PDB Short entry for 3A8W HEADER TRANSFERASE 11-OCT-09 3A8W TITLE CRYSTAL STRUCTURE OF PKCIOTA KINASE DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN KINASE C IOTA TYPE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 249-588; COMPND 5 SYNONYM: NPKC-IOTA, ATYPICAL PROTEIN KINASE C-LAMBDA/IOTA, APKC- COMPND 6 LAMBDA/IOTA, PRKC-LAMBDA/IOTA; COMPND 7 EC: 2.7.11.13; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS PROTEIN KINASE C IOTA, KINASE DOMAIN, ATP COMPLEX, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.TAKIMURA,K.KAMATA REVDAT 3 11-OCT-17 3A8W 1 REMARK REVDAT 2 04-APR-12 3A8W 1 JRNL VERSN REVDAT 1 05-MAY-10 3A8W 0 JRNL AUTH T.TAKIMURA,K.KAMATA,K.FUKASAWA,H.OHSAWA,H.KOMATANI, JRNL AUTH 2 T.YOSHIZUMI,I.TAKAHASHI,H.KOTANI,Y.IWASAWA JRNL TITL STRUCTURES OF THE PKC-IOTA KINASE DOMAIN IN ITS ATP-BOUND JRNL TITL 2 AND APO FORMS REVEAL DEFINED STRUCTURES OF RESIDUES 533-551 JRNL TITL 3 IN THE C-TERMINAL TAIL AND THEIR ROLES IN ATP BINDING JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 66 577 2010 JRNL REFN ISSN 0907-4449 JRNL PMID 20445233 JRNL DOI 10.1107/S0907444910005639 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 46144 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.250 REMARK 3 R VALUE (WORKING SET) : 0.247 REMARK 3 FREE R VALUE : 0.301 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2332 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3189 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.3290 REMARK 3 BIN FREE R VALUE SET COUNT : 182 REMARK 3 BIN FREE R VALUE : 0.3650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5369 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 67 REMARK 3 SOLVENT ATOMS : 162 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.14000 REMARK 3 B22 (A**2) : -0.36000 REMARK 3 B33 (A**2) : 1.50000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.270 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.230 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.182 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.870 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.921 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.878 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5568 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7540 ; 1.286 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 651 ; 7.928 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 285 ;38.148 ;24.246 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 956 ;19.095 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;23.044 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 792 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4243 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3268 ; 1.401 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5285 ; 2.375 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2300 ; 3.592 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2255 ; 5.354 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3A8W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000028958. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46708 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 28.6800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.24000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, AMMONIUM SULFATE, PH 5.5, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 103.19750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 103.19750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 42.51950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.56800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 42.51950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.56800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 103.19750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 42.51950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 44.56800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 103.19750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 42.51950 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 44.56800 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 235 REMARK 465 ALA A 236 REMARK 465 ASP A 283 REMARK 465 ASP A 284 REMARK 465 GLU A 285 REMARK 465 ASP A 286 REMARK 465 ILE A 446 REMARK 465 VAL A 447 REMARK 465 GLY A 448 REMARK 465 SER A 449 REMARK 465 SER A 450 REMARK 465 ASP A 451 REMARK 465 ASN A 452 REMARK 465 PRO A 453 REMARK 465 ASP A 454 REMARK 465 GLN A 455 REMARK 465 ASN A 456 REMARK 465 GLY B 235 REMARK 465 ALA B 236 REMARK 465 LEU B 395 REMARK 465 ARG B 396 REMARK 465 PRO B 397 REMARK 465 ILE B 446 REMARK 465 VAL B 447 REMARK 465 GLY B 448 REMARK 465 SER B 449 REMARK 465 SER B 450 REMARK 465 ASP B 451 REMARK 465 ASN B 452 REMARK 465 PRO B 453 REMARK 465 ASP B 454 REMARK 465 GLN B 455 REMARK 465 ASN B 456 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 553 O HOH A 866 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 500 C - N - CA ANGL. DEV. = 9.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 300 -94.48 -86.42 REMARK 500 SER A 301 125.95 24.12 REMARK 500 ASN A 302 -13.30 79.40 REMARK 500 ARG A 339 -39.97 75.00 REMARK 500 LYS A 340 133.19 -170.05 REMARK 500 ARG A 368 -1.36 75.89 REMARK 500 ASP A 387 88.86 67.34 REMARK 500 PRO A 397 -92.93 -111.71 REMARK 500 ASP A 399 142.07 41.78 REMARK 500 GLU A 458 -35.91 -39.63 REMARK 500 PHE A 538 24.14 47.42 REMARK 500 ASP A 544 137.91 -38.31 REMARK 500 ASP B 284 -94.58 19.82 REMARK 500 ASN B 302 0.75 28.20 REMARK 500 ARG B 339 -44.87 78.05 REMARK 500 ASP B 369 26.99 -141.53 REMARK 500 ASP B 387 89.80 64.84 REMARK 500 MET B 390 5.29 -166.95 REMARK 500 ASP B 399 -167.00 -57.62 REMARK 500 SER B 402 -55.19 -127.26 REMARK 500 TPO B 403 -68.73 -16.26 REMARK 500 PHE B 404 107.95 92.93 REMARK 500 GLU B 419 -165.06 -79.18 REMARK 500 ARG B 474 -55.50 -26.97 REMARK 500 LEU B 488 42.09 -107.89 REMARK 500 GLN B 501 -62.28 -106.34 REMARK 500 ILE B 534 76.48 -106.32 REMARK 500 ARG B 563 -36.10 -37.11 REMARK 500 PHE B 570 19.75 -141.