PDB Short entry for 2HD5
HEADER    HYDROLASE                               20-JUN-06   2HD5              
TITLE     USP2 IN COMPLEX WITH UBIQUITIN                                        
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2;                   
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: RESIDUES 258-605;                                          
COMPND   5 SYNONYM: UBIQUITIN THIOESTERASE 2, UBIQUITIN-SPECIFIC-PROCESSING     
COMPND   6 PROTEASE 2, DEUBIQUITINATING ENZYME 2, 41 KDA UBIQUITIN-SPECIFIC     
COMPND   7 PROTEASE;                                                            
COMPND   8 EC: 3.1.2.15;                                                        
COMPND   9 ENGINEERED: YES;                                                     
COMPND  10 MOL_ID: 2;                                                           
COMPND  11 MOLECULE: POLYUBIQUITIN;                                             
COMPND  12 CHAIN: B;                                                            
COMPND  13 FRAGMENT: RESIDUES 1-76                                              
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: USP2, UBP41;                                                   
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   8 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3)PLYSS;                        
SOURCE   9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE  10 EXPRESSION_SYSTEM_PLASMID: PET24A;                                   
SOURCE  11 MOL_ID: 2;                                                           
SOURCE  12 ORGANISM_SCIENTIFIC: BOS TAURUS;                                     
SOURCE  13 ORGANISM_COMMON: CATTLE;                                             
SOURCE  14 ORGANISM_TAXID: 9913                                                 
KEYWDS    DEUBIQUITINATING PROTEASE, CYSTEINE PROTEASE, SUBSTRATE ENZYME        
KEYWDS   2 COMPLEX, HYDROLASE                                                   
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    M.RENATUS,M.KROEMER                                                   
REVDAT   4   18-OCT-17 2HD5    1       REMARK                                   
REVDAT   3   24-FEB-09 2HD5    1       VERSN                                    
REVDAT   2   22-AUG-06 2HD5    1       JRNL                                     
REVDAT   1   15-AUG-06 2HD5    0                                                
JRNL        AUTH   M.RENATUS,S.G.PARRADO,A.D'ARCY,U.EIDHOFF,B.GERHARTZ,         
JRNL        AUTH 2 U.HASSIEPEN,B.PIERRAT,R.RIEDL,D.VINZENZ,S.WORPENBERG,        
JRNL        AUTH 3 M.KROEMER                                                    
JRNL        TITL   STRUCTURAL BASIS OF UBIQUITIN RECOGNITION BY THE             
JRNL        TITL 2 DEUBIQUITINATING PROTEASE USP2.                              
JRNL        REF    STRUCTURE                     V.  14  1293 2006              
JRNL        REFN                   ISSN 0969-2126                               
JRNL        PMID   16905103                                                     
JRNL        DOI    10.1016/J.STR.2006.06.012                                    
REMARK   2                                                                      
REMARK   2 RESOLUTION.    1.85 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : CNS                                                  
REMARK   3   AUTHORS     : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-              
REMARK   3               : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,              
REMARK   3               : READ,RICE,SIMONSON,WARREN                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 41.47                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : 0.000                          
REMARK   3   DATA CUTOFF HIGH         (ABS(F)) : 2622971.000                    
REMARK   3   DATA CUTOFF LOW          (ABS(F)) : 0.0000                         
REMARK   3   COMPLETENESS (WORKING+TEST)   (%) : 95.5                           
REMARK   3   NUMBER OF REFLECTIONS             : 28473                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.177                           
REMARK   3   R VALUE            (WORKING SET) : 0.177                           
REMARK   3   FREE R VALUE                     : 0.229                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.000                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 1423                            
REMARK   3   ESTIMATED ERROR OF FREE R VALUE  : 0.006                           
REMARK   3                                                                      
REMARK   3  FIT/AGREEMENT OF MODEL WITH ALL DATA.                               
