PDB Short entry for 3BLJ HEADER TRANSFERASE 11-DEC-07 3BLJ TITLE CRYSTAL STRUCTURE OF HUMAN POLY(ADP-RIBOSE) POLYMERASE 15, CATALYTIC TITLE 2 FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLY(ADP-RIBOSE) POLYMERASE 15; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN: RESIDUES 459-656; COMPND 5 SYNONYM: PARP-15, B-AGGRESSIVE LYMPHOMA PROTEIN 3; COMPND 6 EC: 2.4.2.30; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PARP15, BAL3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) R3 PRARE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC-BSA4 KEYWDS PARP, POLY(ADP-RIBOSE) POLYMERASE, BAL-3, SGC, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, GLYCOSYLTRANSFERASE, NAD, NUCLEUS, TRANSCRIPTION, KEYWDS 3 TRANSCRIPTION REGULATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.KARLBERG,L.LEHTIO,C.H.ARROWSMITH,H.BERGLUND,R.D.BUSAM,R.COLLINS, AUTHOR 2 L.G.DAHLGREN,A.M.EDWARDS,S.FLODIN,A.FLORES,S.GRASLUND,M.HAMMARSTROM, AUTHOR 3 I.JOHANSSON,A.KALLAS,T.KOTENYOVA,M.MOCHE,M.E.NILSSON,P.NORDLUND, AUTHOR 4 T.NYMAN,C.PERSSON,J.SAGEMARK,L.SVENSSON,A.G.THORSELL,L.TRESAUGUES, AUTHOR 5 S.VAN DEN BERG,M.WELIN,J.WEIGELT,STRUCTURAL GENOMICS CONSORTIUM AUTHOR 6 (SGC) REVDAT 7 30-AUG-23 3BLJ 1 REMARK SEQADV LINK REVDAT 6 07-MAR-18 3BLJ 1 REMARK REVDAT 5 22-APR-15 3BLJ 1 JRNL REVDAT 4 04-FEB-15 3BLJ 1 JRNL REVDAT 3 13-JUL-11 3BLJ 1 VERSN REVDAT 2 24-FEB-09 3BLJ 1 VERSN REVDAT 1 25-DEC-07 3BLJ 0 JRNL AUTH T.KARLBERG,M.KLEPSCH,A.G.THORSELL,C.D.ANDERSSON,A.LINUSSON, JRNL AUTH 2 H.SCHULER JRNL TITL STRUCTURAL BASIS FOR LACK OF ADP-RIBOSYLTRANSFERASE ACTIVITY JRNL TITL 2 IN POLY(ADP-RIBOSE) POLYMERASE-13/ZINC FINGER ANTIVIRAL JRNL TITL 3 PROTEIN. JRNL REF J.BIOL.CHEM. V. 290 7336 2015 JRNL REFN ISSN 0021-9258 JRNL PMID 25635049 JRNL DOI 10.1074/JBC.M114.630160 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0040 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 24170 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1272 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1720 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 91 REMARK 3 BIN FREE R VALUE : 0.3090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3158 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 288 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.37000 REMARK 3 B22 (A**2) : 0.25000 REMARK 3 B33 (A**2) : 0.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.232 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.206 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.135 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.269 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3255 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4411 ; 1.541 ; 1.933 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 387 ; 7.036 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 166 ;35.244 ;24.096 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 529 ;14.508 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;19.074 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 462 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2537 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1415 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2182 ; 0.307 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 274 ; 0.158 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.095 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 51 ; 0.177 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 31 ; 0.178 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1952 ; 1.343 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3170 ; 2.443 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1344 ; 3.565 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1241 ; 5.232 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3BLJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1000045668. