PDB Short entry for 2DGZ
HEADER    DNA BINDING PROTEIN                     16-MAR-06   2DGZ              
TITLE     SOLUTION STRUCTURE OF THE HELICASE AND RNASE D C-TERMINAL             
TITLE    2 DOMAIN IN WERNER SYNDROME ATP-DEPENDENT HELICASE                     
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: WERNER SYNDROME PROTEIN VARIANT;                           
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: HELICASE AND RNASE D C-TERMINAL DOMAIN;                    
COMPND   5 SYNONYM: WERNER SYNDROME ATP-DEPENDENT HELICASE;                     
COMPND   6 EC: 3.6.1.-;                                                         
COMPND   7 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: WRN;                                                           
SOURCE   6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS;                              
SOURCE   7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   8 EXPRESSION_SYSTEM_PLASMID: P051212-13;                               
SOURCE   9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS                           
KEYWDS    HRDC DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT            
KEYWDS   2 ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN                 
KEYWDS   3 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, DNA                 
KEYWDS   4 BINDING PROTEIN                                                      
EXPDTA    SOLUTION NMR                                                          
NUMMDL    20                                                                    
AUTHOR    C.ABE,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU,                    
AUTHOR   2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE           
AUTHOR   3 (RSGI)                                                               
REVDAT   2   24-FEB-09 2DGZ    1       VERSN                                    
REVDAT   1   16-SEP-06 2DGZ    0                                                
JRNL        AUTH   C.ABE,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU,           
JRNL        AUTH 2 S.YOKOYAMA                                                   
JRNL        TITL   SOLUTION STRUCTURE OF THE HELICASE AND RNASE D               
JRNL        TITL 2 C-TERMINAL DOMAIN IN WERNER SYNDROME ATP-DEPENDENT           
JRNL        TITL 3 HELICASE                                                     
JRNL        REF    TO BE PUBLISHED                                              
JRNL        REFN                                                                
REMARK   1                                                                      
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : CYANA 2.0                                            
REMARK   3   AUTHORS     : GUNTERT,P                                            
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 2DGZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-MAR-06.                  
REMARK 100 THE RCSB ID CODE IS RCSB025407.                                      
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 298                                
REMARK 210  PH                             : 7.0                                
REMARK 210  IONIC STRENGTH                 : 100MM                              
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 20MM D-TRIS-HCL(PH7.0), 100MM      
REMARK 210                                   NACL, 1MM D-DTT, 0.02% NAN3,       
REMARK 210                                   10% D2O                            
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 3D_15N-SEPARATED_NOESY, 3D_        
REMARK 210                                   13C-SEPARATED_NOESY                
REMARK 210  SPECTROMETER FIELD STRENGTH    : 800 MHZ                            
REMARK 210  SPECTROMETER MODEL             : AVANCE                             
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : XWINNMR 3.5, NMRPIPE               
REMARK 210                                   20030801, NMRVIEW 5.0.4,           
REMARK 210                                   KUJIRA 0.932, CYANA 2.0            
REMARK 210   METHOD USED                   : TORSION ANGLE DYNAMICS,            
REMARK 210                                   RESTRAINTED MOLECULAR DYNAMICS     