REMARK   3   R VALUE     (WORKING + TEST SET, NO CUTOFF) : 0.1800               
REMARK   3   R VALUE            (WORKING SET, NO CUTOFF) : 0.1770               
REMARK   3   FREE R VALUE                    (NO CUTOFF) : 0.229                
REMARK   3   FREE R VALUE TEST SET SIZE   (%, NO CUTOFF) : 5.000                
REMARK   3   FREE R VALUE TEST SET COUNT     (NO CUTOFF) : 1423                 
REMARK   3   ESTIMATED ERROR OF FREE R VALUE (NO CUTOFF) : NULL                 
REMARK   3   TOTAL NUMBER OF REFLECTIONS     (NO CUTOFF) : 28473                
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 6                            
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 1.85                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 1.97                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 84.10                        
REMARK   3   REFLECTIONS IN BIN    (WORKING SET) : 3923                         
REMARK   3   BIN R VALUE           (WORKING SET) : 0.2170                       
REMARK   3   BIN FREE R VALUE                    : 0.2640                       
REMARK   3   BIN FREE R VALUE TEST SET SIZE  (%) : 5.00                         
REMARK   3   BIN FREE R VALUE TEST SET COUNT     : 205                          
REMARK   3   ESTIMATED ERROR OF BIN FREE R VALUE : 0.018                        
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 3126                                    
REMARK   3   NUCLEIC ACID ATOMS       : 0                                       
REMARK   3   HETEROGEN ATOMS          : 1                                       
REMARK   3   SOLVENT ATOMS            : 160                                     
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : NULL                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 23.00                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : 1.60000                                              
REMARK   3    B22 (A**2) : -0.29000                                             
REMARK   3    B33 (A**2) : -1.31000                                             
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 1.06000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED COORDINATE ERROR.                                         
REMARK   3   ESD FROM LUZZATI PLOT        (A) : 0.18                            
REMARK   3   ESD FROM SIGMAA              (A) : 0.14                            
REMARK   3   LOW RESOLUTION CUTOFF        (A) : 5.00                            
REMARK   3                                                                      
REMARK   3  CROSS-VALIDATED ESTIMATED COORDINATE ERROR.                         
REMARK   3   ESD FROM C-V LUZZATI PLOT    (A) : 0.24                            
REMARK   3   ESD FROM C-V SIGMAA          (A) : 0.16                            
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES.                                   
REMARK   3   BOND LENGTHS                 (A) : 0.016                           
REMARK   3   BOND ANGLES            (DEGREES) : 1.500                           
REMARK   3   DIHEDRAL ANGLES        (DEGREES) : 21.10                           
REMARK   3   IMPROPER ANGLES        (DEGREES) : 1.000                           
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL MODEL : RESTRAINED                                
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.    RMS    SIGMA                
REMARK   3   MAIN-CHAIN BOND              (A**2) : 1.600 ; 1.500                
REMARK   3   MAIN-CHAIN ANGLE             (A**2) : 2.480 ; 2.000                
REMARK   3   SIDE-CHAIN BOND              (A**2) : 2.460 ; 2.000                
REMARK   3   SIDE-CHAIN ANGLE             (A**2) : 3.610 ; 2.500                
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELING.                                              
REMARK   3   METHOD USED : FLAT MODEL                                           
REMARK   3   KSOL        : 0.39                                                 
REMARK   3   BSOL        : 45.55                                                
REMARK   3                                                                      
REMARK   3  NCS MODEL : NULL                                                    
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS.                         RMS   SIGMA/WEIGHT          
REMARK   3   GROUP  1  POSITIONAL            (A) : NULL  ; NULL                 
REMARK   3   GROUP  1  B-FACTOR           (A**2) : NULL  ; NULL                 
REMARK   3                                                                      
REMARK   3  PARAMETER FILE  1  : PROTEIN_REP.PARAM                              
REMARK   3  PARAMETER FILE  2  : WATER_REP.PARAM                                
REMARK   3  PARAMETER FILE  3  : ION.PARAM                                      
REMARK   3  PARAMETER FILE  4  : NULL                                           
REMARK   3  TOPOLOGY FILE  1   : PROTEIN.TOP                                    
REMARK   3  TOPOLOGY FILE  2   : WATER.TOP                                      
REMARK   3  TOPOLOGY FILE  3   : ION.TOP                                        
REMARK   3  TOPOLOGY FILE  4   : NULL                                           
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 2HD5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUN-06.                  
