BC2 10 ALA A 565 HOH A1256 SITE 1 BC3 7 ASN A 126 ASP A 161 VAL A 197 ALA A 199 SITE 2 BC3 7 HOH A1475 HOH A1493 HOH A1563 SITE 1 BC4 5 ASP A 444 GLY A 445 PHE A 446 THR A 447 SITE 2 BC4 5 ASN A 499 CRYST1 158.009 63.189 92.149 90.00 112.09 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006329 0.000000 0.002568 0.00000 SCALE2 0.000000 0.015826 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011711 0.00000