PDB Short entry for 2CUJ HEADER TRANSCRIPTION 26-MAY-05 2CUJ TITLE SOLUTION STRUCTURE OF SWIRM DOMAIN OF MOUSE TRANSCRIPTIONAL ADAPTOR 2- TITLE 2 LIKE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL ADAPTOR 2-LIKE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SWIRM DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: TADA2L; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P041018-15; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS TRANSCRIPTIONAL REGULATION, NUCLEAR PROTEIN, ADA2, STRUCTURAL KEYWDS 2 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 3 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.YONEYAMA,T.UMEHARA,M.SATO,N.TOCHIO,S.KOSHIBA,M.INOUE,A.TANAKA, AUTHOR 2 T.KIGAWA,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 3 (RSGI) REVDAT 5 09-MAR-22 2CUJ 1 REMARK SEQADV REVDAT 4 24-FEB-09 2CUJ 1 VERSN REVDAT 3 15-MAY-07 2CUJ 3 ATOM REVDAT 2 15-MAY-07 2CUJ 1 JRNL REVDAT 1 26-NOV-05 2CUJ 0 JRNL AUTH M.YONEYAMA,N.TOCHIO,T.UMEHARA,S.KOSHIBA,M.INOUE,T.YABUKI, JRNL AUTH 2 M.AOKI,E.SEKI,T.MATSUDA,S.WATANABE,Y.TOMO,Y.NISHIMURA, JRNL AUTH 3 T.HARADA,T.TERADA,M.SHIROUZU,Y.HAYASHIZAKI,O.OHARA,A.TANAKA, JRNL AUTH 4 T.KIGAWA,S.YOKOYAMA JRNL TITL STRUCTURAL AND FUNCTIONAL DIFFERENCES OF SWIRM DOMAIN JRNL TITL 2 SUBTYPES JRNL REF J.MOL.BIOL. V. 369 222 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17428495 JRNL DOI 10.1016/J.JMB.2007.03.027 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CUJ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000024634. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.36MM SWIRM DOMAIN U-15N, 13C; REMARK 210 20MM D-TRIS-HCL2 (PH7.0), 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9295, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 41.81 39.47 REMARK 500 1 THR A 33 103.67 -40.57 REMARK 500 1 LYS A 63 -72.48 -49.04 REMARK 500 1 GLN A 73 -67.34 -93.64 REMARK 500 1 ARG A 93 -38.36 -36.03 REMARK 500 2 VAL A 16 140.08 -171.54 REMARK 500 2 SER A 20 121.20 -173.29 REMARK 500 2 ASN A 21 120.37 -173.05 REMARK 500 2 PRO A 29 -174.42 -69.77 REMARK 500 2 THR A 33 107.15 -41.09 REMARK 500 2 LYS A 46 -34.66 -39.10 REMARK 500 3 SER A 5 43.02 -109.16 REMARK 500 3 SER A 22 106.07 -44.04 REMARK 500 3 ASN A 31 96.79 -67.06 REMARK 500 3 THR A 33 102.44 -39.10 REMARK 500 3 ASP A 88 122.04 -39.92 REMARK 500 4 ASP A 9 -63.23 -93.25 REMARK 500 4 SER A 13 142.52 -172.37 REMARK 500 4 ARG A 25 137.36 -173.92 REMARK 500 4 THR A 33 106.05 -34.03 REMARK 500 4 GLN A 73 -61.71 -127.51 REMARK 500 4 ALA A 79 -29.12 -38.41 REMARK 500 4 ASP A 88 112.62 -35.52 REMARK 500 5 LEU A 12 124.69 -175.20 REMARK 500 5 SER A 13 144.22 -36.60 REMARK 500 5 PRO A 14 94.07 -69.81 REMARK 500 5 ASN A 21 -57.79 -120.01 REMARK 500 5 THR A 33 105.27 -37.02 REMARK 500 5 GLN A 50 -63.98 -90.99 REMARK 500 5 ASN A 90 -18.89 -48.63 REMARK 500 6 ASP A 9 105.80 -162.83 REMARK 500 6 PRO A 14 95.50 -69.75 REMARK 500 6 THR A 33 104.57 -36.22 REMARK 500 7 PRO A 14 96.21 -69.74 REMARK 500 7 VAL A 16 134.39 -174.55 REMARK 500 7 ASN A 31 94.35 -62.08 REMARK 500 7 THR A 33 112.23 -35.72 REMARK 500 7 LYS A 46 -39.89 -38.29 REMARK 500 7 ARG A 93 -37.60 -38.07 REMARK 500 8 SER A 2 108.45 -169.08 REMARK 500 8 PRO A 14 96.96 -69.76 REMARK 500 8 VAL A 16 170.29 -46.08 REMARK 500 8 SER A 22 144.03 -173.28 REMARK 500 8 ARG A 25 134.54 -171.25 REMARK 500 8 SER A 26 130.64 -37.82 REMARK 500 8 ASN A 31 86.34 -60.91 REMARK 500 8 THR A 33 105.31 -36.06 REMARK 500 8 ASP A 88 125.00 -38.18 REMARK 500 9 THR A 33 103.95 -38.38 REMARK 500 9 GLN A 73 -60.21 -126.02 REMARK 500 REMARK 500 THIS ENTRY HAS 114 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT008012850.1 RELATED DB: TARGETDB DBREF 2CUJ A 8 108 UNP Q8BNK0 Q8BNK0_MOUSE 343 443 SEQADV 2CUJ GLY A 1 UNP Q8BNK0 CLONING ARTIFACT SEQADV 2CUJ SER A 2 UNP Q8BNK0 CLONING ARTIFACT SEQADV 2CUJ SER A 3 UNP Q8BNK0 CLONING ARTIFACT SEQADV 2CUJ GLY A 4 UNP Q8BNK0 CLONING ARTIFACT SEQADV 2CUJ SER A 5 UNP Q8BNK0 CLONING ARTIFACT SEQADV 2CUJ SER A 6 UNP Q8BNK0 CLONING ARTIFACT SEQADV 2CUJ GLY A 7 UNP Q8BNK0 CLONING ARTIFACT SEQRES 1 A 108 GLY SER SER GLY SER SER GLY ILE ASP SER GLY LEU SER SEQRES 2 A 108 PRO SER VAL LEU MET ALA SER ASN SER GLY ARG ARG SER SEQRES 3 A 108 ALA PRO PRO LEU ASN LEU THR GLY LEU PRO GLY THR GLU SEQRES 4 A 108 LYS LEU ASN GLU LYS GLU LYS GLU LEU CYS GLN VAL VAL SEQRES 5 A 108 ARG LEU VAL PRO GLY ALA TYR LEU GLU TYR LYS SER ALA SEQRES 6 A 108 LEU LEU ASN GLU CYS HIS LYS GLN GLY GLY LEU ARG LEU SEQRES 7 A 108 ALA GLN ALA ARG ALA LEU ILE LYS ILE ASP VAL ASN LYS SEQRES 8 A 108 THR ARG LYS ILE TYR ASP PHE LEU ILE ARG GLU GLY TYR SEQRES 9 A 108 ILE THR LYS ALA HELIX 1 1 ASN A 42 VAL A 52 1 11 HELIX 2 2 VAL A 55 GLN A 73 1 19 HELIX 3 3 ARG A 77 LYS A 86 1 10 HELIX 4 4 ASP A 88 ARG A 101 1 14 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000