PDB Short entry for 2OVP HEADER TRANSCRIPTION/CELL CYCLE 14-FEB-07 2OVP TITLE STRUCTURE OF THE SKP1-FBW7 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: S-PHASE KINASE-ASSOCIATED PROTEIN 1A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-147; COMPND 5 SYNONYM: SKP1; CYCLIN A/CDK2-ASSOCIATED PROTEIN P19; P19A; P19SKP1; COMPND 6 RNA POLYMERASE II ELONGATION FACTOR-LIKE PROTEIN; ORGAN OF CORTI COMPND 7 PROTEIN 2; OCP-II PROTEIN; OCP-2; TRANSCRIPTION ELONGATION FACTOR B; COMPND 8 SIII; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: F-BOX/WD REPEAT PROTEIN 7; COMPND 12 CHAIN: B; COMPND 13 FRAGMENT: N-TERMINAL RESIDUES 263-707; COMPND 14 SYNONYM: FBW7; F-BOX AND WD-40 DOMAIN PROTEIN 7; F-BOX PROTEIN FBX30; COMPND 15 HCDC4; ARCHIPELAGO HOMOLOG; HAGO; SEL-10; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SKP1A, EMC19, OCP2, SKP1, TCEB1L; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: ENGINEERED PGEX VECTOR; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: FBXW7, FBW7, FBX30, SEL10; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: ENGINEERED PGEX VECTOR KEYWDS F-BOX; WD40 DOMAINS, TRANSCRIPTION-CELL CYCLE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.HAO,S.OEHLMANN,M.E.SOWA,J.W.HARPER,N.P.PAVLETICH REVDAT 4 03-APR-24 2OVP 1 REMARK REVDAT 3 21-FEB-24 2OVP 1 SEQADV REVDAT 2 24-FEB-09 2OVP 1 VERSN REVDAT 1 24-APR-07 2OVP 0 JRNL AUTH B.HAO,S.OEHLMANN,M.E.SOWA,J.W.HARPER,N.P.PAVLETICH JRNL TITL STRUCTURE OF A FBW7-SKP1-CYCLIN E COMPLEX: JRNL TITL 2 MULTISITE-PHOSPHORYLATED SUBSTRATE RECOGNITION BY SCF JRNL TITL 3 UBIQUITIN LIGASES JRNL REF MOL.CELL V. 26 131 2007 JRNL REFN ISSN 1097-2765 JRNL PMID 17434132 JRNL DOI 10.1016/J.MOLCEL.2007.02.022 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 190811.950 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 28352 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1959 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4271 REMARK 3 BIN R VALUE (WORKING SET) : 0.3040 REMARK 3 BIN FREE R VALUE : 0.3430 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 303 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4557 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 119 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 73.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.82000 REMARK 3 B22 (A**2) : 2.82000 REMARK 3 B33 (A**2) : -5.65000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.36 REMARK 3 ESD FROM SIGMAA (A) : 0.40 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.43 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.50 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.840 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.960 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.270 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.040 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.600 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.33 REMARK 3 BSOL : 10.00 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : LOCALTOPPA REMARK 3 PARAMETER FILE 4 : LOCALTOPPA REMARK 3 PARAMETER FILE 5 : ION.