PDB Short entry for 3GXE HEADER CELL ADHESION 02-APR-09 3GXE TITLE COMPLEX OF A LOW AFFINITY COLLAGEN SITE WITH THE FIBRONECTIN 8-9FNI TITLE 2 DOMAIN PAIR COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBRONECTIN; COMPND 3 CHAIN: B, A; COMPND 4 FRAGMENT: 8-9FNI, UNP RESIDUES 516-608; COMPND 5 SYNONYM: FN, COLD-INSOLUBLE GLOBULIN, CIG, UGL-Y1, UGL-Y2, UGL-Y3; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: COLLAGEN ALPHA-1(I) CHAIN; COMPND 10 CHAIN: F; COMPND 11 FRAGMENT: COLI.260, UNP RESIDUES 254-275; COMPND 12 SYNONYM: ALPHA-1 TYPE I COLLAGEN; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: COLLAGEN ALPHA-1(I) CHAIN; COMPND 16 CHAIN: E; COMPND 17 FRAGMENT: COLI.260, UNP RESIDUES 254-275; COMPND 18 SYNONYM: ALPHA-1 TYPE I COLLAGEN; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FN; SOURCE 6 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: X-33; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: GENOMIC INTEGRATION; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: STANDARD PEPTIDE SYNTHESIS; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 OTHER_DETAILS: STANDARD PEPTIDE SYNTHESIS KEYWDS PROTEIN-PEPTIDE COMPLEX, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR B.SLADEK,I.D.CAMPBELL,I.VAKONAKIS REVDAT 8 22-NOV-23 3GXE 1 REMARK REVDAT 7 01-NOV-23 3GXE 1 REMARK REVDAT 6 10-NOV-21 3GXE 1 SEQADV HETSYN REVDAT 5 29-JUL-20 3GXE 1 COMPND REMARK SEQADV HETNAM REVDAT 5 2 1 LINK SITE REVDAT 4 29-JAN-14 3GXE 1 JRNL REVDAT 3 15-MAY-13 3GXE 1 JRNL REMARK VERSN REVDAT 2 05-MAY-10 3GXE 1 MTRIX1 MTRIX2 MTRIX3 REVDAT 1 07-APR-10 3GXE 0 JRNL AUTH M.C.ERAT,B.SLADEK,I.D.CAMPBELL,I.VAKONAKIS JRNL TITL STRUCTURAL ANALYSIS OF COLLAGEN TYPE I INTERACTIONS WITH JRNL TITL 2 HUMAN FIBRONECTIN REVEALS A COOPERATIVE BINDING MODE JRNL REF J.BIOL.CHEM. V. 288 17441 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 23653354 JRNL DOI 10.1074/JBC.M113.469841 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 2009_02_15_2320_3 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.190 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 16796 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.390 REMARK 3 FREE R VALUE TEST SET COUNT : 1242 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.6550 - 5.4060 0.99 1741 127 0.2070 0.2420 REMARK 3 2 5.4060 - 4.2920 0.99 1713 135 0.1740 0.1990 REMARK 3 3 4.2920 - 3.7500 1.00 1710 144 0.1730 0.2450 REMARK 3 4 3.7500 - 3.4070 1.00 1749 136 0.1870 0.2200 REMARK 3 5 3.4070 - 3.1630 1.00 1717 138 0.2140 0.3050 REMARK 3 6 3.1630 - 2.9770 1.00 1713 145 0.2340 0.3250 REMARK 3 7 2.9770 - 2.8270 1.00 1725 134 0.2690 0.3400 REMARK 3 8 2.8270 - 2.7040 1.00 1742 124 0.2810 0.3660 REMARK 3 9 2.7040 - 2.6000 1.00 1744 159 0.3190 0.3790 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 