PDB Short entry for 2LK2 HEADER TRANSCRIPTION 30-SEP-11 2LK2 TITLE SOLUTION NMR STRUCTURE OF HOMEOBOX DOMAIN (171-248) OF HUMAN HOMEOBOX TITLE 2 PROTEIN TGIF1, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET TITLE 3 HR4411B COMPND MOL_ID: 1; COMPND 2 MOLECULE: HOMEOBOX PROTEIN TGIF1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HOMEOBOX TALE-TYPE DNA BINDING DOMAIN RESIDUES 171-248; COMPND 5 SYNONYM: 5'-TG-3'-INTERACTING FACTOR 1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TGIF1, TGIF; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET15_NESG KEYWDS NESG, STRUCTURAL GENOMICS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 2 PSI-BIOLOGY, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.YANG,T.A.RAMELOT,J.R.CORT,R.SHASTRY,C.CICCOSANTI,K.HAMILTON, AUTHOR 2 T.B.ACTON,R.XIAO,J.K.EVERETT,G.T.MONTELIONE,M.A.KENNEDY,NORTHEAST AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 2 14-JUN-23 2LK2 1 REMARK SEQADV REVDAT 1 26-OCT-11 2LK2 0 JRNL AUTH Y.YANG,T.A.RAMELOT,J.R.CORT,R.SHASTRY,C.CICCOSANTI, JRNL AUTH 2 K.HAMILTON,T.B.ACTON,R.XIAO,J.K.EVERETT,G.T.MONTELIONE, JRNL AUTH 3 M.A.KENNEDY JRNL TITL SOLUTION NMR STRUCTURE OF HOMEOBOX DOMAIN (171-248) OF HUMAN JRNL TITL 2 HOMEOBOX PROTEIN TGIF1, NORTHEAST STRUCTURAL GENOMICS JRNL TITL 3 CONSORTIUM TARGET HR4411B. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 2008, CNS 1.2, PSVS 1.4, X REMARK 3 -PLOR_NIH_WITH_HBDB REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS), BHATTACHARYA AND MONTELIONE (PSVS), REMARK 3 SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR_ REMARK 3 NIH_WITH_HBDB) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LK2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1000102477. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 4.5 REMARK 210 IONIC STRENGTH : 0.2 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.41 MM [U-100% 13C; U-100% 15N] REMARK 210 HOMEOBOX DOMAIN (171-248) OF REMARK 210 HUMAN HOMEOBOX PROTEIN TGIF1, 20 REMARK 210 MM AMMONIUM ACETATE, 100 MM REMARK 210 SODIUM CHLORIDE, 0.02 % SODIUM REMARK 210 AZIDE, 10 MM DTT, 5 MM CALCIUM REMARK 210 CHLORIDE, 90% H2O/10% D2O; 0.36 REMARK 210 MM [U-5% 13C; U-100% 15N] REMARK 210 HOMEOBOX DOMAIN (171-248) OF REMARK 210 HUMAN HOMEOBOX PROTEIN TGIF1, 20 REMARK 210 MM AMMONIUM ACETATE, 100 MM REMARK 210 SODIUM CHLORIDE, 10 MM DTT, 0.02 REMARK 210 % SODIUM AZIDE, 5 MM CALCIUM REMARK 210 CHLORIDE, 90% H2O/10% D2O; 0.41 REMARK 210 MM [U-100% 13C; U-100% 15N] REMARK 210 HOMEOBOX DOMAIN (171-248) OF REMARK 210 HUMAN HOMEOBOX PROTEIN TGIF1, 20 REMARK 210 MM AMMONIUM ACETATE, 100 MM REMARK 210 SODIUM CHLORIDE, 0.02 % SODIUM REMARK 210 AZIDE, 10 MM DTT, 5 MM CALCIUM REMARK 210 CHLORIDE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 2D 1H-13C HSQC-CT; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY_ REMARK 210 ALIPH; 3D HNCO; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HN(CO)CA; 3D REMARK 210 HBHA(CO)NH; 3D H(CCO)NH; 3D REMARK 210 C(CCO)NH; 3D HCCH-COSY; 3D HCCH- REMARK 210 TOCSY; 3D CCH-TOCSY; 4D CC-NOESY; REMARK 210 3D 1H-15N NOESY_NUS REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 850 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, TOPSPIN 2.1.4, ASDP REMARK 210 1.0, X-PLOR NIH 2.25, SPARKY REMARK 210 3.113, AUTOASSIGN 2.30, PDBSTAT REMARK 210 5.4, PINE SERVER 1.0, CYANA 3.0 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 150 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE22 GLN A 18 HH21 ARG A 21 1.