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2OVP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1000041643. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-04 REMARK 200 TEMPERATURE (KELVIN) : 123 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X9A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9623 REMARK 200 MONOCHROMATOR : YALE MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29166 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : 0.09300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.34400 REMARK 200 R SYM FOR SHELL (I) : 0.34400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: SKP1, B-TRCP1, AND CDC4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES-NA, 1.2 M LI2SO4, 7.5% REMARK 280 GLYCEROL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 111.35100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 111.35100 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.44150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 111.35100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 25.72075 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 111.35100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 77.16225 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 111.35100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 77.16225 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 111.35100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 25.72075 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 111.35100 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 111.35100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 51.44150 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 111.35100 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 111.35100 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 51.44150 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 111.35100 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 77.16225 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 111.35100 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 25.72075 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 111.35100 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 25.72075 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 111.35100 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 77.16225 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 111.35100 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 111.35100 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 51.44150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 23880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 86220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -118.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 445.40400 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 445.40400 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 102.88300 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 445.40400 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 445.40400 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 102.88300 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1001 REMARK 465 LYS A 1074 REMARK 465 ASP A 1075 REMARK 465 ASP A 1076 REMARK 465 PRO A 1077 REMARK 465 GLY A 1078 REMARK 465 GLY A 1079 REMARK 465 SER A 1080 REMARK 465 GLY A 1081 REMARK 465 THR A 1082 REMARK 465 ASP A 1083 REMARK 465 CYS A 1160 REMARK 465 GLU A 1161 REMARK 465 GLU A 1162 REMARK 465 LYS A 1163 REMARK 465 ARG B 2338 REMARK 465 ARG B 2339 REMARK 465 LYS B 2340 REMARK 465 LYS B 2707 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR B 2385 O VAL B 2424 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B2373 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A1003 148.84 -176.14 REMARK 500 GLU A1019 -54.83 78.55 REMARK 500 LYS A1022 7.09 -65.53 REMARK 500 ASP A1033 -61.61 -109.87 REMARK 500 LEU A1047 65.88 -119.00 REMARK 500 THR A1063 4.07 -60.99 REMARK 500 TRP A1088 -49.54 -175.93 REMARK 500 ASP A1111 71.08 54.59 REMARK 500 LYS A1128 93.28 -53.65 REMARK 500 LYS A1130 -166.32 55.39 REMARK 500 THR A1131 103.25 57.53 REMARK 500 LYS A1137 -14.64 -49.61 REMARK 500 ASN A1140 -89.73 68.65 REMARK 500 ILE A1141 113.66 49.71 REMARK 500 ASP A1144 30.59 -84.85 REMARK 500 GLU A1147 -72.60 -48.26 REMARK 500 GLU A1149 -71.31 -46.95 REMARK 500 GLN B2264 -48.76 73.73 REMARK 500 GLN B2270 0.26 -60.46 REMARK 500 PRO B2274 22.89 -74.60 REMARK 500 GLN B2275 163.75 -37.84 REMARK 500 PHE B2276 98.64 52.82 REMARK 500 ARG B2278 38.90 -89.77 REMARK 500 ALA B2315 -3.61 -53.67 REMARK 500 ASP B2331 -28.71 62.14 REMARK 500 ILE B2336 175.39 -57.13 REMARK 500 LYS B2343 -179.15 -45.97 REMARK 500 PRO B2344 88.83 12.78 REMARK 500 ARG B2366 -93.36 -40.65 REMARK 500 SER B2372 99.84 82.19 REMARK 500 LEU B2376 70.88 -117.01 REMARK 500 ASP B2380 139.65 -33.82 REMARK 500 ASP B2381 29.47 44.12 REMARK 500 ASN B2392 -23.97 65.30 REMARK 500 ASN B2401 2.73 59.65 REMARK 500 VAL B2409 -73.43 -72.34 REMARK 500 LEU B2417 77.34 -59.51 REMARK 500 ARG B2430 84.26 -160.60 REMARK 500 ASP B2431 109.44 35.00 REMARK 500 ASN B2432 -8.42 63.26 REMARK 500 ASP B2440 5.43 -62.36 REMARK 500 MET B2467 131.40 -177.18 REMARK 500 GLU B2471 -121.48 65.15 REMARK 500 TYR B2519 0.61 -58.48 REMARK 500 PHE B2521 -11.99 61.36 REMARK 500 GLU B2531 34.84 37.45 REMARK 500 CYS B2533 84.23 -68.73 REMARK 500 THR B2541 10.26 -64.10 REMARK 500 ASP B2550 30.25 -99.73 REMARK 500 THR B2561 -31.06 76.12 REMARK 500 REMARK 500 THIS ENTRY HAS 59 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2OVQ RELATED DB: PDB REMARK 900 RELATED ID: 2OVR RELATED DB: PDB DBREF 2OVP A 1001 1149 UNP P63208 SKP1_HUMAN 1 163 DBREF 2OVP B 2263 2707 UNP Q969H0 FBXW7_HUMAN 263 707 SEQADV 2OVP A UNP P63208 ASP 37 DELETION SEQADV 2OVP A UNP P63208 ASP 38 DELETION SEQADV 2OVP A UNP P63208 GLU 39 DELETION SEQADV 2OVP A UNP P63208 GLY 40 DELETION SEQADV 2OVP A UNP P63208 ASP 41 DELETION SEQADV 2OVP A UNP P63208 ASP 42 DELETION SEQADV 2OVP A UNP P63208 PRO 70 DELETION SEQADV 2OVP A UNP P63208 PRO 71 DELETION SEQADV 2OVP A UNP P63208 PRO 72 DELETION SEQADV 2OVP A UNP P63208 GLU 73 