REMARK 100 THE DEPOSITION ID IS D_1000038216.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 15-JAN-05                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 6.5                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : N                                  
REMARK 200  RADIATION SOURCE               : ROTATING ANODE                     
REMARK 200  BEAMLINE                       : NULL                               
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.5418                             
REMARK 200  MONOCHROMATOR                  : CONFOCAL MAX-FLUX MULTILAYER       
REMARK 200                                   OPTICS                             
REMARK 200  OPTICS                         : CONFOCAL MAX-FLUX                  
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : RIGAKU SATURN 92                   
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : DENZO, CRYSTALCLEAR (MSC/RIGAKU)   
REMARK 200  DATA SCALING SOFTWARE          : SCALEPACK                          
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 28474                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 1.850                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 50.200                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : 0.000                              
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 95.5                               
REMARK 200  DATA REDUNDANCY                : 4.100                              
REMARK 200  R MERGE                    (I) : NULL                               
REMARK 200  R SYM                      (I) : 0.06100                            
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 16.1000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 1.93                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 81.8                               
REMARK 200  DATA REDUNDANCY IN SHELL       : NULL                               
REMARK 200  R MERGE FOR SHELL          (I) : NULL                               
REMARK 200  R SYM FOR SHELL            (I) : 0.21300                            
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 4.000                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: PHASER                                                
REMARK 200 STARTING MODEL: 1OGW AND 1NBF, CHAIN C                               
REMARK 200                                                                      
REMARK 200 REMARK: CRYSTALS WERE DEHYDRATED PRIOR TO THE DATA COLLECTION.       
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 29.52                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.75                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM MGCL2, 25% PEG 3550, 100 MM BIS   
REMARK 280  -TRIS, PROTEIN AT 11.8 MG/ML, PH 6.5, LIQUID DIFFUSION,             
REMARK 280  TEMPERATURE 295K                                                    
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1                          
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,Y,-Z                                                 
REMARK 290       3555   X+1/2,Y+1/2,Z                                           
REMARK 290       4555   -X+1/2,Y+1/2,-Z                                         
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1   3  1.000000  0.000000  0.000000       53.45150            
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000       22.76700            
REMARK 290   SMTRY3   3  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   4 -1.000000  0.000000  0.000000       53.45150            
REMARK 290   SMTRY2   4  0.000000  1.000000  0.000000       22.76700            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC                    
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 3830 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 15570 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 375                                                                      
REMARK 375 SPECIAL POSITION                                                     
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS            
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL          
REMARK 375 POSITIONS.                                                           
REMARK 375                                                                      
REMARK 375 ATOM RES CSSEQI                                                      
REMARK 375      HOH A 160  LIES ON A SPECIAL POSITION.                          
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     MET A   205                                                      
REMARK 465     ASN A   206                                                      
