PDB Short entry for 2CP5 HEADER PROTEIN BINDING 19-MAY-05 2CP5 TITLE SOLUTION STRUCTURE OF THE 1ST CAP-GLY DOMAIN IN HUMAN CLIP-170/RESTIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RESTIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CAP-GLY DOMAIN; COMPND 5 SYNONYM: CYTOPLASMIC LINKER PROTEIN-170 ALPHA-2, CLIP-170, REED- COMPND 6 STERNBERG INTERMEDIATE FILAMENT ASSOCIATED PROTEIN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FB2383_D01; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040816-08; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS MICROTUBULE BINDING, CYTOSKELETON ASSOCIATED PROTEIN, RESTIN, KEYWDS 2 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.SAITO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2CP5 1 REMARK SEQADV REVDAT 2 24-FEB-09 2CP5 1 VERSN REVDAT 1 19-NOV-05 2CP5 0 JRNL AUTH K.SAITO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE 1ST CAP-GLY DOMAIN IN HUMAN JRNL TITL 2 CLIP-170/RESTIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CNS 1.1 REMARK 3 AUTHORS : BRUKER (XWINNMR), REMARK 3 BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE,JIANG,KUSZEWSKI, REMARK 3 NILGES, PANNU,READ,RICE,SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CP5 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000024470. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM PROTEIN, 20MM D-TRIS-HCL, REMARK 210 PH7.0, 100MM NACL, 1MM D-DTT, REMARK 210 0.02% NAN3, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5, CNS REMARK 210 1.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 94.67 -60.41 REMARK 500 1 MET A 8 97.03 -173.62 REMARK 500 1 SER A 9 175.70 60.44 REMARK 500 1 PRO A 13 -173.02 -53.51 REMARK 500 1 ALA A 18 -53.18 -178.37 REMARK 500 1 LYS A 24 77.55 -150.26 REMARK 500 1 LEU A 30 107.43 60.94 REMARK 500 1 LYS A 31 -60.53 -109.79 REMARK 500 1 SER A 45 42.62 -95.63 REMARK 500 1 SER A 46 -178.66 59.50 REMARK 500 1 GLU A 47 125.95 63.35 REMARK 500 1 ALA A 49 -169.07 60.28 REMARK 500 1 SER A 50 -70.10 -130.42 REMARK 500 1 SER A 51 115.45 61.27 REMARK 500 1 THR A 52 -63.34 -171.52 REMARK 500 1 PRO A 53 92.78 -59.16 REMARK 500 1 THR A 57 89.77 60.19 REMARK 500 1 GLU A 60 -178.56 60.21 REMARK 500 1 VAL A 62 99.39 -69.06 REMARK 500 1 ASP A 63 32.58 -142.89 REMARK 500 1 ASN A 76 49.13 -179.22 REMARK 500 1 LYS A 77 82.68 -167.65 REMARK 500 1 LYS A 105 -54.51 -143.24 REMARK 500 1 LYS A 122 -47.43 -150.07 REMARK 500 1 LYS A 134 164.17 60.21 REMARK 500 1 PRO A 138 -176.72 -52.25 REMARK 500 2 SER A 14 -62.14 -146.75 REMARK 500 2 LEU A 16 159.92 60.66 REMARK 500 2 LYS A 17 96.87 60.56 REMARK 500 2 PRO A 19 -169.86 -70.13 REMARK 500 2 ILE A 22 -39.07 -178.21 