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP B 399 THR B 400 145.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 611 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3A8V RELATED DB: PDB DBREF 3A8W A 240 579 UNP P41743 KPCI_HUMAN 249 588 DBREF 3A8W B 240 579 UNP P41743 KPCI_HUMAN 249 588 SEQADV 3A8W GLY A 235 UNP P41743 EXPRESSION TAG SEQADV 3A8W ALA A 236 UNP P41743 EXPRESSION TAG SEQADV 3A8W MET A 237 UNP P41743 EXPRESSION TAG SEQADV 3A8W ASP A 238 UNP P41743 EXPRESSION TAG SEQADV 3A8W PRO A 239 UNP P41743 EXPRESSION TAG SEQADV 3A8W GLY B 235 UNP P41743 EXPRESSION TAG SEQADV 3A8W ALA B 236 UNP P41743 EXPRESSION TAG SEQADV 3A8W MET B 237 UNP P41743 EXPRESSION TAG SEQADV 3A8W ASP B 238 UNP P41743 EXPRESSION TAG SEQADV 3A8W PRO B 239 UNP P41743 EXPRESSION TAG SEQRES 1 A 345 GLY ALA MET ASP PRO LEU GLY LEU GLN ASP PHE ASP LEU SEQRES 2 A 345 LEU ARG VAL ILE GLY ARG GLY SER TYR ALA LYS VAL LEU SEQRES 3 A 345 LEU VAL ARG LEU LYS LYS THR ASP ARG ILE TYR ALA MET SEQRES 4 A 345 LYS VAL VAL LYS LYS GLU LEU VAL ASN ASP ASP GLU ASP SEQRES 5 A 345 ILE ASP TRP VAL GLN THR GLU LYS HIS VAL PHE GLU GLN SEQRES 6 A 345 ALA SER ASN HIS PRO PHE LEU VAL GLY LEU HIS SER CYS SEQRES 7 A 345 PHE GLN THR GLU SER ARG LEU PHE PHE VAL ILE GLU TYR SEQRES 8 A 345 VAL ASN GLY GLY ASP LEU MET PHE HIS MET GLN ARG GLN SEQRES 9 A 345 ARG LYS LEU PRO GLU GLU HIS ALA ARG PHE TYR SER ALA SEQRES 10 A 345 GLU ILE SER LEU ALA LEU ASN TYR LEU HIS GLU ARG GLY SEQRES 11 A 345 ILE ILE TYR ARG ASP LEU LYS LEU ASP ASN VAL LEU LEU SEQRES 12 A 345 ASP SER GLU GLY HIS ILE LYS LEU THR ASP TYR GLY MET SEQRES 13 A 345 CYS LYS GLU GLY LEU ARG PRO GLY ASP THR THR SER TPO SEQRES 14 A 345 PHE CYS GLY THR PRO ASN TYR ILE ALA PRO GLU ILE LEU SEQRES 15 A 345 ARG GLY GLU ASP TYR GLY PHE SER VAL ASP TRP TRP ALA SEQRES 16 A 345 LEU GLY VAL LEU MET PHE GLU MET MET ALA GLY ARG SER SEQRES 17 A 345 PRO PHE ASP ILE VAL GLY SER SER ASP ASN PRO ASP GLN SEQRES 18 A 345 ASN THR GLU ASP TYR LEU PHE GLN VAL ILE LEU GLU LYS SEQRES 19 A 345 GLN ILE ARG ILE PRO ARG SER LEU SER VAL LYS ALA ALA SEQRES 20 A 345 SER VAL LEU LYS SER PHE LEU ASN LYS ASP PRO LYS GLU SEQRES 21 A 345 ARG LEU GLY CYS HIS PRO GLN THR GLY PHE ALA ASP ILE SEQRES 22 A 345 GLN GLY HIS PRO PHE PHE ARG ASN VAL ASP TRP ASP MET SEQRES 23 A 345 MET GLU GLN LYS GLN VAL VAL PRO PRO PHE LYS PRO ASN SEQRES 24 A 345 ILE SER GLY GLU PHE GLY LEU ASP ASN PHE ASP SER GLN SEQRES 25 A 345 PHE THR ASN GLU PRO VAL GLN LEU TPO PRO ASP ASP ASP SEQRES 26 A 345 ASP ILE VAL ARG LYS ILE ASP GLN SER GLU PHE GLU GLY SEQRES 27 A 345 PHE GLU TYR ILE ASN PRO LEU SEQRES 1 B 345 GLY ALA MET ASP PRO LEU GLY LEU GLN ASP PHE ASP LEU SEQRES 2 B 345 LEU ARG VAL ILE GLY ARG GLY SER TYR ALA LYS VAL LEU SEQRES 3 B 345 LEU VAL ARG LEU LYS LYS