PDB Short entry for 2KHN HEADER SIGNALING PROTEIN 09-APR-09 2KHN TITLE NMR SOLUTION STRUCTURE OF THE EH 1 DOMAIN FROM HUMAN INTERSECTIN-1 TITLE 2 PROTEIN. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET HR3646E. COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERSECTIN-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-111; COMPND 5 SYNONYM: SH3 DOMAIN-CONTAINING PROTEIN 1A, SH3P17; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ITSN1, ITSN, SH3D1A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET14-15C KEYWDS GFT NMR, HIGH THROUGHPUT, NESGC, HUMAN INTERSECTIN-1, ALTERNATIVE KEYWDS 2 SPLICING, CALCIUM, CELL JUNCTION, CELL PROJECTION, COILED COIL, KEYWDS 3 ENDOCYTOSIS, MEMBRANE, PHOSPHOPROTEIN, SH3 DOMAIN, SYNAPSE, KEYWDS 4 SYNAPTOSOME, SIGNALING PROTEIN, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 5 STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.L.MILLS,A.GHOSH,E.GARCIA,Q.ZHANG,R.SHASTRY,E.L.FOOTE,H.JANJUA, AUTHOR 2 T.B.ACTON,R.XIAO,J.K.EVERETT,G.T.MONTELIONE,T.SZYPERSKI,NORTHEAST AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 2 26-FEB-20 2KHN 1 REMARK SEQADV REVDAT 1 21-APR-09 2KHN 0 JRNL AUTH J.L.MILLS,A.GHOSH,E.GARCIA,Q.ZHANG,R.SHASTRY,E.L.FOOTE, JRNL AUTH 2 H.JANJUA,T.B.ACTON,R.XIAO,J.K.EVERETT,G.T.MONTELIONE, JRNL AUTH 3 T.SZYPERSKI JRNL TITL NMR SOLUTION STRUCTURE OF THE EH 1 DOMAIN FROM HUMAN JRNL TITL 2 INTERSECTIN-1 PROTEIN. NORTHEAST STRUCTURAL GENOMICS JRNL TITL 3 CONSORTIUM TARGET HR3646E. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMRJ, CNS REMARK 3 AUTHORS : VARIAN (VNMRJ), BRUNGER, ADAMS, CLORE, GROS, REMARK 3 NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KHN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000101132. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 430 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.87 MM [U-98% 13C; U-98% 15N] REMARK 210 HR3646E-1, 20 MM MES-2, 200 MM REMARK 210 SODIUM CHLORIDE-3, 5 MM CALCIUM REMARK 210 CHLORIDE-4, 10 MM DTT-5, 0.02 % REMARK 210 SODIUM AZIDE-6, 90% H2O/10% D2O; REMARK 210 0.81 MM [U-5% 13C; U-98% 15N] REMARK 210 HR3646E-7, 20 MM MES-8, 200 MM REMARK 210 SODIUM CHLORIDE-9, 5 MM CALCIUM REMARK 210 CHLORIDE-10, 10 MM DTT-11, 0.02 % REMARK 210 SODIUM AZIDE-12, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D SIM. 15N,13C NOESY; 3D HNCO; REMARK 210 GFT (4,3)D HNCABCA; GFT (4,3)D REMARK 210 CABCA(CO)NH; GFT (4,3)D AROM. REMARK 210 HCCH; GFT (4,3)D ALIPH. HCCH; REMARK 210 GFT (4,3)D HABCAB(CO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRDRAW, SPSCAN, XEASY, REMARK 210 AUTOASSIGN, TALOS, CYANA, CNS, REMARK 210 MOLMOL, PSVS REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 3 156.48 67.06 REMARK 500 1 ALA A 12 -75.60 -80.80 REMARK 500 1 SER A 46 51.19 -141.27 REMARK 500 1 ILE A 49 -164.66 -115.55 REMARK 500 1 ALA A 75 -71.54 -67.85 REMARK 500 1 ASN A 79 71.67 50.44 REMARK 500 1 MET A 83 93.01 60.73 REMARK 500 1 GLN A 114 -34.91 74.05 REMARK 500 1 ALA A 118 34.76 -91.80 REMARK 500 1 SER A 120 -49.26 -144.85 REMARK 500 2 HIS A 7 114.36 -175.45 REMARK 500 2 ALA A 12 