59.82 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.990 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.66600 REMARK 3 B22 (A**2) : 2.66600 REMARK 3 B33 (A**2) : -5.33200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 1733 REMARK 3 ANGLE : 0.683 2319 REMARK 3 CHIRALITY : 0.046 221 REMARK 3 PLANARITY : 0.002 301 REMARK 3 DIHEDRAL : 12.613 612 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 516:558) OR (CHAIN A AND RESSEQ REMARK 3 1) REMARK 3 ORIGIN FOR THE GROUP (A): 43.8050 -26.9047 -33.7150 REMARK 3 T TENSOR REMARK 3 T11: 0.1501 T22: 0.3521 REMARK 3 T33: 0.1267 T12: -0.1031 REMARK 3 T13: 0.0659 T23: -0.0265 REMARK 3 L TENSOR REMARK 3 L11: 1.1606 L22: 3.8604 REMARK 3 L33: 0.8335 L12: -0.2325 REMARK 3 L13: 0.4583 L23: -1.6462 REMARK 3 S TENSOR REMARK 3 S11: -0.1904 S12: -0.0658 S13: 0.0444 REMARK 3 S21: -0.3804 S22: 0.2892 S23: -0.3259 REMARK 3 S31: 0.2280 S32: -0.1721 S33: -0.1110 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESSEQ 559:602 REMARK 3 ORIGIN FOR THE GROUP (A): 56.2241 -2.6138 -34.7014 REMARK 3 T TENSOR REMARK 3 T11: 0.2891 T22: 0.1450 REMARK 3 T33: 0.2818 T12: -0.0706 REMARK 3 T13: -0.0984 T23: 0.1250 REMARK 3 L TENSOR REMARK 3 L11: 1.1604 L22: 4.7072 REMARK 3 L33: 2.5396 L12: 2.1081 REMARK 3 L13: -0.6618 L23: -2.3505 REMARK 3 S TENSOR REMARK 3 S11: 0.0248 S12: -0.2539 S13: -0.2819 REMARK 3 S21: 0.4670 S22: -0.3152 S23: -1.1382 REMARK 3 S31: 0.0099 S32: -0.1113 S33: 0.2441 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN B AND RESSEQ 516:558) OR (CHAIN B AND RESSEQ REMARK 3 1) REMARK 3 ORIGIN FOR THE GROUP (A): 29.8398 -15.1919 -27.8990 REMARK 3 T TENSOR REMARK 3 T11: 0.1511 T22: 0.3554 REMARK 3 T33: 0.1086 T12: 0.0414 REMARK 3 T13: -0.0202 T23: 0.0930 REMARK 3 L TENSOR REMARK 3 L11: 2.7410 L22: 2.8482 REMARK 3 L33: 2.7591 L12: -0.2616 REMARK 3 L13: -2.1681 L23: 1.9239 REMARK 3 S TENSOR REMARK 3 S11: 0.0621 S12: 0.4517 S13: -0.1216 REMARK 3 S21: -0.2889 S22: -0.1413 S23: -0.2182 REMARK 3 S31: -0.4857 S32: -0.1000 S33: 0.1046 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND RESSEQ 559:604 REMARK 3 ORIGIN FOR THE GROUP (A): 40.8892 -11.8395 -2.7806 REMARK 3 T TENSOR REMARK 3 T11: 0.1417 T22: 0.1102 REMARK 3 T33: 0.1097 T12: 0.0511 REMARK 3 T13: -0.0232 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 1.4850 L22: 1.0131 REMARK 3 L33: 2.3307 L12: -0.8987 REMARK 3 L13: -0.1665 L23: -0.4550 REMARK 3 S TENSOR REMARK 3 S11: -0.0351 S12: 0.0617 S13: 0.0666 REMARK 3 S21: -0.0125 S22: -0.1240 S23: -0.0839 REMARK 3 S31: 0.0785 S32: -0.3280 S33: 0.1044 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN E REMARK 3 ORIGIN FOR THE GROUP (A): 36.3308 -21.5332 -33.9141 REMARK 3 T TENSOR REMARK 3 T11: 0.0785 T22: 0.2879 REMARK 3 T33: 0.1066 