PDB Short entry for 2R1Z HEADER ANTITUMOR PROTEIN 23-AUG-07 2R1Z TITLE CRYSTAL STRUCTURE OF THE BARD1 BRCT REPEAT COMPND MOL_ID: 1; COMPND 2 MOLECULE: BRCA1-ASSOCIATED RING DOMAIN PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BARD-1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BARD1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDEST15 KEYWDS BRCT REPEAT, ANK REPEAT, DISEASE MUTATION, METAL-BINDING, NUCLEUS, KEYWDS 2 ZINC-FINGER, ANTITUMOR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.S.LEE,R.A.EDWARDS,R.S.WILLIAMS,M.J.N.GLOVER REVDAT 5 21-FEB-24 2R1Z 1 REMARK REVDAT 4 25-OCT-17 2R1Z 1 REMARK REVDAT 3 13-JUL-11 2R1Z 1 VERSN REVDAT 2 24-FEB-09 2R1Z 1 VERSN REVDAT 1 04-SEP-07 2R1Z 0 JRNL AUTH M.S.LEE,R.A.EDWARDS,S.E.TSUTAKAWA,R.S.WILLIAMS,M.J.N.GLOVER JRNL TITL CRYSTAL STRUCTURE OF THE BARD1 BRCT REPEAT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 28782 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1445 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1429 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 69.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.2830 REMARK 3 BIN FREE R VALUE SET COUNT : 82 REMARK 3 BIN FREE R VALUE : 0.3520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3311 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 115 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.30000 REMARK 3 B22 (A**2) : -0.39000 REMARK 3 B33 (A**2) : -0.91000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.243 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.202 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.161 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.273 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3402 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4597 ; 1.207 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 407 ; 5.925 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 148 ;38.997 ;23.649 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 618 ;17.143 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;21.112 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 503 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2516 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1476 ; 0.197 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2264 ; 0.302 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 134 ; 0.137 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 50 ; 0.180 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.162 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2108 ; 0.573 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3325 ; 1.025 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1487 ; 1.324 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1272 ; 2.093 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 6 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 570 A 579 3 REMARK 3 1 B 570 B 579 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 40 ; 0.030 ; 0.050 REMARK 3 LOOSE POSITIONAL 1 A (A): 25 ; 0.210 ; 5.000 REMARK 3 TIGHT THERMAL 1 A (A**2): 40 ; 0.060 ; 0.500 REMARK 3 LOOSE THERMAL 1 A (A**2): 25 ; 0.440 ;10.