PDB Short entry for 2AIN HEADER CELL ADHESION/TRANSFERASE 30-JUL-05 2AIN TITLE SOLUTION STRUCTURE OF THE AF-6 PDZ DOMAIN COMPLEXED WITH THE C- TITLE 2 TERMINAL PEPTIDE FROM THE BCR PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: AFADIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: AF-6 PDZ DOMAIN; COMPND 5 SYNONYM: AF-6 PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 6-MER PEPTIDE FROM BREAKPOINT CLUSTER REGION PROTEIN; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: C-TERMINAL PEPTIDE; COMPND 11 EC: 2.7.1.-; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B (+); SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS. KEYWDS AF-6 PDZ DOMAIN-BCR COMPLEX, CELL ADHESION-TRANSFERASE COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Q.CHEN,J.WU,Y.SHI REVDAT 4 09-MAR-22 2AIN 1 REMARK SEQADV REVDAT 3 19-JAN-10 2AIN 1 JRNL REVDAT 2 24-FEB-09 2AIN 1 VERSN REVDAT 1 18-JUL-06 2AIN 0 JRNL AUTH Q.CHEN,X.NIU,Y.XU,J.WU,Y.SHI JRNL TITL SOLUTION STRUCTURE AND BACKBONE DYNAMICS OF THE AF-6 PDZ JRNL TITL 2 DOMAIN/BCR PEPTIDE COMPLEX. JRNL REF PROTEIN SCI. V. 16 1053 2007 JRNL REFN ISSN 0961-8368 JRNL PMID 17473018 JRNL DOI 10.1110/PS.062440607 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 2.2, CNS 1.1 REMARK 3 AUTHORS : F.DELAGLIO (NMRPIPE), REMARK 3 BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE,JIANG,KUSZEWSKI, REMARK 3 NILGES, PANNU,READ,RICE,SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE COMPLEX STRUCTURE IS SOLVED USING A REMARK 3 TOTAL OF 1606 EXPERIMENTAL RESTRAINTS THAT INCLUDES 1471 REMARK 3 INTRAMOLECULAR NOES, 61 INTERMOLECULAR NOES AND 74 DIHEDRAL REMARK 3 ANGLES RESTRAINTS REMARK 4 REMARK 4 2AIN COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-AUG-05. REMARK 100 THE DEPOSITION ID IS D_1000033938. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.9 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 2.0MM 15N, 13C-LABELED AF-6 PDZ REMARK 210 DOMAIN, 50MM PHOSPHATE BUFFER REMARK 210 (PH 5.9), 1MM EDTA, 10%(V/V) D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3, CNS 1.1, CSI 1.0, REMARK 210 MOLMOL 2K.2 REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING, MOLECULAR DYNAMICS, REMARK 210 TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: INTERMOLECULAR INTERACTIONS WERE IDENTIFIED IN A 13C/15N REMARK 210 -FILTERED (F1), 13C-EDITED(F3) 3D NOESY SPECTRUM REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 2 41.43 -159.49 REMARK 500 1 GLU A 3 98.97 62.18 REMARK 500 1 PRO A 4 -173.77 -67.31 REMARK 500 1 ASN A 15 37.42 -168.41 REMARK 500 1 ARG A 50 -61.87 -133.16 REMARK 500 1 LEU A 58 -59.31 -126.52 REMARK 500 1 ARG A 79 43.93 -82.96 REMARK 500 2 LYS A 2 -174.31 62.55 REMARK 500 2 PRO A 4 -164.42 -62.66 REMARK 500 2 LYS A 13 96.75 -68.26 REMARK 500 2 ALA A 44 -60.47 -95.25 REMARK 500 2 ARG A 50 30.79 -141.02 REMARK 500 2 ARG A 79 44.45 -92.42 REMARK 500 2 SER A 81 -164.66 -103.07 REMARK 500 3 PRO A 4 -178.53 -58.36 REMARK 500 3 GLN A 14 -60.75 -92.11 REMARK 500 3 ASN A 15 36.38 -157.86 REMARK 500 3 LEU A 65 42.22 -109.11 REMARK 500 3 ARG A 79 42.67 -91.31 REMARK 500 3 SER B 101 100.84 179.53 REMARK 500 4 LYS A 2 82.50 63.54 REMARK 500 4 PRO A 4 -171.47 -62.50 REMARK 500 4 ASN A 15 44.82 -163.68 REMARK 500 4 LEU A 58 -58.83 -122.41 REMARK 500 4 VAL A 66 83.62 -68.88 REMARK 500 4 THR B 102 -151.89 -98.96 REMARK 500 4 GLU B 103 44.89 -174.11 REMARK 500 5 ASN A 15 42.86 -161.58 REMARK 500 5 LEU A 58 -55.95 -127.00 REMARK 500 5 ARG A 79 32.82 -96.47 REMARK 500 5 PHE B 100 31.58 -170.54 REMARK 500 5 SER B 101 43.45 168.98 REMARK 500 6 ASN A 15 38.11 -158.99 REMARK 500 6 SER A 38 125.54 -178.00 REMARK 500 6 LEU A 58 -55.52 -140.21 REMARK 500 6 LEU A 65 43.67 -96.33 REMARK 500 6 ARG A 79 47.48 -84.20 REMARK 500 7 PRO A 4 -166.02 -62.71 REMARK 500 7 SER A 38 137.83 -175.34 REMARK 500 7 LEU A 58 -53.26 -141.48 REMARK 500 7 LYS A 90 91.37 -69.02 REMARK 500 7 PHE B 100 94.03 70.05 REMARK 500 7 SER B 101 -50.90 -154.23 REMARK 500 7 THR B 102 -172.74 53.65 REMARK 500 7 GLU B 103 51.94 179.35 REMARK 500 8 PRO A 4 -172.18 -69.98 REMARK 500 8 GLN A 14 -58.66 -131.98 REMARK 500 8 ARG A 50 -66.99 -128.24 REMARK 500 8 LEU A 58 -59.02 -148.18 REMARK 500 8 VAL A 66 73.43 -107.39 REMARK 500 REMARK 500 THIS ENTRY HAS 126 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1T2M RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE AF-6 PDZ DOMAIN DBREF 2AIN A 2 93 UNP P55196 AFAD_HUMAN 987 1077 DBREF 2AIN B 99 104 UNP P11274 BCR_HUMAN 1266 1271 SEQADV 2AIN MET A 1 UNP P55196 INITIATING METHIONINE SEQRES 1 A 93 MET LYS GLU PRO GLU ILE ILE THR VAL THR LEU LYS LYS SEQRES 2 A 93 GLN ASN GLY MET GLY LEU SER ILE VAL ALA ALA LYS GLY SEQRES 3 A 93 ALA GLY GLN ASP LYS LEU GLY ILE TYR VAL LYS SER VAL SEQRES 4 A 93 VAL LYS GLY GLY ALA ALA ASP VAL ASP GLY ARG LEU ALA SEQRES 5 A 93 ALA GLY ASP GLN LEU LEU SER VAL ASP GLY ARG SER LEU SEQRES 6 A 93 VAL GLY LEU SER GLN GLU ARG ALA ALA GLU LEU MET THR SEQRES 7 A 93 ARG THR SER SER VAL VAL THR LEU GLU VAL ALA LYS GLN SEQRES 8 A 93 GLY ALA SEQRES 1 B 6 LEU PHE SER THR GLU VAL HELIX 1 1 GLY A 43 GLY A 49 1 7 HELIX 2 2 SER A 69 ARG A 79 1 11 SHEET 1 A 4 GLU A 5 LYS A 12 0 SHEET 2 A 4 VAL A 83 LYS A 90 -1 O VAL A 88 N ILE A 7 SHEET 3 A 4 GLN A 56 VAL A 60 -1 N SER A 59 O GLU A 87 SHEET 4 A 4 ARG A 63 SER A 64 -1 O ARG A 63 N VAL A 60 SHEET 1 B 3 GLY A 33 VAL A 39 0 SHEET 2 B 3 LEU A 19 ALA A 24 -1 N SER A 20 O SER A 38 SHEET 3 B 3 SER B 101 VAL B 104 -1 O THR B 102 N ILE A 21 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000