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 100                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 20                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : TARGET FUNCTION, STRUCTURES        
REMARK 210                                   WITH THE LOWEST ENERGY,            
REMARK 210                                   STRUCTURES WITH THE LEAST          
REMARK 210                                   RESTRAINT VIOLATIONS               
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 ALA A1147      -34.93    -38.38                                   
REMARK 500  1 GLN A1165      -70.23    -59.08                                   
REMARK 500  1 LEU A1232       42.12    -81.37                                   
REMARK 500  1 PRO A1238     -175.34    -69.74                                   
REMARK 500  1 SER A1243      112.07   -166.05                                   
REMARK 500  2 PRO A1143     -173.29    -69.74                                   
REMARK 500  2 PRO A1175      -16.77    -47.98                                   
REMARK 500  2 ILE A1201      102.09    -59.32                                   
REMARK 500  2 ASP A1202      145.83    -31.46                                   
REMARK 500  2 GLU A1206      129.61    -34.26                                   
REMARK 500  2 LEU A1212       34.04    -92.08                                   
REMARK 500  2 SER A1227       46.53     35.49                                   
REMARK 500  2 LEU A1232       47.51    -80.93                                   
REMARK 500  2 GLN A1239       96.69    -59.21                                   
REMARK 500  3 SER A1141      124.08    -37.98                                   
REMARK 500  3 PRO A1175      -17.23    -47.97                                   
REMARK 500  3 ILE A1201       98.14    -55.42                                   
REMARK 500  3 ASP A1202      143.64    -34.58                                   
REMARK 500  3 LEU A1212       32.61    -87.28                                   
REMARK 500  3 PRO A1214      -17.74    -47.97                                   
REMARK 500  3 SER A1227       50.83     33.98                                   
REMARK 500  3 LEU A1232       43.54    -85.49                                   
REMARK 500  4 VAL A1144      168.35    -49.41                                   
REMARK 500  4 PRO A1175      -16.76    -47.97                                   
REMARK 500  4 LEU A1178      -70.09    -57.35                                   
REMARK 500  4 GLU A1206      135.06    -38.86                                   
REMARK 500  4 LEU A1212       35.53    -92.69                                   
REMARK 500  4 PRO A1214      -17.08    -47.95                                   
REMARK 500  4 SER A1227       51.03     34.90                                   
REMARK 500  5 SER A1135       42.23     38.01                                   
REMARK 500  5 SER A1141      115.16   -168.43                                   
REMARK 500  5 GLN A1142       96.00    -32.50                                   
REMARK 500  5 PRO A1175      -17.08    -47.96                                   
REMARK 500  5 LEU A1212       32.26    -89.44                                   
REMARK 500  5 PRO A1214      -18.16    -47.90                                   
REMARK 500  5 SER A1227       51.53     33.70                                   
REMARK 500  5 LEU A1232       44.97    -83.38                                   
REMARK 500  5 LYS A1237       54.70     35.38                                   
REMARK 500  5 PRO A1242        2.65    -69.81                                   
REMARK 500  5 SER A1243      130.06    -35.22                                   
REMARK 500  6 SER A1134      170.38    -55.39                                   
REMARK 500  6 PRO A1143     -176.15    -69.74                                   
REMARK 500  6 GLN A1165      -72.08    -89.24                                   
REMARK 500  6 PRO A1175      -18.47    -47.95                                   
REMARK 500  6 LEU A1212       34.52    -89.85                                   
REMARK 500  6 PRO A1214      -17.15    -48.00                                   
REMARK 500  6 SER A1227       46.48     34.23                                   
REMARK 500  6 LEU A1232       40.60    -86.83                                   
REMARK 500  7 PRO A1175      -16.64    -47.97                                   
REMARK 500  7 ARG A1191       55.05     33.65                                   