REMARK 500 2 LEU A 23 79.53 63.85 REMARK 500 2 LYS A 24 84.97 59.68 REMARK 500 2 SER A 27 165.21 61.25 REMARK 500 2 THR A 28 31.18 -162.75 REMARK 500 2 LEU A 30 -62.78 -170.80 REMARK 500 2 LYS A 31 165.39 60.51 REMARK 500 2 THR A 34 -53.62 -167.20 REMARK 500 2 LYS A 48 116.38 62.43 REMARK 500 2 ALA A 49 -56.31 -120.28 REMARK 500 2 SER A 50 -62.71 -173.12 REMARK 500 2 SER A 51 -45.07 -158.45 REMARK 500 2 THR A 52 63.44 63.71 REMARK 500 2 SER A 54 -179.06 -170.80 REMARK 500 2 GLU A 59 28.98 -158.83 REMARK 500 2 PHE A 61 97.36 59.95 REMARK 500 2 VAL A 62 39.40 -98.28 REMARK 500 2 ASP A 63 179.87 61.56 REMARK 500 2 ASN A 76 52.76 -177.89 REMARK 500 2 LYS A 77 82.04 -177.72 REMARK 500 REMARK 500 THIS ENTRY HAS 494 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO002001267.1 RELATED DB: TARGETDB DBREF 2CP5 A 8 135 UNP P30622 REST_HUMAN 1 128 SEQADV 2CP5 GLY A 1 UNP P30622 CLONING ARTIFACT SEQADV 2CP5 SER A 2 UNP P30622 CLONING ARTIFACT SEQADV 2CP5 SER A 3 UNP P30622 CLONING ARTIFACT SEQADV 2CP5 GLY A 4 UNP P30622 CLONING ARTIFACT SEQADV 2CP5 SER A 5 UNP P30622 CLONING ARTIFACT SEQADV 2CP5 SER A 6 UNP P30622 CLONING ARTIFACT SEQADV 2CP5 GLY A 7 UNP P30622 CLONING ARTIFACT SEQADV 2CP5 SER A 136 UNP P30622 CLONING ARTIFACT SEQADV 2CP5 GLY A 137 UNP P30622 CLONING ARTIFACT SEQADV 2CP5 PRO A 138 UNP P30622 CLONING ARTIFACT SEQADV 2CP5 SER A 139 UNP P30622 CLONING ARTIFACT SEQADV 2CP5 SER A 140 UNP P30622 CLONING ARTIFACT SEQADV 2CP5 GLY A 141 UNP P30622 CLONING ARTIFACT SEQRES 1 A 141 GLY SER SER GLY SER SER GLY MET SER MET LEU LYS PRO SEQRES 2 A 141 SER GLY LEU LYS ALA PRO THR LYS ILE LEU LYS PRO GLY SEQRES 3 A 141 SER THR ALA LEU LYS THR PRO THR ALA VAL VAL ALA PRO SEQRES 4 A 141 VAL GLU LYS THR ILE SER SER GLU LYS ALA SER SER THR SEQRES 5 A 141 PRO SER SER GLU THR GLN GLU GLU PHE VAL ASP ASP PHE SEQRES 6 A 141 ARG VAL GLY GLU ARG VAL TRP VAL ASN GLY ASN LYS PRO SEQRES 7 A 141 GLY PHE ILE GLN PHE LEU GLY GLU THR GLN PHE ALA PRO SEQRES 8 A 141 GLY GLN TRP ALA GLY ILE VAL LEU ASP GLU PRO ILE GLY SEQRES 9 A 141 LYS ASN ASP GLY SER VAL ALA GLY VAL ARG TYR PHE GLN SEQRES 10 A 141 CYS GLU PRO LEU LYS GLY ILE PHE THR ARG PRO SER LYS SEQRES 11 A 141 LEU THR ARG LYS VAL SER GLY PRO SER SER GLY HELIX 1 1 ARG A 127 SER A 129 5 3 SHEET 1 A 5 GLY A 123 THR A 126 0 SHEET 2 A 5 GLN A 93 LEU A 99 -1 N ILE A 97 O ILE A 124 SHEET 3 A 5 PRO A 78 GLU A 86 -1 N GLY A 85 O TRP A 94 SHEET 4 A 5 ARG A 70 VAL A 73 -1 N VAL A 71 O GLY A 79 SHEET 5 A 5 LEU A 131 THR A 132 -1 O THR A 132 N TRP A 72 SHEET 1 B 2 SER A 109 VAL A 110 0 SHEET 2 B 2 VAL A 113 ARG A 114 -1 O VAL A 113 N VAL A 110 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000