T12: -0.0009 REMARK 3 T13: 0.0140 T23: -0.0889 REMARK 3 L TENSOR REMARK 3 L11: 0.5001 L22: 5.3168 REMARK 3 L33: 0.8021 L12: 1.4546 REMARK 3 L13: 0.2726 L23: 1.2567 REMARK 3 S TENSOR REMARK 3 S11: 0.0669 S12: 0.1660 S13: -0.0924 REMARK 3 S21: -0.5742 S22: -0.3619 S23: -0.3670 REMARK 3 S31: -0.1873 S32: -0.4002 S33: 0.1649 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN F REMARK 3 ORIGIN FOR THE GROUP (A): 21.9467 -15.9345 -25.3542 REMARK 3 T TENSOR REMARK 3 T11: 0.2006 T22: 0.4100 REMARK 3 T33: 0.1810 T12: 0.0067 REMARK 3 T13: 0.0749 T23: 0.1432 REMARK 3 L TENSOR REMARK 3 L11: 2.2788 L22: 1.9203 REMARK 3 L33: 2.9604 L12: 0.8924 REMARK 3 L13: -1.1810 L23: -0.4109 REMARK 3 S TENSOR REMARK 3 S11: -0.1569 S12: 0.1562 S13: -0.1555 REMARK 3 S21: -0.3942 S22: 0.4693 S23: -0.2809 REMARK 3 S31: 0.0236 S32: -0.8629 S33: 0.0710 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (chain A and not (resseq 521:522 or REMARK 3 resseq 546:552 or resseq 558 or resseq REMARK 3 578:587 or resseq 592:594 or resseq 598: REMARK 3 604)) or chain C REMARK 3 SELECTION : (chain B and not (resseq 521:522 or REMARK 3 resseq 546:552 or resseq 558 or resseq REMARK 3 578:587 or resseq 592:594 or resseq 598: REMARK 3 604)) or chain D REMARK 3 ATOM PAIRS NUMBER : 493 REMARK 3 RMSD : 0.021 REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: chain E and resseq 260:267 and not REMARK 3 (resname HZP or resname HYP) REMARK 3 SELECTION : chain F and resseq 260:267 and not REMARK 3 (resname HZP or resname HYP) REMARK 3 ATOM PAIRS NUMBER : 47 REMARK 3 RMSD : 0.014 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE SF FILE CONTAINS FRIEDEL PAIRS REMARK 3 UNDER I/F_PLUS AND I/F_MINUS COLUMN. REMARK 4 REMARK 4 3GXE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052425. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : SILICON MONOCHROMATOR REMARK 200 OPTICS : CYLINDRICAL GRAZING INCIDENCE REMARK 200 MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.25 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16804 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.558 REMARK 200 RESOLUTION RANGE LOW (A) : 46.676 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : 0.07400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.44200 REMARK 200 R SYM FOR SHELL (I) : 0.44200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3EJH, CHAIN A AND PART OF CHAIN E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH 7.5, 4.3M NACL, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293.1K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.88700 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 101.77400 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 101.77400 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 