PDB Short entry for 2JOA
HEADER    PROTEIN BINDING                         01-MAR-07   2JOA              
TITLE     HTRA1 BOUND TO AN OPTIMIZED PEPTIDE: NMR ASSIGNMENT OF PDZ DOMAIN AND 
TITLE    2 LIGAND RESONANCES                                                    
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: SERINE PROTEASE HTRA1;                                     
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: PDZ DOMAIN, RESIDUES 379-480;                              
COMPND   5 SYNONYM: L56, SERINE PROTEASE 11;                                    
COMPND   6 EC: 3.4.21.-;                                                        
COMPND   7 ENGINEERED: YES;                                                     
COMPND   8 MOL_ID: 2;                                                           
COMPND   9 MOLECULE: PEPTIDE H1-C1;                                             
COMPND  10 CHAIN: B;                                                            
COMPND  11 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: HTRA1, HTRA, PRSS11;                                           
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21;                            
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 511693;                                     
SOURCE   8 EXPRESSION_SYSTEM_STRAIN: BL21;                                      
SOURCE   9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR;                               
SOURCE  10 EXPRESSION_SYSTEM_VECTOR: PET15B;                                    
SOURCE  11 MOL_ID: 2;                                                           
SOURCE  12 SYNTHETIC: YES;                                                      
SOURCE  13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT;                            
SOURCE  14 ORGANISM_TAXID: 32630;                                               
SOURCE  15 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE PEPTIDE   
SOURCE  16 WAS DERIVED FROM A PHAGE-DISPLAYED LIBRARY AS AN OPTIMAL LIGAND FOR  
SOURCE  17 BINDING TO THE PDZ DOMAIN OF HUMAN HTRA1.                            
KEYWDS    PDZ, BETA-SANDWICH, CYCLICALLY-PERMUTED, PROTEIN BINDING              
EXPDTA    SOLUTION NMR                                                          
NUMMDL    20                                                                    
AUTHOR    S.T.RUNYON,Y.ZHANG,B.A.APPLETON,S.L.SAZINKSY,P.WU,B.PAN,C.WIESMANN,   
AUTHOR   2 N.J.SKELTON,S.S.SIDHU                                                
REVDAT   3   05-FEB-20 2JOA    1       SOURCE REMARK SEQADV                     
REVDAT   2   24-FEB-09 2JOA    1       VERSN                                    
REVDAT   1   20-NOV-07 2JOA    0                                                
JRNL        AUTH   S.T.RUNYON,Y.ZHANG,B.A.APPLETON,S.L.SAZINSKY,P.WU,B.PAN,     
JRNL        AUTH 2 C.WIESMANN,N.J.SKELTON,S.S.SIDHU                             
JRNL        TITL   STRUCTURAL AND FUNCTIONAL ANALYSIS OF THE PDZ DOMAINS OF     
JRNL        TITL 2 HUMAN HTRA1 AND HTRA3                                        
JRNL        REF    PROTEIN SCI.                  V.  16  2454 2007              
JRNL        REFN                   ISSN 0961-8368                               
JRNL        PMID   17962403                                                     
JRNL        DOI    10.1110/PS.073049407                                         
REMARK   1                                                                      
REMARK   1 REFERENCE 1                                                          
REMARK   1  AUTH   S.T.RUNYON,B.PAN,N.J.SKELTON                                 
REMARK   1  TITL   HTRA1 BOUND TO AN OPTIMIZED PEPTIDE: NMR ASSIGNMENT OF PDZ   
REMARK   1  TITL 2 DOMAIN AND LIGAND RESONANCES                                 
REMARK   1  REF    TO BE PUBLISHED                                              
REMARK   1  REFN                                                                
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : NMRPIPE 2005 FOR LINUX, CNX 2002                     
REMARK   3   AUTHORS     : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX    
REMARK   3                 (NMRPIPE), ACCELRYS SOFTWARE INC. (CNX)              
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: FOLLOWED BY CARTESIAN DYNAMICS AND        
REMARK   3  MINIMIZATION                                                        
REMARK   4                                                                      
REMARK   4 2JOA COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAR-07.                  