THR ASP ARG ILE TYR ALA MET SEQRES 4 B 345 LYS VAL VAL LYS LYS GLU LEU VAL ASN ASP ASP GLU ASP SEQRES 5 B 345 ILE ASP TRP VAL GLN THR GLU LYS HIS VAL PHE GLU GLN SEQRES 6 B 345 ALA SER ASN HIS PRO PHE LEU VAL GLY LEU HIS SER CYS SEQRES 7 B 345 PHE GLN THR GLU SER ARG LEU PHE PHE VAL ILE GLU TYR SEQRES 8 B 345 VAL ASN GLY GLY ASP LEU MET PHE HIS MET GLN ARG GLN SEQRES 9 B 345 ARG LYS LEU PRO GLU GLU HIS ALA ARG PHE TYR SER ALA SEQRES 10 B 345 GLU ILE SER LEU ALA LEU ASN TYR LEU HIS GLU ARG GLY SEQRES 11 B 345 ILE ILE TYR ARG ASP LEU LYS LEU ASP ASN VAL LEU LEU SEQRES 12 B 345 ASP SER GLU GLY HIS ILE LYS LEU THR ASP TYR GLY MET SEQRES 13 B 345 CYS LYS GLU GLY LEU ARG PRO GLY ASP THR THR SER TPO SEQRES 14 B 345 PHE CYS GLY THR PRO ASN TYR ILE ALA PRO GLU ILE LEU SEQRES 15 B 345 ARG GLY GLU ASP TYR GLY PHE SER VAL ASP TRP TRP ALA SEQRES 16 B 345 LEU GLY VAL LEU MET PHE GLU MET MET ALA GLY ARG SER SEQRES 17 B 345 PRO PHE ASP ILE VAL GLY SER SER ASP ASN PRO ASP GLN SEQRES 18 B 345 ASN THR GLU ASP TYR LEU PHE GLN VAL ILE LEU GLU LYS SEQRES 19 B 345 GLN ILE ARG ILE PRO ARG SER LEU SER VAL LYS ALA ALA SEQRES 20 B 345 SER VAL LEU LYS SER PHE LEU ASN LYS ASP PRO LYS GLU SEQRES 21 B 345 ARG LEU GLY CYS HIS PRO GLN THR GLY PHE ALA ASP ILE SEQRES 22 B 345 GLN GLY HIS PRO PHE PHE ARG ASN VAL ASP TRP ASP MET SEQRES 23 B 345 MET GLU GLN LYS GLN VAL VAL PRO PRO PHE LYS PRO ASN SEQRES 24 B 345 ILE SER GLY GLU PHE GLY LEU ASP ASN PHE ASP SER GLN SEQRES 25 B 345 PHE THR ASN GLU PRO VAL GLN LEU TPO PRO ASP ASP ASP SEQRES 26 B 345 ASP ILE VAL ARG LYS ILE ASP GLN SER GLU PHE GLU GLY SEQRES 27 B 345 PHE GLU TYR ILE ASN PRO LEU MODRES 3A8W TPO A 403 THR PHOSPHOTHREONINE MODRES 3A8W TPO A 555 THR PHOSPHOTHREONINE MODRES 3A8W TPO B 403 THR PHOSPHOTHREONINE MODRES 3A8W TPO B 555 THR PHOSPHOTHREONINE HET TPO A 403 11 HET TPO A 555 11 HET TPO B 403 11 HET TPO B 555 11 HET ATP A 601 31 HET ATP B 601 31 HET SO4 B 611 5 HETNAM TPO PHOSPHOTHREONINE HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM SO4 SULFATE ION HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 TPO 4(C4 H10 N O6 P) FORMUL 3 ATP 2(C10 H16 N5 O13 P3) FORMUL 5 SO4 O4 S 2- FORMUL 6 HOH *162(H2 O) HELIX 1 1 GLY A 241 GLN A 243 5 3 HELIX 2 2 LYS A 266 ASP A 268 5 3 HELIX 3 3 GLU A 279 VAL A 281 5 3 HELIX 4 4 ASP A 288 SER A 301 1 14 HELIX 5 5 ASP A 330 ARG A 339 1 10 HELIX 6 6 PRO A 342 ARG A 363 1 22 HELIX 7 7 LYS A 371 ASP A 373 5 3 HELIX 8 8 THR A 407 ILE A 411 5 5 HELIX 9 9 ALA A 412 ARG A 417 1 6 HELIX 10 10 PHE A 423 GLY A 440 1 18 HELIX 11 11 THR A 457 LYS A 468 1 12 HELIX 12 12 SER A 477 LEU A 488 1 12 HELIX 13 13 ASP A 491 ARG A 495 5 5 HELIX 14 14 THR A 502 HIS A 510 1 9 HELIX 15 15 PRO A 511 ARG A 514 5 4 HELIX 16 16 ASP A 517 GLN A 523 1 7 HELIX 17 17 GLY A 536 PHE A 543 5 8 HELIX 18 18 ASP A 544 ASN A 549 1 6 HELIX 19 19 ASP A 558 ARG A 563 1 6 HELIX 20 20 LYS A 564 ILE A 565 5 2 HELIX 21 21 ASP A 566 GLU A 571 5 