PDB Short entry for 2XNF
HEADER    TRANSCRIPTION                           02-AUG-10   2XNF              
TITLE     THE MEDIATOR MED25 ACTIVATOR INTERACTION DOMAIN: STRUCTURE AND        
TITLE    2 COOPERATIVE BINDING OF VP16 SUBDOMAINS                               
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 25;    
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: MED25 ACID DOMAIN, RESIDUES 394-543;                       
COMPND   5 SYNONYM: MEDIATOR COMPLEX SUBUNIT 25, ACTIVATOR-RECRUITED COFACTOR   
COMPND   6  92 KDA COMPONENT, ARC92, ACTIVATOR INTERACTION DOMAIN-CONTAINING    
COMPND   7  PROTEIN 1, P78, MED25;                                              
COMPND   8 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   6 EXPRESSION_SYSTEM_TAXID: 562                                         
KEYWDS    TRANSCRIPTION, ACTIVATED TRANSCRIPTION, MEDIATOR                      
EXPDTA    SOLUTION NMR                                                          
NUMMDL    10                                                                    
AUTHOR    E.VOJNIC,A.MOURAO,M.SEIZL,B.SIMON,L.WENZECK,L.LARIVIERE,S.BAUMLI,     
AUTHOR   2 M.MEISTERERNST,M.SATTLER,P.CRAMER                                    
REVDAT   2   20-APR-11 2XNF    1       JRNL                                     
REVDAT   1   09-MAR-11 2XNF    0                                                
JRNL        AUTH   E.VOJNIC,A.MOURAO,M.SEIZL,B.SIMON,L.WENZECK,L.LARIVIERE,     
JRNL        AUTH 2 S.BAUMLI,K.BAUMGART,M.MEISTERERNST,M.SATTLER,P.CRAMER        
JRNL        TITL   STRUCTURE AND VP16 BINDING OF THE MEDIATOR MED25 ACTIVATOR   
JRNL        TITL 2 INTERACTION DOMAIN.                                          
JRNL        REF    NAT.STRUCT.MOL.BIOL.          V.  18   404 2011              
JRNL        REFN                   ISSN 1545-9993                               
JRNL        PMID   21378965                                                     
JRNL        DOI    10.1038/NSMB.1997                                            
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : CNS                                                  
REMARK   3   AUTHORS     : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-              
REMARK   3                 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,READ, RICE,   
REMARK   3                 SIMONSON,WARREN                                      
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: WATER-REFINED                             
REMARK   4                                                                      
REMARK   4 2XNF COMPLIES WITH FORMAT V. 3.20, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-AUG-10.                  
REMARK 100 THE PDBE ID CODE IS EBI-44928.                                       
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 295.0; 295.0                       
REMARK 210  PH                             : 6.5; 6.5                           
REMARK 210  IONIC STRENGTH                 : 100; 100 MM                        
REMARK 210  PRESSURE                       : 1.0 ATM; 1.0 ATM                   
REMARK 210  SAMPLE CONTENTS                : 90%WATER/10% D2O                   
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : NOESY; HSQC; HNCA; HNCACB;         
REMARK 210                                   CBCACONH; HCCH-TOCSY               
REMARK 210  SPECTROMETER FIELD STRENGTH    : 900 MHZ; 600 MHZ                   
REMARK 210  SPECTROMETER MODEL             : AVANCE; DMX                        
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : NMRVIEW                            
REMARK 210   METHOD USED                   : CYANA                              
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 100                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 10                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : ENERGY                             
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING MULTIDIMENSIONAL NMR      
REMARK 210  SPECTROSCOPY ON 13C, 15N-LABELED MED25 ACID DOMAIN                  
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS                                      
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)               
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   RES CSSEQI ATM2   DEVIATION                     
REMARK 500  1 ASN A 434   C     ASN A 434   O       0.130                       
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 SER A 394      -50.87     68.74                                   
REMARK 500  1 SER A 396      -15.23   -141.62                                   