REMARK 100 THE DEPOSITION ID IS D_1000100082.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 298                                
REMARK 210  PH                             : 6.0                                
REMARK 210  IONIC STRENGTH                 : 0.025                              
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 2 MM [U-15N] HTRA1-PDZ, 4 MM       
REMARK 210                                   SYNTHETIC PEPTIDE H1-C1, 90% H2O/  
REMARK 210                                   10% D2O; 2 MM [U-13C; U-15N]       
REMARK 210                                   HTRA1-PDZ, 4 MM SYNTHETIC          
REMARK 210                                   PEPTIDE H1-C1, 90% H2O/10% D2O;    
REMARK 210                                   2 MM [U-13C; U-15N] HTRA1-PDZ, 4   
REMARK 210                                   MM SYNTHETIC PEPTIDE H1-C1, 100%   
REMARK 210                                   D2O; 2 MM [U-10% 13C; U-99% 15N]   
REMARK 210                                   HTRA1-PDZ, 4 MM SYNTHETIC          
REMARK 210                                   PEPTIDE H1-C1, 100% D2O; 2 MM [U-  
REMARK 210                                   13C; U-15N] HTRA1-PDZ, 1.8 MM      
REMARK 210                                   SYNTHETIC PEPTIDE H1-C1, 90% H2O/  
REMARK 210                                   10% D2O; 2 MM [U-13C; U-15N]       
REMARK 210                                   HTRA1-PDZ, 1.8 MM SYNTHETIC        
REMARK 210                                   PEPTIDE H1-C1, 100% D2O            
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 2D 1H-15N HSQC; 3D HNCA; 3D        
REMARK 210                                   HNCO; 3D HNCACB; 3D CBCA(CO)NH;    
REMARK 210                                   3D HN(CO)CA; 2D 1H-13C HSQC; 3D    
REMARK 210                                   1H-15N NOESY; 3D 1H-13C NOESY;     
REMARK 210                                   3D HCCH-TOCSY; 2D 1H-1H NOESY      
REMARK 210                                   13C,15N-FILTERED IN F1; 2D 1H-1H   
REMARK 210                                   TOCSY,13C,15N-FILTERED IN F1; 3D   
REMARK 210                                   1H-13C NOESY, 13C-FILTERED IN F1   
REMARK 210  SPECTROMETER FIELD STRENGTH    : 600 MHZ; 800 MHZ                   
REMARK 210  SPECTROMETER MODEL             : DRX                                
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : SPARKY 3.11, MONTE 2.02, CYANA     
REMARK 210                                   2.0, TOPSPIN 1.3, TALOS, CNX 2002  
REMARK 210   METHOD USED                   : TORSION ANGLE DYNAMICS             
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 100                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 20                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : STRUCTURES WITH THE LEAST          
REMARK 210                                   RESTRAINT VIOLATIONS               
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 SER A 377      -66.36   -152.14                                   
REMARK 500  1 LYS A 380       93.15     61.35                                   
REMARK 500  1 LEU A 390       89.49    -58.06                                   
REMARK 500  1 ARG A 401      -70.09    -82.51                                   
REMARK 500  1 ASP A 404       14.23   -142.80                                   
REMARK 500  1 PRO A 406      179.95    -52.09                                   
REMARK 500  1 ILE A 415      -68.68    -96.24                                   
REMARK 500  1 GLU A 430       41.45    -94.48                                   
REMARK 500  1 ASN A 431       28.54   -151.88                                   
REMARK 500  1 ILE A 435      -46.64   -148.79                                   
REMARK 500  1 VAL A 443      -42.81   -130.12                                   
REMARK 500  1 PRO A 475      175.49    -58.06                                   
REMARK 500  1 SER B   2      -74.54    -81.64                                   
REMARK 500  1 ARG B   3       71.34     60.40                                   
REMARK 500  2 HIS A 378       92.35   -171.96                                   
REMARK 500  2 LEU A 390       84.05    -69.13                                   
REMARK 500  2 ASP A 407       30.98    -98.31                                   
REMARK 500  2 PRO A 419        6.87    -69.52                                   
REMARK 500  2 LYS A 429      141.98    176.82                                   
REMARK 500  2 ILE A 435      -49.47   -141.86                                   
REMARK 500  2 ARG B   3       99.63    -65.50                                   
REMARK 500  3 ILE A 383      -59.46   -135.38                                   