16.10 -149.18 REMARK 500 2 ASP A 23 31.76 -88.82 REMARK 500 2 LYS A 43 65.70 60.88 REMARK 500 2 ILE A 45 -77.72 -90.82 REMARK 500 2 ALA A 75 -71.53 -64.55 REMARK 500 2 ASN A 79 77.42 55.07 REMARK 500 2 ARG A 82 -42.16 -165.45 REMARK 500 2 MET A 83 177.39 58.65 REMARK 500 2 GLN A 103 -51.22 -136.40 REMARK 500 2 LEU A 104 165.37 65.75 REMARK 500 2 GLN A 114 -169.19 62.81 REMARK 500 2 ILE A 119 85.82 61.04 REMARK 500 3 HIS A 6 97.74 -164.34 REMARK 500 3 GLN A 13 -163.31 60.81 REMARK 500 3 THR A 16 -52.10 -125.08 REMARK 500 3 LYS A 43 72.51 65.64 REMARK 500 3 ASN A 79 76.17 49.17 REMARK 500 3 MET A 83 74.91 43.14 REMARK 500 3 GLN A 114 -176.35 64.60 REMARK 500 4 HIS A 8 73.56 59.13 REMARK 500 4 LYS A 43 74.43 65.42 REMARK 500 4 ASN A 79 75.56 49.47 REMARK 500 4 MET A 83 115.20 70.43 REMARK 500 4 GLN A 103 -34.15 -137.63 REMARK 500 4 LEU A 104 156.08 66.34 REMARK 500 4 GLN A 114 153.99 64.07 REMARK 500 4 GLN A 115 100.33 -172.27 REMARK 500 4 PRO A 116 -158.93 -80.94 REMARK 500 4 ALA A 118 84.87 -161.20 REMARK 500 5 HIS A 5 -33.37 74.65 REMARK 500 5 MET A 11 -92.09 -158.19 REMARK 500 5 ALA A 12 -176.74 61.30 REMARK 500 5 GLN A 13 77.30 59.10 REMARK 500 5 LYS A 43 62.40 64.04 REMARK 500 5 SER A 46 -60.33 -152.77 REMARK 500 5 ASN A 79 70.56 52.70 REMARK 500 5 MET A 83 173.01 64.09 REMARK 500 5 GLN A 114 176.82 62.38 REMARK 500 5 ALA A 118 32.24 -169.64 REMARK 500 REMARK 500 THIS ENTRY HAS 189 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16250 RELATED DB: BMRB REMARK 900 RELATED ID: HR3646E RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS STATE THAT THE SEQUENCE DIFFERENCE AT POSITION 14 REMARK 999 IS DUE TO STRAIN VARIATION. DBREF 2KHN A 11 121 UNP Q15811 ITSN1_HUMAN 1 111 SEQADV 2KHN MET A 1 UNP Q15811 EXPRESSION TAG SEQADV 2KHN GLY A 2 UNP Q15811 EXPRESSION TAG SEQADV 2KHN HIS A 3 UNP Q15811 EXPRESSION TAG SEQADV 2KHN HIS A 4 UNP Q15811 EXPRESSION TAG SEQADV 2KHN HIS A 5 UNP Q15811 EXPRESSION TAG SEQADV 2KHN HIS A 6 UNP Q15811 EXPRESSION TAG SEQADV 2KHN HIS A 7 UNP Q15811 EXPRESSION TAG SEQADV 2KHN HIS A 8 UNP Q15811 EXPRESSION TAG SEQADV 2KHN SER A 9 UNP Q15811 EXPRESSION TAG SEQADV 2KHN HIS A 10 UNP Q15811 EXPRESSION TAG SEQADV 2KHN THR A 24 UNP Q15811 ILE 14 SEE REMARK 999 SEQRES 1 A 121 MET GLY HIS HIS HIS HIS HIS HIS SER HIS MET ALA GLN SEQRES 2 A 121 PHE PRO THR PRO PHE GLY GLY SER LEU ASP THR TRP ALA SEQRES 3 A 121 ILE THR VAL GLU GLU ARG ALA LYS HIS ASP GLN GLN PHE SEQRES 4 A 121 HIS SER LEU LYS PRO ILE SER GLY PHE ILE THR GLY ASP SEQRES 5 A 121 GLN ALA ARG ASN PHE PHE PHE GLN SER GLY LEU PRO GLN SEQRES 6 A 121 PRO VAL LEU ALA GLN ILE TRP ALA LEU ALA ASP MET ASN SEQRES 7 A 121 ASN ASP GLY ARG MET ASP GLN VAL GLU PHE SER ILE ALA SEQRES 8 A 121 MET LYS LEU ILE LYS LEU LYS LEU GLN GLY TYR GLN LEU SEQRES 9 A 121 PRO SER ALA LEU PRO PRO VAL MET LYS GLN GLN PRO VAL SEQRES 10 A 121 ALA ILE SER SER HELIX 1 1 THR A 28 LEU A 42 1 15 HELIX 2 2 THR A 50 SER A 61 1 12 HELIX 3 3 PRO A 64 ASP A 76 1 13 HELIX 4 4 ASP A 84 LEU A 99 1 16 HELIX 5 5 PRO A 109 GLN A 114 1 6 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000