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 596 A 639 3 REMARK 3 1 B 596 B 639 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 2 A (A): 176 ; 0.050 ; 0.050 REMARK 3 LOOSE POSITIONAL 2 A (A): 167 ; 0.380 ; 5.000 REMARK 3 TIGHT THERMAL 2 A (A**2): 176 ; 0.080 ; 0.500 REMARK 3 LOOSE THERMAL 2 A (A**2): 167 ; 0.760 ;10.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 644 A 664 3 REMARK 3 1 B 644 B 664 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 3 A (A): 84 ; 0.050 ; 0.050 REMARK 3 LOOSE POSITIONAL 3 A (A): 96 ; 1.010 ; 5.000 REMARK 3 TIGHT THERMAL 3 A (A**2): 84 ; 0.080 ; 0.500 REMARK 3 LOOSE THERMAL 3 A (A**2): 96 ; 1.180 ;10.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 4 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 670 A 679 3 REMARK 3 1 B 670 B 679 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 4 A (A): 40 ; 0.030 ; 0.050 REMARK 3 LOOSE POSITIONAL 4 A (A): 49 ; 0.190 ; 5.000 REMARK 3 TIGHT THERMAL 4 A (A**2): 40 ; 0.100 ; 0.500 REMARK 3 LOOSE THERMAL 4 A (A**2): 49 ; 1.020 ;10.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 5 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 687 A 706 3 REMARK 3 1 B 687 B 706 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 5 A (A): 80 ; 0.040 ; 0.050 REMARK 3 LOOSE POSITIONAL 5 A (A): 67 ; 0.540 ; 5.000 REMARK 3 TIGHT THERMAL 5 A (A**2): 80 ; 0.090 ; 0.500 REMARK 3 LOOSE THERMAL 5 A (A**2): 67 ; 1.410 ;10.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 6 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 755 A 775 3 REMARK 3 1 B 755 B 775 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 6 A (A): 84 ; 0.050 ; 0.050 REMARK 3 LOOSE POSITIONAL 6 A (A): 89 ; 0.340 ; 5.000 REMARK 3 TIGHT THERMAL 6 A (A**2): 84 ; 0.100 ; 0.500 REMARK 3 LOOSE THERMAL 6 A (A**2): 89 ; 0.800 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 569 A 668 REMARK 3 ORIGIN FOR THE GROUP (A): 17.9050 10.1410 37.8090 REMARK 3 T TENSOR REMARK 3 T11: -0.1711 T22: 0.0551 REMARK 3 T33: -0.0477 T12: 0.0214 REMARK 3 T13: -0.0547 T23: -0.3092 REMARK 3 L TENSOR REMARK 3 L11: 5.4129 L22: 7.0526 REMARK 3 L33: 11.3504 L12: -1.3884 REMARK 3 L13: -3.7925 L23: 4.1660 REMARK 3 S TENSOR REMARK 3 S11: -0.1140 S12: -0.9689 S13: 0.9235 REMARK 3 S21: 0.2062 S22: 0.6840 S23: -0.5484 REMARK 3 S31: 0.0444 S32: 0.6626 S33: -0.5700 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 669 A 776 REMARK 3 ORIGIN FOR THE GROUP (A): 18.1850 -4.8870 13.7450 REMARK 3 T TENSOR REMARK 3 T11: -0.1313 T22: -0.1915 REMARK 3 T33: -0.2755 T12: -0.0393 REMARK 3 T13: -0.0340 T23: -0.0420 REMARK 3 L TENSOR REMARK 3 L11: 3.8839 L22: 5.4157 REMARK 3 L33: 6.2662 L12: 0.9636 REMARK 3 L13: -0.7608 L23: 1.5645 REMARK 3 S TENSOR REMARK 3 S11: 0.1423 S12: 0.1214 S13: 0.2284 REMARK 3 S21: -0.0841 S22: -0.1645 S23: 0.1776 REMARK 3 S31: 0.1265 S32: -0.3218 S33: 0.0221 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 569 B 668 REMARK 3 ORIGIN FOR THE GROUP (A): 42.5620 13.0590 11.4930 REMARK 3 T TENSOR REMARK 3 T11: 0.0998 T22: -0.1116 REMARK 3 T33: -0.1354 T12: -0.1225 REMARK 3 T13: 0.0989 T23: -0.0208 REMARK 3 L TENSOR REMARK 3 L11: 2.9877 L22: 11.7976 REMARK 3 L33: 7.0122 L12: 1.4895 REMARK 3 L13: 1.5358 L23: 6.1510 REMARK 3 S TENSOR REMARK 3 S11: 0.1591 S12: 0.1079 S13: -0.2964 REMARK 3 S21: 0.1926 S22: 0.3472 S23: -0.5170 REMARK 3 S31: -0.6442 S32: 0.5099 S33: -0.5064 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 