PDB Short entry for 2BYE
HEADER    LIPASE                                  01-AUG-05   2BYE              
TITLE     NMR SOLUTION STRUCTURE OF PHOSPHOLIPASE C EPSILON RA 1 DOMAIN         
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: PHOSPHOLIPASE C, EPSILON 1;                                
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: RA1 DOMAIN, RESIDUES 2006-2114;                            
COMPND   5 SYNONYM: PHOSPHOLIPASE C EPSILON;                                    
COMPND   6 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);                       
SOURCE   6 EXPRESSION_SYSTEM_TAXID: 469008;                                     
SOURCE   7 EXPRESSION_SYSTEM_VARIANT: C41;                                      
SOURCE   8 EXPRESSION_SYSTEM_PLASMID: PTRIEX4                                   
KEYWDS    PHOSPHOLIPASE C EPSILON, RAS ASSOCIATION DOMAIN, UBIQUITIN SUPERFOLD, 
KEYWDS   2 LIPASE                                                               
EXPDTA    SOLUTION NMR                                                          
NUMMDL    20                                                                    
AUTHOR    T.D.BUNNEY,R.HARRIS,N.L.GANDARILLAS,M.B.JOSEPHS,S.M.ROE,H.F.PATERSON, 
AUTHOR   2 F.RODRIGUES-LIMA,D.ESPOSITO,P.GIESCHIK,L.H.PEARL,P.C.DRISCOLL,       
AUTHOR   3 M.KATAN                                                              
REVDAT   4   15-JAN-20 2BYE    1       REMARK                                   
REVDAT   3   24-JAN-18 2BYE    1       SOURCE                                   
REVDAT   2   24-FEB-09 2BYE    1       VERSN                                    
REVDAT   1   22-FEB-06 2BYE    0                                                
JRNL        AUTH   T.D.BUNNEY,R.HARRIS,N.L.GANDARILLAS,M.B.JOSEPHS,S.M.ROE,     
JRNL        AUTH 2 S.C.SORLI,H.F.PATERSON,F.RODRIGUES-LIMA,D.ESPOSITO,          
JRNL        AUTH 3 C.P.PONTING,P.GIERSCHIK,L.H.PEARL,P.C.DRISCOLL,M.KATAN       
JRNL        TITL   STRUCTURAL AND MECHANISTIC INSIGHTS INTO RAS ASSOCIATION     
JRNL        TITL 2 DOMAINS OF PHOSPHOLIPASE C EPSILON.                          
JRNL        REF    MOL.CELL                      V.  21   495 2006              
JRNL        REFN                   ISSN 1097-2765                               
JRNL        PMID   16483931                                                     
JRNL        DOI    10.1016/J.MOLCEL.2006.01.008                                 
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : XPLOR-NIH                                            
REMARK   3   AUTHORS     : C.D. SCHWIETERS, J.J. KUSZEWSKI, N. TJ               
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: AB INITIO SIMULATED ANNEALING PROTOCOL    
REMARK   3  WITH CARTESIAN MOLECULAR DYNAMICS AND TORSION ANGLE DYNAMICS        
REMARK   3  SIMULATED ANNEALING. A FINAL STEP OF RESTRAINED MOLECULAR           
REMARK   3  DYNAMICS WITH EXPLICIT INCLUSION OF SOLVENT.                        
REMARK   4                                                                      
REMARK   4 2BYE COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-AUG-05.                  
REMARK 100 THE DEPOSITION ID IS D_1290025136.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 298.0                              
REMARK 210  PH                             : 7.0                                
REMARK 210  IONIC STRENGTH                 : 275                                
REMARK 210  PRESSURE                       : 1.0 ATM                            
REMARK 210  SAMPLE CONTENTS                : 90% WATER. 10% D2O                 
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : C13-NOESY; 15N-NOESY               
REMARK 210  SPECTROMETER FIELD STRENGTH    : 800 MHZ                            
REMARK 210  SPECTROMETER MODEL             : INOVA                              
REMARK 210  SPECTROMETER MANUFACTURER      : VARIAN                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : ANSIG, CNS, XPLOR-NIH              
REMARK 210   METHOD USED                   : RESTRAINED SIMULATED ANNEALING,    
REMARK 210                                   WATER REFINEMENT                   
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 100                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 20                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : LOWEST ENERGY STRUCTURE WITH NO    
REMARK 210                                   RESTRAINT VIOLATIONS               
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR      
REMARK 210  SPECTROSCOPY ON 13C, 15N-LABELED PROTEIN.                           