REMARK 500  7 ILE A1201      101.20    -53.53                                   
REMARK 500  7 ASP A1202      145.89    -35.30                                   
REMARK 500  7 ALA A1209      -39.51    -33.93                                   
REMARK 500  7 PRO A1214      -16.94    -48.01                                   
REMARK 500  7 LEU A1215      -71.34    -82.24                                   
REMARK 500  7 SER A1227       50.78     33.84                                   
REMARK 500  7 LEU A1232       41.90    -83.97                                   
REMARK 500  7 SER A1240      134.08    -37.23                                   
REMARK 500  7 PRO A1242     -176.29    -69.73                                   
REMARK 500  8 SER A1137       93.79    -69.20                                   
REMARK 500  8 SER A1140       47.29     36.47                                   
REMARK 500  8 GLN A1165      -71.60    -82.00                                   
REMARK 500  8 PRO A1175      -16.68    -48.05                                   
REMARK 500  8 GLU A1206      130.71    -39.06                                   
REMARK 500  8 LEU A1212       32.68    -90.70                                   
REMARK 500  8 PRO A1214      -17.36    -47.99                                   
REMARK 500  8 PHE A1222      -33.86    -38.95                                   
REMARK 500  8 SER A1227       49.29     36.20                                   
REMARK 500  8 LEU A1232       41.16    -84.14                                   
REMARK 500  8 SER A1234       41.94    -89.53                                   
REMARK 500  8 PRO A1238     -178.80    -69.78                                   
REMARK 500  9 SER A1137       44.51    -80.46                                   
REMARK 500  9 SER A1140      132.54    -35.80                                   
REMARK 500  9 VAL A1144      143.62    -36.19                                   
REMARK 500  9 ALA A1147      -35.86    -33.54                                   
REMARK 500  9 PRO A1175      -17.45    -47.92                                   
REMARK 500  9 GLU A1206      127.50    -36.41                                   
REMARK 500  9 LEU A1212       30.90    -88.25                                   
REMARK 500  9 PRO A1214      -18.15    -47.96                                   
REMARK 500  9 PHE A1222      -36.98    -34.09                                   
REMARK 500  9 LEU A1232       48.28    -77.18                                   
REMARK 500  9 SER A1234       44.42    -94.77                                   
REMARK 500  9 GLN A1239      125.55    -35.77                                   
REMARK 500 10 SER A1135      -57.67   -120.67                                   
REMARK 500 10 SER A1137      -52.91   -121.55                                   
REMARK 500 10 VAL A1144      153.77    -47.28                                   
REMARK 500 10 PRO A1175      -16.85    -48.05                                   
REMARK 500 10 ARG A1191       54.95     33.37                                   
REMARK 500 10 LEU A1212       34.85    -91.02                                   
REMARK 500 10 PRO A1214      -19.22    -47.99                                   
REMARK 500 10 SER A1227       42.58     34.38                                   
REMARK 500 10 LEU A1232       40.88    -91.13                                   
REMARK 500 10 PHE A1233      109.39   -174.97                                   
REMARK 500 10 PRO A1242        1.24    -69.78                                   
REMARK 500 11 SER A1137       42.14   -108.04                                   
REMARK 500 11 PRO A1143     -174.54    -69.81                                   
REMARK 500 11 GLN A1165      -70.18    -69.04                                   
REMARK 500 11 PRO A1175      -17.77    -47.98                                   
REMARK 500 11 ARG A1191       52.70     70.61                                   
REMARK 500 11 GLU A1206      114.16    -38.08                                   
REMARK 500 11 LEU A1212       31.47    -85.77                                   
REMARK 500 11 SER A1227       42.69     34.32                                   
REMARK 500 11 LEU A1232       37.01    -83.32                                   
REMARK 500 11 PHE A1233      119.18   -174.99                                   
REMARK 500 11 SER A1234      110.34   -160.51                                   