REMARK 500  3 LEU A 390       95.98     47.26                                   
REMARK 500  3 ASP A 404       28.41   -167.54                                   
REMARK 500  3 PRO A 419       44.08    -83.93                                   
REMARK 500  3 ASP A 420       35.16   -173.31                                   
REMARK 500  3 ILE A 435      -46.18   -136.43                                   
REMARK 500  3 VAL A 443      -48.31   -139.45                                   
REMARK 500  3 PRO A 475     -172.71    -66.84                                   
REMARK 500  3 TRP B   6       85.93    -68.24                                   
REMARK 500  4 MET A 379       97.05     59.39                                   
REMARK 500  4 LEU A 390       81.41    -63.93                                   
REMARK 500  4 PRO A 406     -167.29    -59.27                                   
REMARK 500  4 ILE A 415      -61.24    -91.84                                   
REMARK 500  4 ASP A 420       40.87    178.25                                   
REMARK 500  4 ASN A 431       31.54   -165.17                                   
REMARK 500  4 ILE A 435      -46.94   -138.69                                   
REMARK 500  4 VAL A 443      -45.44   -133.76                                   
REMARK 500  4 ASN A 466       20.56   -140.19                                   
REMARK 500  5 HIS A 378      -76.29     66.42                                   
REMARK 500  5 LEU A 390       98.55    -54.37                                   
REMARK 500  5 ASP A 404       19.75   -146.97                                   
REMARK 500  5 PRO A 406     -172.74    -65.92                                   
REMARK 500  5 LEU A 428     -168.15   -108.12                                   
REMARK 500  5 GLU A 430       49.93    -89.92                                   
REMARK 500  5 ASN A 431       29.02   -160.46                                   
REMARK 500  5 ILE A 435      -47.56   -141.95                                   
REMARK 500  5 ASN A 466       30.89   -140.26                                   
REMARK 500  5 SER B   2       47.20    -97.72                                   
REMARK 500  5 ARG B   3       89.05    -61.62                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS     204 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 15154   RELATED DB: BMRB                                 
REMARK 900 RELATED ID: 2P3W   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF THE HTRA3 PDZ DOMAIN BOUND TO A PHAGE-DERIVED   
REMARK 900 LIGAND (FGRWV)                                                       
DBREF  2JOA A  380   480  UNP    Q92743   HTRA1_HUMAN    380    480             
DBREF  2JOA B    1     7  PDB    2JOA     2JOA             1      7             
SEQADV 2JOA GLY A  376  UNP  Q92743              EXPRESSION TAG                 
SEQADV 2JOA SER A  377  UNP  Q92743              EXPRESSION TAG                 
SEQADV 2JOA HIS A  378  UNP  Q92743              EXPRESSION TAG                 
SEQADV 2JOA MET A  379  UNP  Q92743              EXPRESSION TAG                 
SEQRES   1 A  105  GLY SER HIS MET LYS LYS TYR ILE GLY ILE ARG MET MET          
SEQRES   2 A  105  SER LEU THR SER SER LYS ALA LYS GLU LEU LYS ASP ARG          
SEQRES   3 A  105  HIS ARG ASP PHE PRO ASP VAL ILE SER GLY ALA TYR ILE          
SEQRES   4 A  105  ILE GLU VAL ILE PRO ASP THR PRO ALA GLU ALA GLY GLY          
SEQRES   5 A  105  LEU LYS GLU ASN ASP VAL ILE ILE SER ILE ASN GLY GLN          
SEQRES   6 A  105  SER VAL VAL SER ALA ASN ASP VAL SER ASP VAL ILE LYS          
SEQRES   7 A  105  ARG GLU SER THR LEU ASN MET VAL VAL ARG ARG GLY ASN          
SEQRES   8 A  105  GLU ASP ILE MET ILE THR VAL ILE PRO GLU GLU ILE ASP          
SEQRES   9 A  105  PRO                                                          
SEQRES   1 B    7  ASP SER ARG ILE TRP TRP VAL                                  
HELIX    1   1 THR A  391  HIS A  402  1                                  12    
HELIX    2   2 THR A  421  GLY A  427  1                                   7    
HELIX    3   3 SER A  444  GLU A  455  1                                  12    
SHEET    1   A 4 VAL A 433  ILE A 434  0                                        
SHEET    2   A 4 ALA A 412  VAL A 417 -1  N  ALA A 412   O  ILE A 434           
SHEET    3   A 4 ILE A 385  SER A 389 -1  N  ARG A 386   O  ILE A 415           
SHEET    4   A 4 ILE B   4  TRP B   6 -1  O  TRP B   5   N  MET A 387           
SHEET    1   B 2 LEU A 458  ARG A 464  0                                        
SHEET    2   B 2 GLU A 467  VAL A 473 -1  O  ILE A 471   N  MET A 460           
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000