REMARK 500  1 SER A 416      -49.58     71.16                                   
REMARK 500  1 LYS A 422     -175.88     57.20                                   
REMARK 500  1 HIS A 435      148.10    -38.43                                   
REMARK 500  1 ASN A 477       78.55    -66.84                                   
REMARK 500  1 THR A 503      -38.58   -158.49                                   
REMARK 500  1 CYS A 506      -75.24   -104.29                                   
REMARK 500  1 GLU A 507       26.41   -168.77                                   
REMARK 500  1 VAL A 508      -97.66     67.35                                   
REMARK 500  1 HIS A 548       86.81     51.83                                   
REMARK 500  2 ASN A 397      -53.89   -130.58                                   
REMARK 500  2 ALA A 401      -46.00   -132.55                                   
REMARK 500  2 LYS A 411       86.67     64.43                                   
REMARK 500  2 PRO A 412      108.23    -43.69                                   
REMARK 500  2 HIS A 435      131.51    -27.56                                   
REMARK 500  2 THR A 441       31.42    -74.43                                   
REMARK 500  2 CYS A 506      -78.42   -111.79                                   
REMARK 500  2 ARG A 509      165.47     72.69                                   
REMARK 500  2 HIS A 547      174.73     65.63                                   
REMARK 500  2 HIS A 550      -56.31   -146.69                                   
REMARK 500  3 VAL A 395      -32.97   -142.01                                   
REMARK 500  3 THR A 421       90.23     60.61                                   
REMARK 500  3 HIS A 435      152.90    -19.53                                   
REMARK 500  3 ASN A 477       47.90    -76.44                                   
REMARK 500  3 THR A 503      -25.31    172.32                                   
REMARK 500  3 HIS A 548      -74.21    -56.34                                   
REMARK 500  3 HIS A 549      -44.73   -144.47                                   
REMARK 500  4 ASN A 397      -52.30     68.18                                   
REMARK 500  4 PRO A 412      -72.66    -87.94                                   
REMARK 500  4 LYS A 413      136.90   -174.79                                   
REMARK 500  4 ASN A 420       83.14    175.71                                   
REMARK 500  4 HIS A 435      157.05    -25.15                                   
REMARK 500  4 ASN A 438       94.01    178.81                                   
REMARK 500  4 ASN A 477       20.81    -77.55                                   
REMARK 500  4 PRO A 501      107.57    -58.30                                   
REMARK 500  4 HIS A 547      156.78     73.25                                   
REMARK 500  5 SER A 396     -159.37   -147.58                                   
REMARK 500  5 ASN A 397     -156.44     68.38                                   
REMARK 500  5 LYS A 411       82.22     44.48                                   
REMARK 500  5 ASN A 420      -69.17     65.88                                   
REMARK 500  5 HIS A 435      161.42    -34.35                                   
REMARK 500  5 ASN A 438       95.66   -165.25                                   
REMARK 500  5 THR A 503      -46.93   -134.90                                   
REMARK 500  5 HIS A 548       77.07     58.91                                   
REMARK 500  5 HIS A 550      166.07     63.47                                   
REMARK 500  6 SER A 396       30.63    -98.73                                   
REMARK 500  6 GLU A 410      -69.71    166.74                                   
REMARK 500  6 SER A 416      -74.62   -156.04                                   
REMARK 500  6 HIS A 435      160.17    -33.00                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS      93 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: PLANAR GROUPS                                              
REMARK 500                                                                      
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL                 
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE                    
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN                    
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS                        
REMARK 500 AN RMSD GREATER THAN THIS VALUE                                      
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        RMS     TYPE                                    
REMARK 500  1 ARG A 538         0.10    SIDE CHAIN                              