REMARK 500 11 PRO A1238       86.57    -69.75                                   
REMARK 500 12 GLN A1165      -72.59    -63.35                                   
REMARK 500 12 PRO A1175      -17.42    -48.00                                   
REMARK 500 12 LEU A1212       33.89    -90.18                                   
REMARK 500 12 PRO A1214      -19.14    -47.99                                   
REMARK 500 12 LEU A1232       38.51    -92.74                                   
REMARK 500 12 SER A1243      117.11   -161.90                                   
REMARK 500 13 SER A1137      -57.64   -126.85                                   
REMARK 500 13 PRO A1143     -172.67    -69.76                                   
REMARK 500 13 VAL A1144      170.33    -45.19                                   
REMARK 500 13 PRO A1175      -16.41    -48.02                                   
REMARK 500 13 GLU A1206      151.32    -47.69                                   
REMARK 500 13 LEU A1212       30.36    -84.43                                   
REMARK 500 13 PRO A1214      -17.59    -47.99                                   
REMARK 500 13 SER A1227       49.76     32.55                                   
REMARK 500 13 LEU A1232       40.93    -82.91                                   
REMARK 500 13 SER A1235       91.41    -64.83                                   
REMARK 500 14 SER A1141      146.93    -36.72                                   
REMARK 500 14 PRO A1175      -16.74    -48.00                                   
REMARK 500 14 LEU A1178      -72.34    -61.04                                   
REMARK 500 14 GLU A1206      130.90    -35.44                                   
REMARK 500 14 LEU A1212       30.73    -85.40                                   
REMARK 500 14 PRO A1214      -18.94    -47.91                                   
REMARK 500 14 LEU A1215      -70.77    -79.64                                   
REMARK 500 14 SER A1227       46.77     35.55                                   
REMARK 500 14 LEU A1232       35.79    -86.64                                   
REMARK 500 15 SER A1134      -50.12   -122.36                                   
REMARK 500 15 PRO A1175      -16.79    -47.94                                   
REMARK 500 15 ILE A1201      100.93    -55.45                                   
REMARK 500 15 ASP A1202      143.32    -34.80                                   
REMARK 500 15 GLU A1206      140.63    -34.21                                   
REMARK 500 15 ALA A1209      -39.61    -35.12                                   
REMARK 500 15 LEU A1212       33.84    -91.84                                   
REMARK 500 15 PRO A1214      -17.65    -48.03                                   
REMARK 500 15 PHE A1222      -37.36    -38.36                                   
REMARK 500 15 SER A1227       48.98     33.90                                   
REMARK 500 15 LEU A1232       49.34    -76.73                                   
REMARK 500 15 SER A1243       43.48     35.19                                   
REMARK 500 16 SER A1137      148.56   -174.13                                   
REMARK 500 16 PRO A1143     -173.53    -69.77                                   
REMARK 500 16 PRO A1175      -16.93    -48.04                                   
REMARK 500 16 ARG A1191       54.87     39.62                                   
REMARK 500 16 LEU A1212       32.52    -88.99                                   
REMARK 500 16 PRO A1214      -17.18    -48.03                                   
REMARK 500 16 LEU A1232       43.61    -85.78                                   
REMARK 500 16 LYS A1237      133.55    -35.01                                   
REMARK 500 17 GLN A1142      124.52    -35.85                                   
REMARK 500 17 PRO A1143     -175.86    -69.77                                   
REMARK 500 17 PRO A1175      -16.51    -47.96                                   
REMARK 500 17 ILE A1201      153.39    -43.33                                   
REMARK 500 17 LEU A1212       32.95    -87.17                                   
REMARK 500 17 PRO A1214      -17.57    -47.95                                   
REMARK 500 17 SER A1227       39.52     39.37                                   
REMARK 500 17 SER A1234      113.00   -175.03                                   
REMARK 500 17 SER A1235       52.76    -96.01                                   