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97908 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : SI MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25446 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.13800 REMARK 200 R SYM (I) : 0.18600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.56800 REMARK 200 R SYM FOR SHELL (I) : 0.58700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2PQF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2M AMMONIUM CHLORIDE, REMARK 280 PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.60500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.14000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.06000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 79.14000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.60500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.06000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 436 REMARK 465 HIS A 437 REMARK 465 HIS A 438 REMARK 465 HIS A 439 REMARK 465 HIS A 440 REMARK 465 HIS A 441 REMARK 465 HIS A 442 REMARK 465 SER A 443 REMARK 465 SER A 444 REMARK 465 GLY A 445 REMARK 465 VAL A 446 REMARK 465 ASP A 447 REMARK 465 LEU A 448 REMARK 465 GLY A 449 REMARK 465 THR A 450 REMARK 465 GLU A 451 REMARK 465 ASN A 452 REMARK 465 LEU A 453 REMARK 465 TYR A 454 REMARK 465 PHE A 455 REMARK 465 GLN A 456 REMARK 465 SER A 457 REMARK 465 MET A 458 REMARK 465 ASN A 459 REMARK 465 GLY A 558 REMARK 465 LYS A 559 REMARK 465 ASN A 560 REMARK 465 ALA A 561 REMARK 465 VAL A 562 REMARK 465 MET B 436 REMARK 465 HIS B 437 REMARK 465 HIS B 438 REMARK 465 HIS B 439 REMARK 465 HIS B 440 REMARK 465 HIS B 441 REMARK 465 HIS B 442 REMARK 465 SER B 443 REMARK 465 SER B 444 REMARK 465 GLY B 445 REMARK 465 VAL B 446 REMARK 465 ASP B 447 REMARK 465 LEU B 448 REMARK 465 GLY B 449 REMARK 465 THR B 450 REMARK 465 GLU B 451 REMARK 465 ASN B 452 REMARK 465 LEU B 453 REMARK 465 TYR B 454 REMARK 465 PHE B 455 REMARK 465 GLN B 456 REMARK 465 SER B 457 REMARK 465 MET B 458 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 563 OG REMARK 470 ASN B 459 CG OD1 ND2 REMARK 470 ARG B 633 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS B 473 CB CYS B 473 SG -0.134 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 505 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 556 -77.87 -96.06 REMARK 500 SER A 583 71.67 -103.01 REMARK 500 HIS B 469 -0.90 62.62 REMARK 500 CYS B 495 53.00 -119.63 REMARK 500 ASN B 631 117.09 -173.22 REMARK 500 ASN B 644 19.56 57.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 701 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 523 O REMARK 620 2 ASN A 526 O 81.8 REMARK 620 3 HOH A 931 O 99.3 155.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 701 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 523 O REMARK 620 2 ILE B 524 O 79.0 REMARK 620 3 ASN B 526 O 74.7 89.0 REMARK 620 4 HOH B 902 O 81.8 160.8 86.3 REMARK 620 5 HOH B 950 O 169.7 94.8 97.2 104.