50.88700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 612 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR B 605 REMARK 465 PRO B 606 REMARK 465 SER B 607 REMARK 465 SER B 608 REMARK 465 GLY F 254 REMARK 465 LEU F 255 REMARK 465 HZP F 256 REMARK 465 GLY F 257 REMARK 465 THR F 258 REMARK 465 ALA F 259 REMARK 465 SER F 271 REMARK 465 GLY F 272 REMARK 465 LEU F 273 REMARK 465 ASP F 274 REMARK 465 GLY F 275 REMARK 465 TYR F 276 REMARK 465 GLN A 603 REMARK 465 THR A 604 REMARK 465 TYR A 605 REMARK 465 PRO A 606 REMARK 465 SER A 607 REMARK 465 SER A 608 REMARK 465 HYP E 256 REMARK 465 GLY E 257 REMARK 465 THR E 258 REMARK 465 ALA E 259 REMARK 465 ASP E 274 REMARK 465 GLY E 275 REMARK 465 TYR E 276 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE B 594 24.78 -142.52 REMARK 500 ASP A 521 -128.38 61.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3EJH RELATED DB: PDB REMARK 900 STRUCTURE OF A HIGH AFFINITY COMPLEX BETWEEN 8-9FNI AND COLLAGEN DBREF 3GXE B 516 608 UNP P02751 FINC_HUMAN 516 608 DBREF 3GXE F 254 275 UNP P02452 CO1A1_HUMAN 254 275 DBREF 3GXE A 516 608 UNP P02751 FINC_HUMAN 516 608 DBREF 3GXE E 254 275 UNP P02452 CO1A1_HUMAN 254 275 SEQADV 3GXE GLN B 528 UNP P02751 ASN 528 ENGINEERED MUTATION SEQADV 3GXE LYS B 534 UNP P02751 ARG 534 ENGINEERED MUTATION SEQADV 3GXE TYR F 276 UNP P02452 EXPRESSION TAG SEQADV 3GXE GLN A 528 UNP P02751 ASN 528 ENGINEERED MUTATION SEQADV 3GXE LYS A 534 UNP P02751 ARG 534 ENGINEERED MUTATION SEQADV 3GXE TYR E 276 UNP P02452 EXPRESSION TAG SEQRES 1 B 93 ASP GLN CYS ILE VAL ASP ASP ILE THR TYR ASN VAL GLN SEQRES 2 B 93 ASP THR PHE HIS LYS LYS HIS GLU GLU GLY HIS MET LEU SEQRES 3 B 93 ASN CYS THR CYS PHE GLY GLN GLY ARG GLY ARG TRP LYS SEQRES 4 B 93 CYS ASP PRO VAL ASP GLN CYS GLN ASP SER GLU THR GLY SEQRES 5 B 93 THR PHE TYR GLN ILE GLY ASP SER TRP GLU LYS TYR VAL SEQRES 6 B 93 HIS GLY VAL ARG TYR GLN CYS TYR CYS TYR GLY ARG GLY SEQRES 7 B 93 ILE GLY GLU TRP HIS CYS GLN PRO LEU GLN THR TYR PRO SEQRES 8 B 93 SER SER SEQRES 1 F 23 GLY LEU HZP GLY THR ALA GLY LEU HZP GLY MET LYS GLY SEQRES 2 F 23 HIS ARG GLY PHE SER GLY LEU ASP GLY TYR SEQRES 1 A 93 ASP GLN CYS ILE VAL ASP ASP ILE THR TYR ASN VAL GLN SEQRES 2 A 93 ASP THR PHE HIS LYS LYS HIS GLU GLU GLY HIS MET LEU SEQRES 3 A 93 ASN CYS THR CYS PHE GLY GLN GLY ARG GLY ARG TRP LYS SEQRES 4 A 93 CYS ASP PRO VAL ASP GLN CYS GLN ASP SER GLU THR GLY SEQRES 5 A 93 THR PHE TYR GLN ILE GLY ASP SER TRP GLU LYS TYR VAL SEQRES 6 A 93 HIS GLY VAL ARG TYR GLN CYS TYR CYS TYR GLY ARG GLY SEQRES 7 A 93 ILE GLY GLU TRP HIS CYS GLN PRO LEU GLN THR TYR PRO SEQRES 8 A 93 SER SER SEQRES 1 E 23 GLY LEU HYP GLY THR ALA GLY LEU HYP GLY MET LYS GLY SEQRES 2 E 23 HIS ARG GLY PHE SER GLY LEU ASP GLY TYR MODRES 3GXE ASN B 542 ASN GLYCOSYLATION SITE MODRES 