REMARK 465     SER A   207                                                      
REMARK 465     LYS A   208                                                      
REMARK 465     SER A   209                                                      
REMARK 465     ALA A   210                                                      
REMARK 465     LEU A   246                                                      
REMARK 465     HIS A   247                                                      
REMARK 465     HIS A   248                                                      
REMARK 465     THR A   313B                                                     
REMARK 465     LEU A   313C                                                     
REMARK 465     ARG A   313D                                                     
REMARK 465     PRO A   313E                                                     
REMARK 465     LYS A   313F                                                     
REMARK 465     SER A   313G                                                     
REMARK 465     ASN A   313H                                                     
REMARK 465     PRO A   313I                                                     
REMARK 465     GLU A   313J                                                     
REMARK 465     ASN A   313K                                                     
REMARK 465     LEU A   313L                                                     
REMARK 465     ASP A   313M                                                     
REMARK 465     LYS A   355A                                                     
REMARK 465     ARG A   355B                                                     
REMARK 465     GLY A   355C                                                     
REMARK 465     TYR A   355D                                                     
REMARK 465     PRO A   355E                                                     
REMARK 465     GLU A   355F                                                     
REMARK 465     SER A   522                                                      
REMARK 465     PRO A   523                                                      
REMARK 465     PRO A   524                                                      
REMARK 465     SER A   525                                                      
REMARK 465     ARG A   526                                                      
REMARK 465     MET A   527                                                      
REMARK 465     ALA A   528                                                      
REMARK 465     ALA A   529                                                      
REMARK 465     ALA A   530                                                      
REMARK 465     LEU A   531                                                      
REMARK 465     GLU A   532                                                      
REMARK 465     HIS A   533                                                      
REMARK 465     HIS A   534                                                      
REMARK 465     HIS A   535                                                      
REMARK 465     HIS A   536                                                      
REMARK 465     HIS A   537                                                      
REMARK 465     HIS A   538                                                      
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470     HIS A 313N   CG   ND1  CD2  CE1  NE2                             
REMARK 470     GLU A 411    CG   CD   OE1  OE2                                  
REMARK 470     SER A 412    OG                                                  
REMARK 470     ARG A 413    CG   CD   NE   CZ   NH1  NH2                        
REMARK 470     ILE A 416    CG1  CG2  CD1                                       
REMARK 470     ARG A 417    CG   CD   NE   CZ   NH1  NH2                        
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500    ARG A 365   NE  -  CZ  -  NH1 ANGL. DEV. =  -3.0 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    PRO A 272      153.36    -48.44                                   
REMARK 500    ASN A 272A       8.83     59.35                                   
REMARK 500    ARG A 417      145.53    172.59                                   
REMARK 500    ASN A 442       97.59    -22.74                                   
REMARK 500    ALA A 446       87.26   -153.68                                   
REMARK 500    ASP A 482     -121.77     41.06                                   
REMARK 500    LEU B  71     -145.81   -108.23                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: PLANAR GROUPS                                              
REMARK 500                                                                      