6 HELIX 22 22 GLY B 241 GLN B 243 5 3 HELIX 23 23 GLU B 279 ASN B 282 5 4 HELIX 24 24 ASP B 283 GLU B 285 5 3 HELIX 25 25 ASP B 286 ALA B 300 1 15 HELIX 26 26 ASP B 330 ARG B 339 1 10 HELIX 27 27 PRO B 342 ARG B 363 1 22 HELIX 28 28 LYS B 371 ASP B 373 5 3 HELIX 29 29 THR B 407 ILE B 411 5 5 HELIX 30 30 ALA B 412 ARG B 417 1 6 HELIX 31 31 PHE B 423 GLY B 440 1 18 HELIX 32 32 THR B 457 LYS B 468 1 12 HELIX 33 33 SER B 477 LEU B 488 1 12 HELIX 34 34 ASP B 491 ARG B 495 5 5 HELIX 35 35 THR B 502 GLY B 509 1 8 HELIX 36 36 HIS B 510 ARG B 514 5 5 HELIX 37 37 ASP B 517 GLN B 523 1 7 HELIX 38 38 GLY B 536 PHE B 543 5 8 HELIX 39 39 ASP B 544 ASN B 549 1 6 HELIX 40 40 ASP B 558 ARG B 563 1 6 HELIX 41 41 ASP B 566 GLU B 571 5 6 SHEET 1 A 6 PHE A 245 ARG A 253 0 SHEET 2 A 6 LYS A 258 LEU A 264 -1 O LEU A 261 N ARG A 249 SHEET 3 A 6 ILE A 270 LYS A 277 -1 O TYR A 271 N VAL A 262 SHEET 4 A 6 ARG A 318 ILE A 323 -1 O LEU A 319 N VAL A 276 SHEET 5 A 6 LEU A 309 GLN A 314 -1 N SER A 311 O VAL A 322 SHEET 6 A 6 TYR A 575 ILE A 576 -1 O TYR A 575 N CYS A 312 SHEET 1 B 2 ILE A 365 ILE A 366 0 SHEET 2 B 2 LYS A 392 GLU A 393 -1 O LYS A 392 N ILE A 366 SHEET 1 C 2 VAL A 375 LEU A 377 0 SHEET 2 C 2 ILE A 383 LEU A 385 -1 O LYS A 384 N LEU A 376 SHEET 1 D 6 PHE B 245 ARG B 253 0 SHEET 2 D 6 ALA B 257 LEU B 264 -1 O VAL B 259 N GLY B 252 SHEET 3 D 6 ILE B 270 LYS B 277 -1 O TYR B 271 N VAL B 262 SHEET 4 D 6 ARG B 318 ILE B 323 -1 O LEU B 319 N VAL B 276 SHEET 5 D 6 LEU B 309 GLN B 314 -1 N SER B 311 O VAL B 322 SHEET 6 D 6 TYR B 575 ILE B 576 -1 O TYR B 575 N CYS B 312 SHEET 1 E 2 VAL B 375 LEU B 377 0 SHEET 2 E 2 ILE B 383 LEU B 385 -1 O LYS B 384 N LEU B 376 LINK C SER A 402 N TPO A 403 1555 1555 1.33 LINK C TPO A 403 N PHE A 404 1555 1555 1.33 LINK C LEU A 554 N TPO A 555 1555 1555 1.33 LINK C TPO A 555 N PRO A 556 1555 1555 1.34 LINK C SER B 402 N TPO B 403 1555 1555 1.33 LINK C TPO B 403 N PHE B 404 1555 1555 1.34 LINK C LEU B 554 N TPO B 555 1555 1555 1.33 LINK C TPO B 555 N PRO B 556 1555 1555 1.35 SITE 1 AC1 22 ILE A 251 GLY A 252 GLY A 254 SER A 255 SITE 2 AC1 22 TYR A 256 ALA A 257 VAL A 259 LYS A 274 SITE 3 AC1 22 ILE A 323 GLU A 324 VAL A 326 ASP A 387 SITE 4 AC1 22 PHE A 543 HOH A 706 HOH A 714 HOH A 732 SITE 5 AC1 22 HOH A 736 HOH A 738 HOH A 742 HOH A 794 SITE 6 AC1 22 HOH A 804 HOH A 847 SITE 1 AC2 21 ILE B 251 GLY B 252 ARG B 253 GLY B 254 SITE 2 AC2 21 SER B 255 TYR B 256 ALA B 257 VAL B 259 SITE 3 AC2 21 LYS B 274 VAL B 307 ILE B 323 GLU B 324 SITE 4 AC2 21 VAL B 326 ASP B 387 PHE B 543 HOH B 703 SITE 5 AC2 21 HOH B 718 HOH B 728 HOH B 779 HOH B 835 SITE 6 AC2 21 HOH B 836 SITE 1 AC3 6 ARG B 337 GLN B 338 ARG B 441 PRO B 473 SITE 2 AC3 6 ARG B 474 HOH B 752 CRYST1 85.039 89.136 206.395 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011759 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011219 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004845 0.00000