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 27 57.83 -118.90 REMARK 500 1 TYR A 29 -72.09 -63.23 REMARK 500 1 ASN A 30 33.68 -71.78 REMARK 500 1 ASP A 71 -74.09 -82.59 REMARK 500 1 ASP A 74 67.29 -170.75 REMARK 500 1 GLN A 77 104.60 54.39 REMARK 500 1 PHE A 78 96.31 36.25 REMARK 500 1 SER A 81 -141.64 -61.80 REMARK 500 1 ARG A 82 49.94 -85.93 REMARK 500 1 ARG A 83 82.20 53.59 REMARK 500 2 HIS A 3 85.01 45.12 REMARK 500 2 HIS A 7 -69.84 59.61 REMARK 500 2 HIS A 10 -148.66 -61.31 REMARK 500 2 ASN A 30 47.21 -72.03 REMARK 500 2 ALA A 31 36.98 -72.08 REMARK 500 2 HIS A 46 36.61 -99.56 REMARK 500 2 ASP A 71 79.84 -157.68 REMARK 500 2 LYS A 73 93.20 -47.26 REMARK 500 2 ASP A 74 76.91 -158.89 REMARK 500 2 ASN A 76 -48.66 -164.13 REMARK 500 2 PHE A 78 105.28 -58.47 REMARK 500 2 ILE A 80 28.24 33.80 REMARK 500 2 SER A 81 -71.06 -92.99 REMARK 500 2 SER A 88 176.56 50.62 REMARK 500 3 HIS A 6 -157.52 39.81 REMARK 500 3 HIS A 7 89.62 42.69 REMARK 500 3 SER A 9 -166.38 41.26 REMARK 500 3 HIS A 10 22.10 -150.19 REMARK 500 3 MET A 11 -96.57 42.09 REMARK 500 3 PRO A 13 150.60 -40.86 REMARK 500 3 TYR A 29 -97.38 -76.39 REMARK 500 3 ALA A 31 83.55 -156.62 REMARK 500 3 THR A 45 -164.44 -106.82 REMARK 500 3 GLN A 77 -49.11 -151.59 REMARK 500 4 HIS A 5 -60.48 -170.64 REMARK 500 4 HIS A 8 -148.63 -78.05 REMARK 500 4 MET A 11 -75.54 -83.82 REMARK 500 4 PRO A 13 162.45 -44.05 REMARK 500 4 TYR A 29 -77.18 -75.70 REMARK 500 4 ALA A 31 -107.10 -92.40 REMARK 500 4 ASP A 71 -39.22 -136.18 REMARK 500 4 PRO A 75 -76.88 -79.27 REMARK 500 4 THR A 79 -96.25 -43.38 REMARK 500 4 SER A 81 81.03 48.94 REMARK 500 4 ALA A 85 4.11 55.38 REMARK 500 4 SER A 88 135.92 75.58 REMARK 500 5 MET A 11 -118.24 -151.92 REMARK 500 5 ASN A 30 42.46 -91.01 REMARK 500 5 HIS A 46 31.70 -99.54 REMARK 500 5 ASP A 74 151.71 61.35 REMARK 500 REMARK 500 THIS ENTRY HAS 239 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17971 RELATED DB: BMRB REMARK 900 RELATED ID: HR4411B RELATED DB: TARGETDB DBREF 2LK2 A 12 89 UNP Q15583 TGIF1_HUMAN 171 248 SEQADV 2LK2 MET A 1 UNP Q15583 EXPRESSION TAG SEQADV 2LK2 GLY A 2 UNP Q15583 EXPRESSION TAG SEQADV 2LK2 HIS A 3 UNP Q15583 EXPRESSION TAG SEQADV 2LK2 HIS A 4 UNP Q15583 EXPRESSION TAG SEQADV 2LK2 HIS A 5 UNP Q15583 EXPRESSION TAG SEQADV 2LK2 HIS A 6 UNP Q15583 EXPRESSION TAG SEQADV 2LK2 HIS A 7 UNP Q15583 EXPRESSION TAG SEQADV 2LK2 HIS A 8 UNP Q15583 EXPRESSION TAG SEQADV 2LK2 SER A 9 UNP Q15583 EXPRESSION TAG SEQADV 2LK2 HIS A 10 UNP Q15583 EXPRESSION TAG SEQADV 2LK2 MET A 11 UNP Q15583 EXPRESSION TAG SEQRES 1 A 89 MET GLY HIS HIS HIS HIS HIS HIS SER HIS MET LEU PRO SEQRES 2 A 89 LYS GLU SER VAL GLN ILE LEU ARG ASP TRP LEU TYR GLU SEQRES 3 A 89 HIS ARG TYR ASN ALA TYR PRO SER GLU GLN GLU LYS ALA SEQRES 4 A 89 LEU LEU SER GLN GLN THR HIS LEU SER THR LEU GLN VAL SEQRES 5 A 89 CYS ASN TRP PHE ILE ASN ALA ARG ARG ARG LEU LEU PRO SEQRES 6 A 89 ASP MET LEU ARG LYS ASP GLY LYS ASP PRO ASN GLN PHE SEQRES 7 A 89 THR ILE SER ARG ARG GLY ALA LYS ILE SER GLU HELIX 1 1 PRO A 13 HIS A 27 1 15 HELIX 2 2 ARG A 28 TYR A 32 5 5 HELIX 3 3 SER A 34 THR A 45 1 12 HELIX 4 4 SER A 48 GLY A 72 1 25 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000