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 702 DBREF 3BLJ A 459 656 UNP Q460N3 PAR15_HUMAN 459 656 DBREF 3BLJ B 459 656 UNP Q460N3 PAR15_HUMAN 459 656 SEQADV 3BLJ MET A 436 UNP Q460N3 EXPRESSION TAG SEQADV 3BLJ HIS A 437 UNP Q460N3 EXPRESSION TAG SEQADV 3BLJ HIS A 438 UNP Q460N3 EXPRESSION TAG SEQADV 3BLJ HIS A 439 UNP Q460N3 EXPRESSION TAG SEQADV 3BLJ HIS A 440 UNP Q460N3 EXPRESSION TAG SEQADV 3BLJ HIS A 441 UNP Q460N3 EXPRESSION TAG SEQADV 3BLJ HIS A 442 UNP Q460N3 EXPRESSION TAG SEQADV 3BLJ SER A 443 UNP Q460N3 EXPRESSION TAG SEQADV 3BLJ SER A 444 UNP Q460N3 EXPRESSION TAG SEQADV 3BLJ GLY A 445 UNP Q460N3 EXPRESSION TAG SEQADV 3BLJ VAL A 446 UNP Q460N3 EXPRESSION TAG SEQADV 3BLJ ASP A 447 UNP Q460N3 EXPRESSION TAG SEQADV 3BLJ LEU A 448 UNP Q460N3 EXPRESSION TAG SEQADV 3BLJ GLY A 449 UNP Q460N3 EXPRESSION TAG SEQADV 3BLJ THR A 450 UNP Q460N3 EXPRESSION TAG SEQADV 3BLJ GLU A 451 UNP Q460N3 EXPRESSION TAG SEQADV 3BLJ ASN A 452 UNP Q460N3 EXPRESSION TAG SEQADV 3BLJ LEU A 453 UNP Q460N3 EXPRESSION TAG SEQADV 3BLJ TYR A 454 UNP Q460N3 EXPRESSION TAG SEQADV 3BLJ PHE A 455 UNP Q460N3 EXPRESSION TAG SEQADV 3BLJ GLN A 456 UNP Q460N3 EXPRESSION TAG SEQADV 3BLJ SER A 457 UNP Q460N3 EXPRESSION TAG SEQADV 3BLJ MET A 458 UNP Q460N3 EXPRESSION TAG SEQADV 3BLJ MET B 436 UNP Q460N3 EXPRESSION TAG SEQADV 3BLJ HIS B 437 UNP Q460N3 EXPRESSION TAG SEQADV 3BLJ HIS B 438 UNP Q460N3 EXPRESSION TAG SEQADV 3BLJ HIS B 439 UNP Q460N3 EXPRESSION TAG SEQADV 3BLJ HIS B 440 UNP Q460N3 EXPRESSION TAG SEQADV 3BLJ HIS B 441 UNP Q460N3 EXPRESSION TAG SEQADV 3BLJ HIS B 442 UNP Q460N3 EXPRESSION TAG SEQADV 3BLJ SER B 443 UNP Q460N3 EXPRESSION TAG SEQADV 3BLJ SER B 444 UNP Q460N3 EXPRESSION TAG SEQADV 3BLJ GLY B 445 UNP Q460N3 EXPRESSION TAG SEQADV 3BLJ VAL B 446 UNP Q460N3 EXPRESSION TAG SEQADV 3BLJ ASP B 447 UNP Q460N3 EXPRESSION TAG SEQADV 3BLJ LEU B 448 UNP Q460N3 EXPRESSION TAG SEQADV 3BLJ GLY B 449 UNP Q460N3 EXPRESSION TAG SEQADV 3BLJ THR B 450 UNP Q460N3 EXPRESSION TAG SEQADV 3BLJ GLU B 451 UNP Q460N3 EXPRESSION TAG SEQADV 3BLJ ASN B 452 UNP Q460N3 EXPRESSION TAG SEQADV 3BLJ LEU B 453 UNP Q460N3 EXPRESSION TAG SEQADV 3BLJ TYR B 454 UNP Q460N3 EXPRESSION TAG SEQADV 3BLJ PHE B 455 UNP Q460N3 EXPRESSION TAG SEQADV 3BLJ GLN B 456 UNP Q460N3 EXPRESSION TAG SEQADV 3BLJ SER B 457 UNP Q460N3 EXPRESSION TAG SEQADV 3BLJ MET B 458 UNP Q460N3 EXPRESSION TAG SEQRES 1 A 221 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 221 GLY THR GLU ASN LEU TYR PHE GLN SER MET ASN LEU PRO SEQRES 3 A 221 GLU HIS TRP THR ASP MET ASN HIS GLN LEU PHE CYS MET SEQRES 4 A 221 VAL GLN LEU GLU PRO GLY GLN SER GLU TYR ASN THR ILE SEQRES 5 A 221 LYS ASP LYS PHE THR ARG THR CYS SER SER TYR ALA ILE SEQRES 6 A 221 GLU LYS ILE GLU ARG ILE GLN ASN ALA PHE LEU TRP GLN SEQRES 7 A 221 SER TYR GLN VAL LYS LYS ARG GLN MET ASP ILE LYS ASN SEQRES 8 A 221 ASP HIS LYS ASN ASN GLU ARG LEU LEU PHE HIS GLY THR SEQRES 9 A 221 ASP ALA ASP SER VAL PRO TYR VAL ASN GLN HIS GLY PHE SEQRES 10 A 221 ASN ARG SER CYS ALA GLY LYS ASN ALA VAL SER TYR GLY SEQRES 11 A 221 LYS GLY THR TYR PHE ALA VAL ASP ALA SER TYR SER ALA SEQRES 12 A 221 LYS ASP THR TYR SER LYS PRO ASP SER ASN GLY ARG LYS SEQRES 13 A 221 HIS MET TYR VAL VAL ARG VAL LEU THR GLY VAL PHE THR SEQRES 14 A 221 LYS GLY ARG ALA GLY LEU VAL THR PRO PRO PRO LYS ASN SEQRES 15 A 221 PRO HIS ASN PRO THR ASP LEU PHE ASP SER VAL THR ASN SEQRES 16 A 221 ASN THR ARG SER PRO LYS LEU PHE VAL VAL PHE PHE ASP SEQRES 17 A 221 ASN GLN ALA TYR PRO GLU TYR LEU ILE THR PHE THR ALA SEQRES 1 B 221 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 221 GLY THR GLU ASN LEU TYR PHE GLN SER MET ASN LEU PRO SEQRES 