3GXE ASN A 542 ASN GLYCOSYLATION SITE MODRES 3GXE HZP F 262 PRO (4S)-4-HYDROXY-L-PROLINE MODRES 3GXE HYP E 262 PRO 4-HYDROXYPROLINE HET HZP F 262 8 HET HYP E 262 8 HET NAG B 1 14 HET NAG A 1 14 HET GOL A 609 6 HETNAM HZP (4S)-4-HYDROXY-L-PROLINE HETNAM HYP 4-HYDROXYPROLINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GOL GLYCEROL HETSYN HYP HYDROXYPROLINE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 HZP C5 H9 N O3 FORMUL 4 HYP C5 H9 N O3 FORMUL 5 NAG 2(C8 H15 N O6) FORMUL 7 GOL C3 H8 O3 FORMUL 8 HOH *44(H2 O) SHEET 1 A 2 GLN B 517 VAL B 520 0 SHEET 2 A 2 ILE B 523 ASN B 526 -1 O TYR B 525 N CYS B 518 SHEET 1 B 8 MET F 264 GLY F 266 0 SHEET 2 B 8 ARG B 552 PRO B 557 -1 N CYS B 555 O MET F 264 SHEET 3 B 8 MET B 540 GLY B 547 -1 N ASN B 542 O ASP B 556 SHEET 4 B 8 ASP B 529 LYS B 534 -1 N PHE B 531 O CYS B 543 SHEET 5 B 8 GLY E 263 GLY E 266 -1 O GLY E 263 N THR B 530 SHEET 6 B 8 ARG A 552 PRO A 557 -1 N CYS A 555 O MET E 264 SHEET 7 B 8 MET A 540 GLY A 547 -1 N ASN A 542 O ASP A 556 SHEET 8 B 8 THR A 530 LYS A 534 -1 N PHE A 531 O CYS A 543 SHEET 1 C 2 GLN B 560 GLN B 562 0 SHEET 2 C 2 PHE B 569 GLN B 571 -1 O TYR B 570 N CYS B 561 SHEET 1 D 3 SER B 575 VAL B 580 0 SHEET 2 D 3 VAL B 583 GLY B 591 -1 O CYS B 587 N TRP B 576 SHEET 3 D 3 GLU B 596 PRO B 601 -1 O GLN B 600 N GLN B 586 SHEET 1 E 2 GLN A 517 VAL A 520 0 SHEET 2 E 2 ILE A 523 ASN A 526 -1 O TYR A 525 N CYS A 518 SHEET 1 F 2 GLN A 560 GLN A 562 0 SHEET 2 F 2 PHE A 569 GLN A 571 -1 O TYR A 570 N CYS A 561 SHEET 1 G 3 SER A 575 VAL A 580 0 SHEET 2 G 3 VAL A 583 GLY A 591 -1 O CYS A 587 N TRP A 576 SHEET 3 G 3 GLU A 596 PRO A 601 -1 O GLU A 596 N TYR A 590 SSBOND 1 CYS B 518 CYS B 545 1555 1555 2.04 SSBOND 2 CYS B 543 CYS B 555 1555 1555 2.04 SSBOND 3 CYS B 561 CYS B 589 1555 1555 2.03 SSBOND 4 CYS B 587 CYS B 599 1555 1555 2.04 SSBOND 5 CYS A 518 CYS A 545 1555 1555 2.03 SSBOND 6 CYS A 543 CYS A 555 1555 1555 2.04 SSBOND 7 CYS A 561 CYS A 589 1555 1555 2.03 SSBOND 8 CYS A 587 CYS A 599 1555 1555 2.03 LINK C1 NAG B 1 ND2 ASN B 542 1555 1555 1.44 LINK C LEU F 261 N HZP F 262 1555 1555 1.33 LINK C HZP F 262 N GLY F 263 1555 1555 1.33 LINK C1 NAG A 1 ND2 ASN A 542 1555 1555 1.44 LINK C LEU E 261 N HYP E 262 1555 1555 1.33 LINK C HYP E 262 N GLY E 263 1555 1555 1.33 CRYST1 56.570 56.570 152.661 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017677 0.010206 0.000000 0.00000 SCALE2 0.000000 0.020412 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006550 0.00000 MTRIX1 1 0.994176 0.074947 0.077439 17.55670 1 MTRIX2 1 -0.081142 0.047680 0.995562 4.24073 1 MTRIX3 1 0.070922 -0.996047 0.053483 -49.60510 1 MTRIX1 2 0.994044 0.052047 0.095744 17.81750 1 MTRIX2 2 -0.096477 0.011747 0.995266 4.11278 1 MTRIX3 2 0.050676 -0.998576 0.016699 -49.96120 1