DELETION SEQADV 2OVP A UNP P63208 ASP 74 DELETION SEQADV 2OVP A UNP P63208 ASP 75 DELETION SEQADV 2OVP A UNP P63208 GLU 76 DELETION SEQADV 2OVP A UNP P63208 ASN 77 DELETION SEQADV 2OVP GLY A 1078 UNP P63208 LYS 78 LINKER SEQADV 2OVP GLY A 1079 UNP P63208 GLU 79 LINKER SEQADV 2OVP SER A 1080 UNP P63208 LYS 80 LINKER SEQADV 2OVP GLY A 1081 UNP P63208 ARG 81 LINKER SEQRES 1 A 149 MET PRO SER ILE LYS LEU GLN SER SER ASP GLY GLU ILE SEQRES 2 A 149 PHE GLU VAL ASP VAL GLU ILE ALA LYS GLN SER VAL THR SEQRES 3 A 149 ILE LYS THR MET LEU GLU ASP LEU GLY MET ASP PRO VAL SEQRES 4 A 149 PRO LEU PRO ASN VAL ASN ALA ALA ILE LEU LYS LYS VAL SEQRES 5 A 149 ILE GLN TRP CYS THR HIS HIS LYS ASP ASP PRO GLY GLY SEQRES 6 A 149 SER GLY THR ASP ASP ILE PRO VAL TRP ASP GLN GLU PHE SEQRES 7 A 149 LEU LYS VAL ASP GLN GLY THR LEU PHE GLU LEU ILE LEU SEQRES 8 A 149 ALA ALA ASN TYR LEU ASP ILE LYS GLY LEU LEU ASP VAL SEQRES 9 A 149 THR CYS LYS THR VAL ALA ASN MET ILE LYS GLY LYS THR SEQRES 10 A 149 PRO GLU GLU ILE ARG LYS THR PHE ASN ILE LYS ASN ASP SEQRES 11 A 149 PHE THR GLU GLU GLU GLU ALA GLN VAL ARG LYS GLU ASN SEQRES 12 A 149 GLN TRP CYS GLU GLU LYS SEQRES 1 B 445 THR GLN VAL LYS HIS MET MET GLN VAL ILE GLU PRO GLN SEQRES 2 B 445 PHE GLN ARG ASP PHE ILE SER LEU LEU PRO LYS GLU LEU SEQRES 3 B 445 ALA LEU TYR VAL LEU SER PHE LEU GLU PRO LYS ASP LEU SEQRES 4 B 445 LEU GLN ALA ALA GLN THR CYS ARG TYR TRP ARG ILE LEU SEQRES 5 B 445 ALA GLU ASP ASN LEU LEU TRP ARG GLU LYS CYS LYS GLU SEQRES 6 B 445 GLU GLY ILE ASP GLU PRO LEU HIS ILE LYS ARG ARG LYS SEQRES 7 B 445 VAL ILE LYS PRO GLY PHE ILE HIS SER PRO TRP LYS SER SEQRES 8 B 445 ALA TYR ILE ARG GLN HIS ARG ILE ASP THR ASN TRP ARG SEQRES 9 B 445 ARG GLY GLU LEU LYS SER PRO LYS VAL LEU LYS GLY HIS SEQRES 10 B 445 ASP ASP HIS VAL ILE THR CYS LEU GLN PHE CYS GLY ASN SEQRES 11 B 445 ARG ILE VAL SER GLY SER ASP ASP ASN THR LEU LYS VAL SEQRES 12 B 445 TRP SER ALA VAL THR GLY LYS CYS LEU ARG THR LEU VAL SEQRES 13 B 445 GLY HIS THR GLY GLY VAL TRP SER SER GLN MET ARG ASP SEQRES 14 B 445 ASN ILE ILE ILE SER GLY SER THR ASP ARG THR LEU LYS SEQRES 15 B 445 VAL TRP ASN ALA GLU THR GLY GLU CYS ILE HIS THR LEU SEQRES 16 B 445 TYR GLY HIS THR SER THR VAL ARG CYS MET HIS LEU HIS SEQRES 17 B 445 GLU LYS ARG VAL VAL SER GLY SER ARG ASP ALA THR LEU SEQRES 18 B 445 ARG VAL TRP ASP ILE GLU THR GLY GLN CYS LEU HIS VAL SEQRES 19 B 445 LEU MET GLY HIS VAL ALA ALA VAL ARG CYS VAL GLN TYR SEQRES 20 B 445 ASP GLY ARG ARG VAL VAL SER GLY ALA TYR ASP PHE MET SEQRES 21 B 445 VAL LYS VAL TRP ASP PRO GLU THR GLU THR CYS LEU HIS SEQRES 22 B 445 THR LEU GLN GLY HIS THR ASN ARG VAL TYR SER LEU GLN SEQRES 23 B 445 PHE ASP GLY ILE HIS VAL VAL SER GLY SER LEU ASP THR SEQRES 24 B 445 SER ILE ARG VAL TRP ASP VAL GLU THR GLY ASN CYS ILE SEQRES 25 B 445 HIS THR LEU THR GLY HIS GLN SER LEU THR SER GLY MET SEQRES 26 B 445 GLU LEU LYS ASP ASN ILE LEU VAL SER GLY ASN ALA ASP SEQRES 27 B 445 SER THR VAL LYS ILE TRP ASP ILE LYS THR GLY GLN CYS SEQRES 28 B 445 LEU GLN THR LEU GLN GLY PRO ASN LYS HIS GLN SER ALA SEQRES 29 B 445 VAL