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL                 
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE                    
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN                    
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS                        
REMARK 500 AN RMSD GREATER THAN THIS VALUE                                      
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        RMS     TYPE                                    
REMARK 500    TYR A 284         0.07    SIDE CHAIN                              
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              ZN A 201  ZN                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 CYS A 334   SG                                                     
REMARK 620 2 CYS A 337   SG  108.9                                              
REMARK 620 3 CYS A 384   SG  108.9 108.4                                        
REMARK 620 4 CYS A 381   SG  108.6 104.8 116.9                                  
REMARK 620 N                    1     2     3                                   
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201                  
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 1NB8   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 1NBF   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 2AYN   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 2AYO   RELATED DB: PDB                                   
DBREF  2HD5 A  205   527  UNP    O75604   UBP2_HUMAN     258    605             
DBREF  2HD5 B    1    76  UNP    Q24K23   Q24K23_BOVIN     1     76             
SEQADV 2HD5 ALA A  528  UNP  O75604              CLONING ARTIFACT               
SEQADV 2HD5 ALA A  529  UNP  O75604              CLONING ARTIFACT               
SEQADV 2HD5 ALA A  530  UNP  O75604              CLONING ARTIFACT               
SEQADV 2HD5 LEU A  531  UNP  O75604              CLONING ARTIFACT               
SEQADV 2HD5 GLU A  532  UNP  O75604              CLONING ARTIFACT               
SEQADV 2HD5 HIS A  533  UNP  O75604              CLONING ARTIFACT               
SEQADV 2HD5 HIS A  534  UNP  O75604              CLONING ARTIFACT               
SEQADV 2HD5 HIS A  535  UNP  O75604              CLONING ARTIFACT               
SEQADV 2HD5 HIS A  536  UNP  O75604              CLONING ARTIFACT               
SEQADV 2HD5 HIS A  537  UNP  O75604              CLONING ARTIFACT               
SEQADV 2HD5 HIS A  538  UNP  O75604              CLONING ARTIFACT               
SEQRES   1 A  359  MET ASN SER LYS SER ALA GLN GLY LEU ALA GLY LEU ARG          
SEQRES   2 A  359  ASN LEU GLY ASN THR CYS PHE MET ASN SER ILE LEU GLN          
SEQRES   3 A  359  CYS LEU SER ASN THR ARG GLU LEU ARG ASP TYR CYS LEU          
SEQRES   4 A  359  GLN ARG LEU TYR MET ARG ASP LEU HIS HIS GLY SER ASN          
SEQRES   5 A  359  ALA HIS THR ALA LEU VAL GLU GLU PHE ALA LYS LEU ILE          
SEQRES   6 A  359  GLN THR ILE TRP THR SER SER PRO ASN ASP VAL VAL SER          
SEQRES   7 A  359  PRO SER GLU PHE LYS THR GLN ILE GLN ARG TYR ALA PRO          
SEQRES   8 A  359  ARG PHE VAL GLY TYR ASN GLN GLN ASP ALA GLN GLU PHE          
SEQRES   9 A  359  LEU ARG PHE LEU LEU ASP GLY LEU HIS ASN GLU VAL ASN          
SEQRES  10 A  359  ARG VAL THR LEU ARG PRO LYS SER ASN PRO GLU ASN LEU          
SEQRES  11 A  359  ASP HIS LEU PRO ASP ASP GLU LYS GLY ARG GLN MET TRP          
SEQRES  12 A  359  ARG LYS TYR LEU GLU ARG GLU ASP SER ARG ILE GLY ASP          
SEQRES  13 A  359  LEU PHE VAL GLY GLN LEU LYS SER SER LEU THR CYS THR          
SEQRES  14 A  359  ASP CYS GLY TYR CYS SER THR VAL PHE ASP PRO PHE TRP          
SEQRES  15 A  359  ASP LEU SER LEU PRO ILE ALA LYS ARG GLY TYR PRO GLU          
SEQRES  16 A  359  VAL THR LEU MET ASP CYS MET ARG LEU PHE THR LYS GLU          
SEQRES  17 A  359  ASP VAL LEU ASP GLY ASP GLU LYS PRO THR CYS CYS ARG          
SEQRES  18 A  359  CYS ARG GLY ARG LYS ARG CYS ILE LYS LYS PHE SER ILE          
SEQRES  19 A  359  GLN ARG PHE PRO LYS ILE LEU VAL LEU HIS LEU LYS ARG          
SEQRES  20 A  359  PHE SER GLU SER ARG ILE ARG THR SER LYS LEU THR THR          
SEQRES  21 A  359  PHE VAL ASN PHE PRO LEU ARG ASP LEU ASP LEU ARG GLU          
SEQRES  22 A  359  PHE ALA SER GLU ASN THR ASN HIS ALA VAL TYR ASN LEU          
SEQRES  23 A  359  TYR ALA VAL SER ASN HIS SER GLY THR THR MET GLY GLY          
SEQRES  24 A  359  HIS TYR THR ALA TYR CYS ARG SER PRO GLY THR GLY GLU          
SEQRES  25 A  359  TRP HIS THR PHE ASN ASP SER SER VAL THR PRO MET SER          
SEQRES  26 A  359  SER SER GLN VAL ARG THR SER ASP ALA TYR LEU LEU PHE          
SEQRES  27 A  359  TYR GLU LEU ALA SER PRO PRO SER ARG MET ALA ALA ALA          
SEQRES  28 A  359  LEU GLU HIS HIS HIS HIS HIS HIS                              