REMARK 500 18 SER A1140       40.90     71.86                                   
REMARK 500 18 GLN A1165      -70.15    -80.70                                   
REMARK 500 18 PRO A1175      -16.81    -47.97                                   
REMARK 500 18 ILE A1201      160.01    -42.63                                   
REMARK 500 18 LEU A1212       31.76    -90.88                                   
REMARK 500 18 PRO A1214      -17.14    -48.00                                   
REMARK 500 18 LEU A1215      -70.94    -84.04                                   
REMARK 500 18 LEU A1232       43.53    -83.36                                   
REMARK 500 18 PHE A1233       41.24    -84.75                                   
REMARK 500 18 SER A1234       43.76     35.09                                   
REMARK 500 18 SER A1244      160.60    -48.81                                   
REMARK 500 19 PRO A1175      -17.42    -47.96                                   
REMARK 500 19 LEU A1212       30.05    -84.86                                   
REMARK 500 19 PRO A1214      -17.91    -47.95                                   
REMARK 500 19 PHE A1222      -34.40    -39.94                                   
REMARK 500 19 SER A1227       48.85     34.75                                   
REMARK 500 19 LEU A1232       42.58    -83.51                                   
REMARK 500 19 PRO A1238       81.10    -69.71                                   
REMARK 500 20 ASP A1172       33.63     72.14                                   
REMARK 500 20 LYS A1189      -60.47    -97.42                                   
REMARK 500 20 LEU A1212       32.58    -89.09                                   
REMARK 500 20 PRO A1214      -17.26    -47.90                                   
REMARK 500 20 LEU A1232       44.71    -88.41                                   
REMARK 500 20 THR A1236       40.64    -88.03                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: HSK003001883.1   RELATED DB: TARGETDB                    
DBREF  2DGZ A 1140  1239  UNP    Q14191   WRN_HUMAN     1140   1239             
SEQADV 2DGZ GLY A 1133  UNP  Q14191              CLONING ARTIFACT               
SEQADV 2DGZ SER A 1134  UNP  Q14191              CLONING ARTIFACT               
SEQADV 2DGZ SER A 1135  UNP  Q14191              CLONING ARTIFACT               
SEQADV 2DGZ GLY A 1136  UNP  Q14191              CLONING ARTIFACT               
SEQADV 2DGZ SER A 1137  UNP  Q14191              CLONING ARTIFACT               
SEQADV 2DGZ SER A 1138  UNP  Q14191              CLONING ARTIFACT               
SEQADV 2DGZ GLY A 1139  UNP  Q14191              CLONING ARTIFACT               
SEQADV 2DGZ SER A 1240  UNP  Q14191              CLONING ARTIFACT               
SEQADV 2DGZ GLY A 1241  UNP  Q14191              CLONING ARTIFACT               
SEQADV 2DGZ PRO A 1242  UNP  Q14191              CLONING ARTIFACT               
SEQADV 2DGZ SER A 1243  UNP  Q14191              CLONING ARTIFACT               
SEQADV 2DGZ SER A 1244  UNP  Q14191              CLONING ARTIFACT               
SEQADV 2DGZ GLY A 1245  UNP  Q14191              CLONING ARTIFACT               
SEQRES   1 A  113  GLY SER SER GLY SER SER GLY SER SER GLN PRO VAL ILE          
SEQRES   2 A  113  SER ALA GLN GLU GLN GLU THR GLN ILE VAL LEU TYR GLY          
SEQRES   3 A  113  LYS LEU VAL GLU ALA ARG GLN LYS HIS ALA ASN LYS MET          
SEQRES   4 A  113  ASP VAL PRO PRO ALA ILE LEU ALA THR ASN LYS ILE LEU          
SEQRES   5 A  113  VAL ASP MET ALA LYS MET ARG PRO THR THR VAL GLU ASN          
SEQRES   6 A  113  VAL LYS ARG ILE ASP GLY VAL SER GLU GLY LYS ALA ALA          
SEQRES   7 A  113  MET LEU ALA PRO LEU TRP GLU VAL ILE LYS HIS PHE CYS          
SEQRES   8 A  113  GLN THR ASN SER VAL GLN THR ASP LEU PHE SER SER THR          
SEQRES   9 A  113  LYS PRO GLN SER GLY PRO SER SER GLY                          
HELIX    1   1 SER A 1146  MET A 1171  1                                  26    
HELIX    2   2 PRO A 1174  ALA A 1179  1                                   6    
HELIX    3   3 THR A 1180  ARG A 1191  1                                  12    
HELIX    4   4 THR A 1194  ILE A 1201  1                                   8    
HELIX    5   5 GLY A 1207  MET A 1211  5                                   5    
HELIX    6   6 LEU A 1212  THR A 1225  1                                  14    
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000