THR CYS LEU GLN PHE ASN LYS ASN PHE VAL ILE THR SEQRES 30 B 445 SER SER ASP ASP GLY THR VAL LYS LEU TRP ASP LEU LYS SEQRES 31 B 445 THR GLY GLU PHE ILE ARG ASN LEU VAL THR LEU GLU SER SEQRES 32 B 445 GLY GLY SER GLY GLY VAL VAL TRP ARG ILE ARG ALA SER SEQRES 33 B 445 ASN THR LYS LEU VAL CYS ALA VAL GLY SER ARG ASN GLY SEQRES 34 B 445 THR GLU GLU THR LYS LEU LEU VAL LEU ASP PHE ASP VAL SEQRES 35 B 445 ASP MET LYS FORMUL 3 HOH *119(H2 O) HELIX 1 1 SER A 1024 ASP A 1033 1 10 HELIX 2 2 ASN A 1051 THR A 1063 1 13 HELIX 3 3 TRP A 1088 LEU A 1093 1 6 HELIX 4 4 ASP A 1096 ASP A 1111 1 16 HELIX 5 5 ILE A 1112 LYS A 1128 1 17 HELIX 6 6 THR A 1131 ASN A 1140 1 10 HELIX 7 7 THR A 1146 ASN A 1157 1 12 HELIX 8 8 GLN B 2264 GLU B 2273 1 10 HELIX 9 9 ASP B 2279 LEU B 2284 1 6 HELIX 10 10 PRO B 2285 SER B 2294 1 10 HELIX 11 11 GLU B 2297 GLN B 2306 1 10 HELIX 12 12 CYS B 2308 GLU B 2316 1 9 HELIX 13 13 ASP B 2317 GLU B 2328 1 12 HELIX 14 14 SER B 2349 ARG B 2367 1 19 HELIX 15 15 PRO B 2528 GLU B 2531 5 4 SHEET 1 A 3 ILE A1013 VAL A1016 0 SHEET 2 A 3 ILE A1004 SER A1008 -1 N LEU A1006 O PHE A1014 SHEET 3 A 3 PRO A1044 LEU A1047 1 O LEU A1047 N GLN A1007 SHEET 1 B 4 LYS B2374 LYS B2377 0 SHEET 2 B 4 LYS B2696 ASP B2701 -1 O VAL B2699 N LYS B2374 SHEET 3 B 4 LYS B2681 GLY B2687 -1 N VAL B2686 O LYS B2696 SHEET 4 B 4 VAL B2671 ALA B2677 -1 N ARG B2674 O ALA B2685 SHEET 1 C 4 ILE B2384 CYS B2390 0 SHEET 2 C 4 ARG B2393 SER B2398 -1 O GLY B2397 N CYS B2386 SHEET 3 C 4 LEU B2403 SER B2407 -1 O TRP B2406 N ILE B2394 SHEET 4 C 4 CYS B2413 THR B2416 -1 O LEU B2414 N VAL B2405 SHEET 1 D 4 VAL B2424 MET B2429 0 SHEET 2 D 4 ILE B2433 SER B2438 -1 O GLY B2437 N SER B2426 SHEET 3 D 4 THR B2442 ASN B2447 -1 O TRP B2446 N ILE B2434 SHEET 4 D 4 CYS B2453 TYR B2458 -1 O LEU B2457 N LEU B2443 SHEET 1 E 4 CYS B2466 HIS B2470 0 SHEET 2 E 4 ARG B2473 GLY B2477 -1 O ARG B2473 N HIS B2470 SHEET 3 E 4 THR B2482 ASP B2487 -1 O TRP B2486 N VAL B2474 SHEET 4 E 4 HIS B2495 MET B2498 -1 O LEU B2497 N LEU B2483 SHEET 1 F 4 VAL B2504 TYR B2509 0 SHEET 2 F 4 VAL B2514 ALA B2518 -1 O VAL B2515 N GLN B2508 SHEET 3 F 4 VAL B2523 ASP B2527 -1 O TRP B2526 N VAL B2514 SHEET 4 F 4 THR B2532 LEU B2537 -1 O LEU B2537 N VAL B2523 SHEET 1 G 4 VAL B2544 PHE B2549 0 SHEET 2 G 4 HIS B2553 SER B2558 -1 O VAL B2555 N GLN B2548 SHEET 3 G 4 ILE B2563 ASP B2567 -1 O TRP B2566 N VAL B2554 SHEET 4 G 4 CYS B2573 LEU B2577 -1 O ILE B2574 N VAL B2565 SHEET 1 H 4 THR B2584 LYS B2590 0 SHEET 2 H 4 ILE B2593 ASN B2598 -1 O VAL B2595 N GLU B2588 SHEET 3 H 4 VAL B2603 ASP B2607 -1 O TRP B2606 N LEU B2594 SHEET 4 H 4 GLN B2612 LEU B2617 -1 O LEU B2617 N VAL B2603 SHEET 1 I 4 VAL B2627 PHE B2632 0 SHEET 2 I 4 PHE B2636 SER B2641 -1 O ILE B2638 N GLN B2631 SHEET 3 I 4 THR B2645 ASP B2650 -1 O LYS B2647 N THR B2639 SHEET 4 I 4 PHE B2656 THR B2662 -1 O ARG B2658 N LEU B2648 CRYST1 222.702 222.702 102.883 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004490 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004490 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009720 0.00000