SEQRES   1 B   76  MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE          
SEQRES   2 B   76  THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL          
SEQRES   3 B   76  LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP          
SEQRES   4 B   76  GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP          
SEQRES   5 B   76  GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER          
SEQRES   6 B   76  THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY                  
HET     ZN  A 201       1                                                       
HETNAM      ZN ZINC ION                                                         
FORMUL   3   ZN    ZN 2+                                                        
FORMUL   4  HOH   *160(H2 O)                                                    
HELIX    1   1 THR A  222  ASN A  234  1                                  13    
HELIX    2   2 THR A  235  GLN A  244  1                                  10    
HELIX    3   3 ARG A  244A ASP A  245  1                                   6    
HELIX    4   4 THR A  254  THR A  269  1                                  16    
HELIX    5   5 PRO A  276  ALA A  285  1                                  12    
HELIX    6   6 PRO A  286  VAL A  289  5                                   4    
HELIX    7   7 ASP A  295  VAL A  311  1                                  17    
HELIX    8   8 PRO A  313P GLU A  314D 1                                  15    
HELIX    9   9 SER A  318  VAL A  325  1                                   8    
HELIX   10  10 THR A  359  THR A  368  1                                  10    
HELIX   11  11 ASP A  374  LYS A  378  5                                   5    
HELIX   12  12 ARG A  434  ALA A  437  5                                   4    
HELIX   13  13 SER A  489  VAL A  493  5                                   5    
HELIX   14  14 THR B   22  GLY B   35  1                                  14    
HELIX   15  15 THR B   55  ASN B   60  5                                   6    
SHEET    1   A 2 GLY A 215  LEU A 216  0                                        
SHEET    2   A 2 VAL A 273  VAL A 274  1  O  VAL A 274   N  GLY A 215           
SHEET    1   B 4 CYS A 340  PHE A 347  0                                        
SHEET    2   B 4 GLY A 326  CYS A 334 -1  N  LEU A 332   O  SER A 341           
SHEET    3   B 4 CYS A 389  ARG A 397 -1  O  SER A 394   N  LYS A 329           
SHEET    4   B 4 ASP A 371  LEU A 373 -1  N  LEU A 373   O  CYS A 389           
SHEET    1   C 5 LEU A 350  PRO A 353  0                                        
SHEET    2   C 5 ILE A 401  LYS A 407  1  O  HIS A 405   N  LEU A 350           
SHEET    3   C 5 ALA A 513  LEU A 520 -1  O  LEU A 516   N  LEU A 404           
SHEET    4   C 5 VAL A 447  GLY A 458 -1  N  ALA A 452   O  PHE A 517           
SHEET    5   C 5 LEU A 431  ASP A 432 -1  N  LEU A 431   O  TYR A 448           
SHEET    1   D 7 LEU A 350  PRO A 353  0                                        
SHEET    2   D 7 ILE A 401  LYS A 407  1  O  HIS A 405   N  LEU A 350           
SHEET    3   D 7 ALA A 513  LEU A 520 -1  O  LEU A 516   N  LEU A 404           
SHEET    4   D 7 VAL A 447  GLY A 458 -1  N  ALA A 452   O  PHE A 517           
SHEET    5   D 7 GLY A 463  ARG A 470 -1  O  ARG A 470   N  TYR A 451           
SHEET    6   D 7 TRP A 477  ASN A 481 -1  O  PHE A 480   N  ALA A 467           
SHEET    7   D 7 SER A 484  MET A 488 -1  O  THR A 486   N  THR A 479           
SHEET    1   E 2 THR A 380  CYS A 381  0                                        
SHEET    2   E 2 GLY A 385  ARG A 386 -1  O  GLY A 385   N  CYS A 381           
SHEET    1   F 5 THR B  12  GLU B  16  0                                        
SHEET    2   F 5 GLN B   2  LYS B   6 -1  N  ILE B   3   O  LEU B  15           
SHEET    3   F 5 THR B  66  VAL B  70  1  O  LEU B  67   N  PHE B   4           
SHEET    4   F 5 ARG B  42  PHE B  45 -1  N  ARG B  42   O  VAL B  70           
SHEET    5   F 5 LYS B  48  GLN B  49 -1  O  LYS B  48   N  PHE B  45           
LINK        ZN    ZN A 201                 SG  CYS A 334     1555   1555  2.46  
LINK        ZN    ZN A 201                 SG  CYS A 337     1555   1555  2.32  
LINK        ZN    ZN A 201                 SG  CYS A 384     1555   1555  2.40  
LINK        ZN    ZN A 201                 SG  CYS A 381     1555   1555  2.36  
SITE     1 AC1  4 CYS A 334  CYS A 337  CYS A 381  CYS A 384                    
CRYST1  106.903   45.534   76.360  90.00 110.01  90.00 C 1 2 1       4          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.009354  0.000000  0.003407        0.00000                         
SCALE2      0.000000  0.021962  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.013937        0.00000