3 B 221 GLU HIS TRP THR ASP MET ASN HIS GLN LEU PHE CYS MET SEQRES 4 B 221 VAL GLN LEU GLU PRO GLY GLN SER GLU TYR ASN THR ILE SEQRES 5 B 221 LYS ASP LYS PHE THR ARG THR CYS SER SER TYR ALA ILE SEQRES 6 B 221 GLU LYS ILE GLU ARG ILE GLN ASN ALA PHE LEU TRP GLN SEQRES 7 B 221 SER TYR GLN VAL LYS LYS ARG GLN MET ASP ILE LYS ASN SEQRES 8 B 221 ASP HIS LYS ASN ASN GLU ARG LEU LEU PHE HIS GLY THR SEQRES 9 B 221 ASP ALA ASP SER VAL PRO TYR VAL ASN GLN HIS GLY PHE SEQRES 10 B 221 ASN ARG SER CYS ALA GLY LYS ASN ALA VAL SER TYR GLY SEQRES 11 B 221 LYS GLY THR TYR PHE ALA VAL ASP ALA SER TYR SER ALA SEQRES 12 B 221 LYS ASP THR TYR SER LYS PRO ASP SER ASN GLY ARG LYS SEQRES 13 B 221 HIS MET TYR VAL VAL ARG VAL LEU THR GLY VAL PHE THR SEQRES 14 B 221 LYS GLY ARG ALA GLY LEU VAL THR PRO PRO PRO LYS ASN SEQRES 15 B 221 PRO HIS ASN PRO THR ASP LEU PHE ASP SER VAL THR ASN SEQRES 16 B 221 ASN THR ARG SER PRO LYS LEU PHE VAL VAL PHE PHE ASP SEQRES 17 B 221 ASN GLN ALA TYR PRO GLU TYR LEU ILE THR PHE THR ALA HET NA A 701 1 HET CL A 703 1 HET GOL A 702 6 HET NA B 701 1 HET GOL B 702 6 HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NA 2(NA 1+) FORMUL 4 CL CL 1- FORMUL 5 GOL 2(C3 H8 O3) FORMUL 8 HOH *288(H2 O) HELIX 1 1 GLN A 481 SER A 496 1 16 HELIX 2 2 ALA A 509 ASN A 526 1 18 HELIX 3 3 ASP A 540 ASP A 542 5 3 HELIX 4 4 SER A 543 GLY A 551 1 9 HELIX 5 5 ASP A 573 LYS A 579 1 7 HELIX 6 6 GLN B 481 CYS B 495 1 15 HELIX 7 7 ALA B 509 ASN B 526 1 18 HELIX 8 8 ASP B 540 ASP B 542 5 3 HELIX 9 9 SER B 543 GLY B 551 1 9 HELIX 10 10 ASN B 553 ALA B 557 5 5 HELIX 11 11 ASP B 573 ALA B 578 1 6 SHEET 1 A 5 PHE A 472 GLN A 476 0 SHEET 2 A 5 ALA A 499 ASN A 508 -1 O ARG A 505 N VAL A 475 SHEET 3 A 5 ALA A 646 THR A 655 -1 O LEU A 651 N GLU A 504 SHEET 4 A 5 LYS A 591 LEU A 599 -1 N LYS A 591 O PHE A 654 SHEET 5 A 5 GLU A 532 THR A 539 -1 N LEU A 535 O VAL A 596 SHEET 1 B 4 THR A 568 ALA A 571 0 SHEET 2 B 4 LEU A 637 VAL A 640 -1 O VAL A 640 N THR A 568 SHEET 3 B 4 SER A 627 THR A 629 -1 N VAL A 628 O VAL A 639 SHEET 4 B 4 PHE A 603 LYS A 605 1 N THR A 604 O THR A 629 SHEET 1 C 5 PHE B 472 GLN B 476 0 SHEET 2 C 5 ALA B 499 ASN B 508 -1 O ARG B 505 N VAL B 475 SHEET 3 C 5 ALA B 646 THR B 655 -1 O THR B 653 N LYS B 502 SHEET 4 C 5 LYS B 591 LEU B 599 -1 N LYS B 591 O PHE B 654 SHEET 5 C 5 GLU B 532 THR B 539 -1 N HIS B 537 O TYR B 594 SHEET 1 D 4 THR B 568 ALA B 571 0 SHEET 2 D 4 LEU B 637 VAL B 640 -1 O VAL B 640 N THR B 568 SHEET 3 D 4 SER B 627 THR B 629 -1 N VAL B 628 O VAL B 639 SHEET 4 D 4 PHE B 603 LYS B 605 1 N THR B 604 O THR B 629 LINK O ASP A 523 NA NA A 701 1555 1555 2.73 LINK O ASN A 526 NA NA A 701 1555 1555 2.32 LINK NA NA A 701 O HOH A 931 1555 1555 2.62 LINK O ASP B 523 NA NA B 701 1555 1555 2.72 LINK O ILE B 524 NA NA B 701 1555 1555 2.62 LINK O ASN B 526 NA NA B 701 1555 1555 2.44 LINK NA NA B 701 O HOH B 902 1555 1555 2.33 LINK NA NA B 701 O HOH B 950 1555 1555 2.30 SITE 1 AC1 4 ASP A 523 ILE A 524 ASN A 526 HOH A 931 SITE 1 AC2 3 GLY A 538 SER A 577 HOH A 884 SITE 1 AC3 6 ASP B 523 ILE B 524 ASN B 526 HOH B 902 SITE 2 AC3 6 HOH B 930 HOH B 950 SITE 1 AC4 6 HIS A 550 ASP A 643 HOH A 882 LYS B 518 SITE 2 AC4 6 PHE B 642 ASP B 643 SITE 1 AC5 6 MET B 522 PRO B 613 PHE B 625 ASP B 626 SITE 2 AC5 6 PHE B 642 HOH B 811 CRYST1 45.210 68.120 158.280 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022119 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014680 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006318 0.00000