PDB Short entry for 1W2S HEADER IMMUNE SYSTEM 08-JUL-04 1W2S TITLE SOLUTION STRUCTURE OF CR2 SCR 1-2 IN ITS COMPLEX WITH C3D TITLE 2 BY X-RAY SCATTERING COMPND MOL_ID: 1; COMPND 2 MOLECULE: COMPLEMENT C3 PRECURSOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: C3D; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: COMPLEMENT RECEPTOR TYPE 2 PRECURSOR,; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: CR2 SCR 1-2, COMPLEMENT C3D RECEPTOR, COMPND 10 EPSTEIN-BARR VIRUS RECEPTOR, EBV RECEPTOR, CD21 ANTIGEN; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET11B; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS IMMUNE SYSTEM, X-RAY SCATTERING, ANALYTICAL KEYWDS 2 ULTRACENTRIFUGATION, COMPLEMENT, THROMBOSPONDIN TYPE I KEYWDS 3 REPEATS, CONSTRAINED MODELLING, GLYCOPROTEIN, IMMUNOLOGY EXPDTA SOLUTION SCATTERING NUMMDL 6 MDLTYP CA ATOMS ONLY, CHAIN A, B AUTHOR H.E.GILBERT,J.T.EATON,J.P.HANNAN,V.M.HOLERS,S.J.PERKINS REVDAT 3 07-APR-10 1W2S 1 VERSN REVDAT 2 24-FEB-09 1W2S 1 VERSN REVDAT 1 29-SEP-05 1W2S 0 JRNL AUTH H.E.GILBERT,J.T.EATON,J.P.HANNAN,V.M.HOLERS, JRNL AUTH 2 S.J.PERKINS JRNL TITL SOLUTION STRUCTURE OF THE COMPLEX BETWEEN CR2 SCR JRNL TITL 2 1-2 AND C3D OF HUMAN COMPLEMENT: AN X-RAY JRNL TITL 3 SCATTERING AND SEDIMENTATION MODELLING STUDY. JRNL REF J.MOL.BIOL. V. 346 859 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 15713468 JRNL DOI 10.1016/J.JMB.2004.12.006 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : INSIGHT II 98 REMARK 3 AUTHORS : MSI REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 449 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1W2S COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-JUL-04. REMARK 100 THE PDBE ID CODE IS EBI-20111. REMARK 265 REMARK 265 EXPERIMENTAL DETAILS REMARK 265 REMARK 265 EXPERIMENT TYPE : SMALL ANGLE X-RAY SCATTERING REMARK 265 DATA ACQUISITION REMARK 265 RADIATION/NEUTRON SOURCE : ESRF BEAMLINE ID02 REMARK 265 SYNCHROTRON (Y/N) : Y REMARK 265 BEAMLINE TYPE : NULL REMARK 265 BEAMLINE INSTRUMENT : NULL REMARK 265 DETECTOR TYPE : FRELON CCD CAMERA REMARK 265 DETECTOR MANUFACTURER DETAILS : NULL REMARK 265 TEMPERATURE (KELVIN) : 288 REMARK 265 PH : 7.4 REMARK 265 NUMBER OF TIME FRAMES USED : 1 REMARK 265 PROTEIN CONCENTRATION RANGE (MG/ML) : 0.4-4.3 REMARK 265 SAMPLE BUFFER : 10 MM HEPES, REMARK 265 50 MM NACL REMARK 265 DATA REDUCTION SOFTWARE : MULTICCD REMARK 265 GUINIER MEAN RADIUS OF GYRATION (NM) : 2.44 REMARK 265 SIGMA MEAN RADIUS OF GYRATION : 0.1 REMARK 265 R(XS-1) MEAN CROSS SECTIONAL RADII (NM) : NULL REMARK 265 R(XS-1) SIGMA MEAN CROSS SECTIONAL RADII : NULL REMARK 265 R(XS-2) MEAN CROSS SECTIONAL RADII (NM) : NULL REMARK 265 R(XS-2) SIGMA MEAN CROSS SECTIONAL RADII : NULL REMARK 265 P(R) PROTEIN LENGTH (NM) : 9 REMARK 265 REMARK 265 DATA ANALYSIS AND MODEL FITTING: REMARK 265 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 265 SOFTWARE USED : INSIGHT II, SCTPL7, GNOM REMARK 265 SOFTWARE AUTHORS : MSI REMARK 265 STARTING MODEL : NULL REMARK 265 REMARK 265 CONFORMERS, NUMBER CALCULATED : NULL REMARK 265 CONFORMERS, NUMBER SUBMITTED : 6 REMARK 265 CONFORMERS, SELECTION CRITERIA : NULL REMARK 265 REMARK 265 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 265 REMARK 265 OTHER DETAILS: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1C3D