PDB Short entry for 2M7Q HEADER METAL BINDING PROTEIN 29-APR-13 2M7Q TITLE SOLUTION STRUCTURE OF TAX1BP1 UBZ1+2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TAX1-BINDING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 725-789; COMPND 5 SYNONYM: TRAF6-BINDING PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TAX1BP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS ZINC FINGER DOMAIN, UBZ DOMAIN, UBD, TAX1BP1, METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.A.CEREGIDO,M.SPINOLA AMILIBIA,L.BUTS,J.BRAVO,N.A.J.VAN NULAND REVDAT 3 14-JUN-23 2M7Q 1 REMARK REVDAT 2 24-AUG-22 2M7Q 1 JRNL REMARK SEQADV LINK REVDAT 1 04-DEC-13 2M7Q 0 JRNL AUTH M.A.CEREGIDO,M.SPINOLA AMILIBIA,L.BUTS,J.RIVERA-TORRES, JRNL AUTH 2 A.GARCIA-PINO,J.BRAVO,N.A.VAN NULAND JRNL TITL THE STRUCTURE OF TAX1BP1 UBZ1+2 PROVIDES INSIGHT INTO TARGET JRNL TITL 2 SPECIFICITY AND ADAPTABILITY. JRNL REF J.MOL.BIOL. V. 426 674 2014 JRNL REFN ESSN 1089-8638 JRNL PMID 24239949 JRNL DOI 10.1016/J.JMB.2013.11.006 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, CNS REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2M7Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000103314. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5-1.0 MM [U-98% 13C; U-98% REMARK 210 15N] UBZ1+2-1, 93% H2O/7% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D HNCACB; 3D CBCA(CO) REMARK 210 NH; 3D HBHA(CO)NH; CCH-TOCSY; REMARK 210 (HB)CB(CGCD)HD; (HB)CB(CGCDCE)HE; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : VNS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 13 CYS A 10 CA - CB - SG ANGL. DEV. = 8.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 2 -156.67 -87.98 REMARK 500 1 VAL A 65 74.24 54.09 REMARK 500 1 PHE A 68 -55.63 -154.64 REMARK 500 2 PRO A 2 25.14 -76.90 REMARK 500 2 ASP A 5 -169.39 -127.21 REMARK 500 2 VAL A 6 28.36 -157.62 REMARK 500 2 LEU A 66 -79.50 58.83 REMARK 500 2 ASN A 67 86.78 53.03 REMARK 500 3 GLU A 14 78.64 65.59 REMARK 500 3 VAL A 65 68.03 38.99 REMARK 500 3 PHE A 68 -65.86 -152.56 REMARK 500 4 MET A 4 103.62 66.31 REMARK 500 4 VAL A 6 29.12 -162.67 REMARK 500 4 HIS A 7 46.86 -93.96 REMARK 500 4 GLU A 14 75.84 62.07 REMARK 500 4 GLN A 63 22.45 -45.32 REMARK 500 4 ASN A 67 -40.26 177.43 REMARK 500 5 MET A 4 -79.87 70.13 REMARK 500 5 VAL A 6 29.47 -158.14 REMARK 500 6 ASP A 5 146.78 75.95 REMARK 500 6 VAL A 6 -23.91 170.38 REMARK 500 6 LEU A 12 -60.67 -95.83 REMARK 500 6 ASP A 62 -70.65 -91.67 REMARK 500 6 ASN A 64 -12.23 -159.21 REMARK 500 7 ASP A 5 154.18 169.74 REMARK 500 7 VAL A 6 26.06 -165.24 REMARK 500 7 LEU A 12 -64.48 -101.58 REMARK 500 7 PRO A 46 0.09 -68.05 REMARK 500 8 HIS A 3 -86.89 68.45 REMARK 500 8 VAL A 65 -44.51 62.14 REMARK 500 9 ASN A 67 -55.09 -176.79 REMARK 500 10 VAL A 6 46.84 -157.23 REMARK 500 10 VAL A 65 70.60 60.70 REMARK 500 11 HIS A 3 -87.84 -80.67 REMARK 500 11 MET A 4 29.98 46.52 REMARK 500 11 GLN A 63 12.40 -68.38 REMARK 500 12 HIS A 3 -67.44 -109.57 REMARK 500 12 MET A 4 97.75 60.66 REMARK 500 12 LYS A 8 77.62 -116.82 REMARK 500 12 ASN A 64 -25.03 76.77 REMARK 500 13 VAL A 6 21.40 -155.44 REMARK 500 13 LYS A 8 78.67 -113.39 REMARK 500 13 CYS A 10 104.33 -51.56 REMARK 500 13 GLU A 14 -10.74 65.19 REMARK 500 13 GLN A 63 4.43 59.28 REMARK 500 14 MET A 4 95.33 64.01 REMARK 500 14 CYS A 10 109.66 -56.51 REMARK 500 15 PRO A 2 86.21 -67.31 REMARK 500 15 HIS A 3 -52.59 -159.26 REMARK 500 15 VAL A 65 71.06 52.74 REMARK 500 REMARK 500 THIS ENTRY HAS 75 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 15 HIS A 60 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 10 SG REMARK 620 2 CYS A 13 SG 103.9 REMARK 620 3 HIS A 29 NE2 101.5 112.1 REMARK 620 4 HIS A 33 NE2 111.1 115.2 111.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 37 SG REMARK 620 2 CYS A 40 SG 108.6 REMARK 620 3 HIS A 56 NE2 108.5 110.2 REMARK 620 4 HIS A 60 NE2 112.9 105.5 111.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 102 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2I5O RELATED DB: PDB REMARK 900 RELATED ID: 19201 RELATED DB: BMRB DBREF 2M7Q A 5 69 UNP Q86VP1 TAXB1_HUMAN 725 789 SEQADV 2M7Q GLY A 1 UNP Q86VP1 EXPRESSION TAG SEQADV 2M7Q PRO A 2 UNP Q86VP1 EXPRESSION TAG SEQADV 2M7Q HIS A 3 UNP Q86VP1 EXPRESSION TAG SEQADV 2M7Q MET A 4 UNP Q86VP1 EXPRESSION TAG SEQRES 1 A 69 GLY PRO HIS MET ASP VAL HIS LYS LYS CYS PRO LEU CYS SEQRES 2 A 69 GLU LEU MET PHE PRO PRO ASN TYR ASP GLN SER LYS PHE SEQRES 3 A 69 GLU GLU HIS VAL GLU SER HIS TRP LYS VAL CYS PRO MET SEQRES 4 A 69 CYS SER GLU GLN PHE PRO PRO ASP TYR ASP GLN GLN VAL SEQRES 5 A 69 PHE GLU ARG HIS VAL GLN THR HIS PHE ASP GLN ASN VAL SEQRES 6 A 69 LEU ASN PHE ASP HET ZN A 101 1 HET ZN A 102 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) HELIX 1 1 ASP A 22 TRP A 34 1 13 HELIX 2 2 ASP A 49 GLN A 63 1 15 SHEET 1 A 2 LYS A 35 VAL A 36 0 SHEET 2 A 2 GLN A 43 PHE A 44 -1 O PHE A 44 N LYS A 35 LINK SG CYS A 10 ZN ZN A 101 1555 1555 2.28 LINK SG CYS A 13 ZN ZN A 101 1555 1555 2.30 LINK NE2 HIS A 29 ZN ZN A 101 1555 1555 2.00 LINK NE2 HIS A 33 ZN ZN A 101 1555 1555 2.00 LINK SG CYS A 37 ZN ZN A 102 1555 1555 2.32 LINK SG CYS A 40 ZN ZN A 102 1555 1555 2.27 LINK NE2 HIS A 56 ZN ZN A 102 1555 1555 1.99 LINK NE2 HIS A 60 ZN ZN A 102 1555 1555 1.97 SITE 1 AC1 4 CYS A 10 CYS A 13 HIS A 29 HIS A 33 SITE 1 AC2 4 CYS A 37 CYS A 40 HIS A 56 HIS A 60 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000