669 B 776 REMARK 3 ORIGIN FOR THE GROUP (A): 35.0740 -6.7530 -8.2040 REMARK 3 T TENSOR REMARK 3 T11: -0.0317 T22: -0.1647 REMARK 3 T33: -0.2126 T12: 0.0725 REMARK 3 T13: 0.1298 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 4.6841 L22: 6.9501 REMARK 3 L33: 4.3435 L12: 0.1041 REMARK 3 L13: 0.8596 L23: 1.4797 REMARK 3 S TENSOR REMARK 3 S11: 0.1178 S12: 0.2786 S13: 0.0807 REMARK 3 S21: -0.6702 S22: 0.1281 S23: -0.4091 REMARK 3 S31: -0.3950 S32: -0.0663 S33: -0.2459 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2R1Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-AUG-07. REMARK 100 THE DEPOSITION ID IS D_1000044324. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.1159 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28825 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.03200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 27.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 70.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.43700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PSDDE PEPTIDE, 20% PEG 3350, 0.2 M REMARK 280 AMMONIUM CHLORIDE, 100 MM NACL, 5 MM TRIS-HCL, 1 MM DTT, PH 7.5, REMARK 280 TEMPERATURE 298K, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.41050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.98350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.77500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.98350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.41050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.77500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A MONOMER. THERE ARE TWO BIOLOGICAL REMARK 300 UNITS IN THE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 742 REMARK 465 CYS A 743 REMARK 465 ASN A 744 REMARK 465 TYR A 745 REMARK 465 HIS A 746 REMARK 465 PRO A 747 REMARK 465 GLU A 748 REMARK 465 SER B 777 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 587 CD GLU A 587 OE1 0.070 REMARK 500 GLU A 587 CD GLU A 587 OE2 0.074 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 616 35.97 -87.88 REMARK 500 GLN A 647 107.60 -51.91 REMARK 500 GLU A 655 -119.12 69.86 REMARK 500 SER B 616 37.58 -87.09 REMARK 500 LYS B 643 32.98 72.50 REMARK 500 GLU B 655 -122.18 71.65 REMARK 500 ASN B 718 57.29 -150.71 REMARK 500 REMARK 500 REMARK: NULL DBREF 2R1Z A 569 777 UNP Q99728 BARD1_HUMAN 569 777 DBREF 2R1Z B 569 777 UNP Q99728 BARD1_HUMAN 569 777 SEQRES 1 A 209 PRO LEU VAL LEU ILE GLY SER GLY LEU SER SER GLU GLN SEQRES 2 A 209 GLN LYS MET LEU SER GLU LEU ALA VAL ILE LEU LYS ALA SEQRES 3 A 209 LYS LYS TYR THR GLU PHE ASP SER THR VAL THR HIS VAL SEQRES 4 A 209 VAL VAL PRO GLY ASP ALA VAL GLN SER THR LEU LYS CYS SEQRES 5 A 209 MET LEU GLY ILE LEU ASN GLY CYS TRP ILE LEU LYS PHE SEQRES 6 A 209 GLU TRP VAL LYS ALA CYS LEU ARG ARG LYS VAL CYS GLU SEQRES 7 A 209 GLN GLU GLU LYS TYR GLU ILE PRO GLU GLY PRO ARG ARG SEQRES 8 A 209 SER ARG LEU ASN ARG GLU GLN LEU LEU PRO LYS LEU PHE SEQRES 9 A 209 ASP GLY CYS TYR PHE TYR LEU TRP GLY THR PHE LYS HIS SEQRES 10 A 209 HIS PRO LYS ASP ASN LEU ILE LYS LEU VAL THR ALA GLY SEQRES 11 A 209 GLY GLY GLN ILE LEU SER ARG LYS PRO LYS PRO ASP SER SEQRES 12 A 209 ASP VAL THR GLN THR ILE ASN THR VAL ALA TYR HIS ALA SEQRES 13 A 209 ARG PRO ASP SER ASP GLN ARG PHE CYS THR