REMARK 500  3 ARG A 425         0.08    SIDE CHAIN                              
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CHIRAL CENTERS                                             
REMARK 500                                                                      
REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL                     
REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY                      
REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR                        
REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE                                    
REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN                            
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE                   
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16)       
REMARK 500                                                                      
REMARK 500  M RES CSSEQI    IMPROPER   EXPECTED   FOUND DETAILS                 
REMARK 500  7 LYS A 520        24.7      L          L   OUTSIDE RANGE           
REMARK 500 10 HIS A 435        24.6      L          L   OUTSIDE RANGE           
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 700                                                                      
REMARK 700 SHEET                                                                
REMARK 700 DETERMINATION METHOD: DSSP                                           
REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS          
REMARK 700 BELOW IS ACTUALLY AN  7-STRANDED BARREL THIS IS REPRESENTED BY       
REMARK 700 A  8-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS              
REMARK 700 ARE IDENTICAL.                                                       
DBREF  2XNF A  394   543  UNP    Q71SY5   MED25_HUMAN    394    543             
SEQADV 2XNF MET A  393  UNP  Q71SY5              EXPRESSION TAG                 
SEQADV 2XNF LEU A  544  UNP  Q71SY5              EXPRESSION TAG                 
SEQADV 2XNF GLU A  545  UNP  Q71SY5              EXPRESSION TAG                 
SEQADV 2XNF HIS A  546  UNP  Q71SY5              EXPRESSION TAG                 
SEQADV 2XNF HIS A  547  UNP  Q71SY5              EXPRESSION TAG                 
SEQADV 2XNF HIS A  548  UNP  Q71SY5              EXPRESSION TAG                 
SEQADV 2XNF HIS A  549  UNP  Q71SY5              EXPRESSION TAG                 
SEQADV 2XNF HIS A  550  UNP  Q71SY5              EXPRESSION TAG                 
SEQADV 2XNF HIS A  551  UNP  Q71SY5              EXPRESSION TAG                 
SEQRES   1 A  159  MET SER VAL SER ASN LYS LEU LEU ALA TRP SER GLY VAL          
SEQRES   2 A  159  LEU GLU TRP GLN GLU LYS PRO LYS PRO ALA SER VAL ASP          
SEQRES   3 A  159  ALA ASN THR LYS LEU THR ARG SER LEU PRO CYS GLN VAL          
SEQRES   4 A  159  TYR VAL ASN HIS GLY GLU ASN LEU LYS THR GLU GLN TRP          
SEQRES   5 A  159  PRO GLN LYS LEU ILE MET GLN LEU ILE PRO GLN GLN LEU          
SEQRES   6 A  159  LEU THR THR LEU GLY PRO LEU PHE ARG ASN SER ARG MET          
SEQRES   7 A  159  VAL GLN PHE HIS PHE THR ASN LYS ASP LEU GLU SER LEU          
SEQRES   8 A  159  LYS GLY LEU TYR ARG ILE MET GLY ASN GLY PHE ALA GLY          
SEQRES   9 A  159  CYS VAL HIS PHE PRO HIS THR ALA PRO CYS GLU VAL ARG          
SEQRES  10 A  159  VAL LEU MET LEU LEU TYR SER SER LYS LYS LYS ILE PHE          
SEQRES  11 A  159  MET GLY LEU ILE PRO TYR ASP GLN SER GLY PHE VAL ASN          
SEQRES  12 A  159  GLY ILE ARG GLN VAL ILE THR ASN LEU GLU HIS HIS HIS          
SEQRES  13 A  159  HIS HIS HIS                                                  
HELIX    1   1 LYS A  440  TRP A  444  5                                   5    
HELIX    2   2 GLN A  455  THR A  459  1                                   5    
HELIX    3   3 THR A  460  ARG A  466  5                                   7    
HELIX    4   4 ASP A  479  ASN A  492  1                                  14    
HELIX    5   5 ASP A  529  HIS A  548  1                                  20    
SHEET    1  AA 8 LEU A 399  GLN A 409  0                                        
SHEET    2  AA 8 THR A 424  ASN A 434 -1  O  ARG A 425   N  TRP A 408           
SHEET    3  AA 8 SER A 468  PHE A 475 -1  O  MET A 470   N  ASN A 434           
SHEET    4  AA 8 ILE A 521  PRO A 527 -1  O  PHE A 522   N  PHE A 473           
SHEET    5  AA 8 VAL A 510  SER A 516 -1  N  VAL A 510   O  PRO A 527           
SHEET    6  AA 8 PHE A 494  HIS A 499 -1  O  GLY A 496   N  LEU A 513           
SHEET    7  AA 8 LYS A 447  PRO A 454 -1  O  ILE A 449   N  HIS A 499           
SHEET    8  AA 8 LEU A 399  GLN A 409  1  O  VAL A 405   N  LEU A 448           
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000