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500  HG13  VAL A   104     HE2  LYS A   106              1.22            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 THR A  43       99.82    -36.58                                   
REMARK 500  1 GLU A  45      -12.00     72.53                                   
REMARK 500  1 GLN A  46      -95.36    -68.17                                   
REMARK 500  1 ILE A  48       15.32     55.93                                   
REMARK 500  1 PRO A  50     -161.03    -56.85                                   
REMARK 500  1 THR A  53     -156.49   -110.35                                   
REMARK 500  1 ASP A  54       23.68    -75.87                                   
REMARK 500  1 LYS A  68      -89.47     66.28                                   
REMARK 500  1 CYS A  71       92.07     60.81                                   
REMARK 500  1 GLN A 108       32.43    -78.32                                   
REMARK 500  2 GLU A   3       80.17    -67.17                                   
REMARK 500  2 LYS A   5      -47.80   -174.97                                   
REMARK 500  2 GLN A  46      -97.53    -69.93                                   
REMARK 500  2 ILE A  48      -43.19     96.14                                   
REMARK 500  2 LYS A  49      109.84    -54.08                                   
REMARK 500  2 PRO A  50     -150.39    -76.31                                   
REMARK 500  2 VAL A  51       77.99   -118.41                                   
REMARK 500  2 THR A  53     -151.37   -112.42                                   
REMARK 500  2 ASP A  54        7.40    -60.61                                   
REMARK 500  2 LYS A  66       17.50   -140.17                                   
REMARK 500  2 GLU A  67     -169.08     63.75                                   
REMARK 500  2 LYS A  68      -46.30     72.06                                   
REMARK 500  2 CYS A  71      103.82   -166.40                                   
REMARK 500  2 GLN A  74       88.39     70.72                                   
REMARK 500  2 TRP A  93      -58.14     70.71                                   
REMARK 500  2 GLU A  97      -61.63   -134.00                                   
REMARK 500  3 GLU A   3       91.73    -55.20                                   
REMARK 500  3 ARG A   4      -71.73   -148.97                                   
REMARK 500  3 LYS A   5       35.41   -154.92                                   
REMARK 500  3 GLN A  46      -96.26    -68.79                                   
REMARK 500  3 ILE A  48      -47.79     78.32                                   
REMARK 500  3 PRO A  50     -146.04    -64.14                                   
REMARK 500  3 THR A  53     -148.20   -117.37                                   
REMARK 500  3 ASP A  54       12.15    -62.91                                   
REMARK 500  3 GLU A  67     -164.73     60.80                                   
REMARK 500  3 LYS A  68      -76.31     73.45                                   
REMARK 500  3 GLU A  70       82.71     36.06                                   
REMARK 500  3 TRP A  93      -57.85     71.71                                   
REMARK 500  3 GLU A  97     -167.18   -124.16                                   
REMARK 500  3 GLN A 108       27.56    -77.40                                   
REMARK 500  4 GLU A   2       73.51     63.08                                   
REMARK 500  4 ARG A   4      -75.54   -142.09                                   
REMARK 500  4 LYS A   5       26.21   -149.40                                   
REMARK 500  4 GLN A  46      -86.49    -70.78                                   
REMARK 500  4 ILE A  48      -51.56     74.05                                   
REMARK 500  4 PRO A  50     -147.51    -59.78                                   
REMARK 500  4 THR A  53     -146.73   -119.19                                   
REMARK 500  4 ASP A  54       16.90    -66.21                                   
REMARK 500  4 GLU A  67     -158.24     59.23                                   
REMARK 500  4 LYS A  68      -79.07     74.83                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS     283 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 2BYF   RELATED DB: PDB                                   
REMARK 900 NMR SOLUTION STRUCTURE OF PHOSPHOLIPASE C EPSILON RA 2 DOMAIN        
REMARK 900 RELATED ID: 6624   RELATED DB: BMRB                                  
DBREF  2BYE A    1     1  PDB    2BYE     2BYE             1      1             
DBREF  2BYE A    2   110  UNP    Q5VWL5   Q5VWL5_HUMAN  2006   2114             
SEQRES   1 A  110  GLY GLU GLU ARG LYS CYS LEU GLN THR HIS ARG VAL THR          
SEQRES   2 A  110  VAL HIS GLY VAL PRO GLY PRO GLU PRO PHE THR VAL PHE          
SEQRES   3 A  110  THR ILE ASN GLY GLY THR LYS ALA LYS GLN LEU LEU GLN          
SEQRES   4 A  110  GLN ILE LEU THR ASN GLU GLN ASP ILE LYS PRO VAL THR          
SEQRES   5 A  110  THR ASP TYR PHE LEU MET GLU GLU LYS TYR PHE ILE SER          
SEQRES   6 A  110  LYS GLU LYS ASN GLU CYS ARG LYS GLN PRO PHE GLN ARG          
SEQRES   7 A  110  ALA ILE GLY PRO GLU GLU GLU ILE MET GLN ILE LEU SER          
SEQRES   8 A  110  SER TRP PHE PRO GLU GLU GLY TYR MET GLY ARG ILE VAL          
SEQRES   9 A  110  LEU LYS THR GLN GLN GLU                                      
HELIX    1   1 LYS A   33  THR A   43  1                                  11    
HELIX    2   2 GLU A   85  TRP A   93  1                                   9    
SHEET    1  AA 2 ARG A  11  VAL A  14  0                                        
SHEET    2  AA 2 THR A  24  THR A  27 -1  O  THR A  24   N  VAL A  14           
SHEET    1  AB 3 GLN A  77  ILE A  80  0                                        
SHEET    2  AB 3 TYR A  55  GLU A  60 -1  O  LEU A  57   N  ILE A  80           
SHEET    3  AB 3 ILE A 103  THR A 107 -1  O  VAL A 104   N  MET A  58           
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000