GLN TYR ILE SEQRES 14 A 209 ILE TYR GLU ASP LEU CYS ASN TYR HIS PRO GLU ARG VAL SEQRES 15 A 209 ARG GLN GLY LYS VAL TRP LYS ALA PRO SER SER TRP PHE SEQRES 16 A 209 ILE ASP CYS VAL MET SER PHE GLU LEU LEU PRO LEU ASP SEQRES 17 A 209 SER SEQRES 1 B 209 PRO LEU VAL LEU ILE GLY SER GLY LEU SER SER GLU GLN SEQRES 2 B 209 GLN LYS MET LEU SER GLU LEU ALA VAL ILE LEU LYS ALA SEQRES 3 B 209 LYS LYS TYR THR GLU PHE ASP SER THR VAL THR HIS VAL SEQRES 4 B 209 VAL VAL PRO GLY ASP ALA VAL GLN SER THR LEU LYS CYS SEQRES 5 B 209 MET LEU GLY ILE LEU ASN GLY CYS TRP ILE LEU LYS PHE SEQRES 6 B 209 GLU TRP VAL LYS ALA CYS LEU ARG ARG LYS VAL CYS GLU SEQRES 7 B 209 GLN GLU GLU LYS TYR GLU ILE PRO GLU GLY PRO ARG ARG SEQRES 8 B 209 SER ARG LEU ASN ARG GLU GLN LEU LEU PRO LYS LEU PHE SEQRES 9 B 209 ASP GLY CYS TYR PHE TYR LEU TRP GLY THR PHE LYS HIS SEQRES 10 B 209 HIS PRO LYS ASP ASN LEU ILE LYS LEU VAL THR ALA GLY SEQRES 11 B 209 GLY GLY GLN ILE LEU SER ARG LYS PRO LYS PRO ASP SER SEQRES 12 B 209 ASP VAL THR GLN THR ILE ASN THR VAL ALA TYR HIS ALA SEQRES 13 B 209 ARG PRO ASP SER ASP GLN ARG PHE CYS THR GLN TYR ILE SEQRES 14 B 209 ILE TYR GLU ASP LEU CYS ASN TYR HIS PRO GLU ARG VAL SEQRES 15 B 209 ARG GLN GLY LYS VAL TRP LYS ALA PRO SER SER TRP PHE SEQRES 16 B 209 ILE ASP CYS VAL MET SER PHE GLU LEU LEU PRO LEU ASP SEQRES 17 B 209 SER HET GOL A 801 6 HET GOL B 802 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *115(H2 O) HELIX 1 1 SER A 578 LYS A 593 1 16 HELIX 2 2 THR A 617 ASN A 626 1 10 HELIX 3 3 PHE A 633 LYS A 643 1 11 HELIX 4 4 GLN A 647 TYR A 651 5 5 HELIX 5 5 GLU A 655 GLN A 666 1 12 HELIX 6 6 PRO A 687 GLY A 698 1 12 HELIX 7 7 SER A 711 THR A 716 1 6 HELIX 8 8 SER A 728 PHE A 732 5 5 HELIX 9 9 SER A 760 PHE A 770 1 11 HELIX 10 10 SER B 578 LEU B 592 1 15 HELIX 11 11 THR B 617 ASN B 626 1 10 HELIX 12 12 PHE B 633 LYS B 643 1 11 HELIX 13 13 GLN B 647 GLU B 652 5 6 HELIX 14 14 GLU B 655 GLN B 666 1 12 HELIX 15 15 PRO B 687 GLY B 698 1 12 HELIX 16 16 SER B 711 ILE B 717 1 7 HELIX 17 17 SER B 728 PHE B 732 5 5 HELIX 18 18 SER B 760 PHE B 770 1 11 SHEET 1 A 4 LYS A 595 TYR A 597 0 SHEET 2 A 4 VAL A 571 GLY A 574 1 N LEU A 572 O LYS A 595 SHEET 3 A 4 HIS A 606 VAL A 608 1 O VAL A 608 N ILE A 573 SHEET 4 A 4 TRP A 629 LEU A 631 1 O TRP A 629 N VAL A 607 SHEET 1 B 5 GLN A 701 ILE A 702 0 SHEET 2 B 5 TYR A 676 LEU A 679 1 N PHE A 677 O GLN A 701 SHEET 3 B 5 GLN A 735 TYR A 739 1 O TYR A 736 N TYR A 678 SHEET 4 B 5 VAL A 755 PRO A 759 1 O TRP A 756 N ILE A 737 SHEET 5 B 5 ARG A 751 GLN A 752 -1 N GLN A 752 O VAL A 755 SHEET 1 C 4 LYS B 595 TYR B 597 0 SHEET 2 C 4 VAL B 571 GLY B 574 1 N LEU B 572 O LYS B 595 SHEET 3 C 4 HIS B 606 VAL B 609 1 O VAL B 608 N ILE B 573 SHEET 4 C 4 TRP B 629 LYS B 632 1 O TRP B 629 N VAL B 607 SHEET 1 D 5 GLN B 701 ILE B 702 0 SHEET 2 D 5 TYR B 676 LEU B 679 1 N PHE B 677 O GLN B 701 SHEET 3 D 5 GLN B 735 TYR B 739 1 O ILE B 738 N TYR B 678 SHEET 4 D 5 VAL B 755 PRO B 759 1 O TRP B 756 N ILE B 737 SHEET 5 D 5 ARG B 751 GLN B 752 -1 N GLN B 752 O VAL B 755 CISPEP 1 ASP B 741 LEU B 742 0 24.86 CRYST1 56.821 75.550 117.967 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017599 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013236 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008477 0.00000