RELATED DB: PDB REMARK 900 X-RAY CRYSTAL STRUCTURE OF C3D: A C3 REMARK 900 FRAGMENT AND LIGAND FOR COMPLEMENT RECEPTOR 2 REMARK 900 RELATED ID: 1GHQ RELATED DB: PDB REMARK 900 CR2-C3D COMPLEX STRUCTURE REMARK 900 RELATED ID: 1LY2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF UNLIGANDED HUMAN CD21 REMARK 900 SCR1-SCR2(COMPLEMENT RECEPTOR TYPE 2) REMARK 900 RELATED ID: 1W2S RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF CR2 SCR 1-2 BY REMARK 900 X-RAY SCATTERING DBREF 1W2S A 1 2 PDB 1W2S 1W2S 1 2 DBREF 1W2S A 3 294 UNP P01024 CO3_HUMAN 996 1287 DBREF 1W2S A 295 295 PDB 1W2S 1W2S 295 295 DBREF 1W2S A 296 307 UNP P01024 CO3_HUMAN 1288 1299 DBREF 1W2S B 1 4 PDB 1W2S 1W2S 1 4 DBREF 1W2S B 5 137 UNP P20023 CR2_HUMAN 21 153 DBREF 1W2S B 138 142 PDB 1W2S 1W2S 138 142 SEQADV 1W2S ALA A 17 UNP P01024 CYS 1010 CONFLICT SEQADV 1W2S GLN B 67 UNP P20023 GLU 83 CONFLICT SEQRES 1 A 307 MET LEU ASP ALA GLU ARG LEU LYS HIS LEU ILE VAL THR SEQRES 2 A 307 PRO SER GLY ALA GLY GLU GLN ASN MET ILE GLY MET THR SEQRES 3 A 307 PRO THR VAL ILE ALA VAL HIS TYR LEU ASP GLU THR GLU SEQRES 4 A 307 GLN TRP GLU LYS PHE GLY LEU GLU LYS ARG GLN GLY ALA SEQRES 5 A 307 LEU GLU LEU ILE LYS LYS GLY TYR THR GLN GLN LEU ALA SEQRES 6 A 307 PHE ARG GLN PRO SER SER ALA PHE ALA ALA PHE VAL LYS SEQRES 7 A 307 ARG ALA PRO SER THR TRP LEU THR ALA TYR VAL VAL LYS SEQRES 8 A 307 VAL PHE SER LEU ALA VAL ASN LEU ILE ALA ILE ASP SER SEQRES 9 A 307 GLN VAL LEU CYS GLY ALA VAL LYS TRP LEU ILE LEU GLU SEQRES 10 A 307 LYS GLN LYS PRO ASP GLY VAL PHE GLN GLU ASP ALA PRO SEQRES 11 A 307 VAL ILE HIS GLN GLU MET ILE GLY GLY LEU ARG ASN ASN SEQRES 12 A 307 ASN GLU LYS ASP MET ALA LEU THR ALA PHE VAL LEU ILE SEQRES 13 A 307 SER LEU GLN GLU ALA LYS ASP ILE CYS GLU GLU GLN VAL SEQRES 14 A 307 ASN SER LEU PRO GLY SER ILE THR LYS ALA GLY ASP PHE SEQRES 15 A 307 LEU GLU ALA ASN TYR MET ASN LEU GLN ARG SER TYR THR SEQRES 16 A 307 VAL ALA ILE ALA GLY TYR ALA LEU ALA GLN MET GLY ARG SEQRES 17 A 307 LEU LYS GLY PRO LEU LEU ASN LYS PHE LEU THR THR ALA SEQRES 18 A 307 LYS ASP LYS ASN ARG TRP GLU ASP PRO GLY LYS GLN LEU SEQRES 19 A 307 TYR ASN VAL GLU ALA THR SER TYR ALA LEU LEU ALA LEU SEQRES 20 A 307 LEU GLN LEU LYS ASP PHE ASP PHE VAL PRO PRO VAL VAL SEQRES 21 A 307 ARG TRP LEU ASN GLU GLN ARG TYR TYR GLY GLY GLY TYR SEQRES 22 A 307 GLY SER THR GLN ALA THR PHE MET VAL PHE GLN ALA LEU SEQRES 23 A 307 ALA GLN TYR GLN LYS ASP ALA PRO SER ASP HIS GLN GLU SEQRES 24 A 307 LEU ASN LEU ASP VAL SER LEU GLN SEQRES 1 B 142 GLU ALA GLU ALA ILE SER CYS GLY SER PRO PRO PRO ILE SEQRES 2 B 142 LEU ASN GLY ARG ILE SER TYR TYR SER THR PRO ILE ALA SEQRES 3 B 142 VAL GLY THR VAL ILE ARG TYR SER CYS SER GLY THR PHE SEQRES 4 B 142 ARG LEU ILE GLY GLU LYS SER LEU LEU CYS ILE THR LYS SEQRES 5 B 142 ASP LYS VAL ASP GLY THR TRP ASP LYS PRO ALA PRO LYS SEQRES 6 B 142 CYS GLN TYR PHE ASN LYS TYR SER SER CYS PRO GLU PRO SEQRES 7 B 142 ILE VAL PRO GLY GLY TYR LYS ILE ARG GLY SER THR PRO SEQRES 8 B 142 TYR ARG HIS GLY ASP SER VAL THR PHE ALA CYS LYS THR SEQRES 9 B 142 ASN PHE SER MET ASN GLY ASN LYS SER VAL TRP CYS GLN SEQRES 10 B 142 ALA ASN ASN MET TRP GLY PRO THR ARG LEU PRO THR CYS SEQRES 11 B 142 VAL SER VAL PHE PRO LEU GLU GLN LYS LEU ILE SER CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000