PDB Short entry for 3HTU HEADER PROTEIN TRANSPORT 12-JUN-09 3HTU TITLE CRYSTAL STRUCTURE OF THE HUMAN VPS25-VPS20 SUBCOMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: VACUOLAR PROTEIN-SORTING-ASSOCIATED PROTEIN 25; COMPND 3 CHAIN: A, C, E, G; COMPND 4 FRAGMENT: THE C-TERMINAL WH2 DOMAIN OF VPS25: UNP RESIDUES 102-176; COMPND 5 SYNONYM: HVPS25, ESCRT-II COMPLEX SUBUNIT VPS25, ELL-ASSOCIATED COMPND 6 PROTEIN OF 20 KDA, DERMAL PAPILLA-DERIVED PROTEIN 9; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: VACUOLAR PROTEIN-SORTING-ASSOCIATED PROTEIN 20; COMPND 10 CHAIN: B, D, F, H; COMPND 11 FRAGMENT: THE FIRST HELIX OF VPS20: UNP RESIDUES 11-48; COMPND 12 SYNONYM: CHROMATIN-MODIFYING PROTEIN 6, CHARGED MULTIVESICULAR BODY COMPND 13 PROTEIN 6, VPS20, HVPS20; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DERP9, EAP20, VPS25; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)STAR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PST39; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: CHMP6, VPS20; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)STAR; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PST39 KEYWDS ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, CYTOPLASM, NUCLEUS, KEYWDS 2 POLYMORPHISM, PROTEIN TRANSPORT, TRANSCRIPTION, TRANSCRIPTION KEYWDS 3 REGULATION, TRANSPORT, COILED COIL, ENDOSOME, LIPOPROTEIN, MEMBRANE, KEYWDS 4 MYRISTATE EXPDTA X-RAY DIFFRACTION AUTHOR Y.J.IM,J.H.HURLEY REVDAT 2 06-SEP-23 3HTU 1 SEQADV REVDAT 1 25-AUG-09 3HTU 0 JRNL AUTH Y.J.IM,T.WOLLERT,E.BOURA,J.H.HURLEY JRNL TITL STRUCTURE AND FUNCTION OF THE ESCRT-II-III INTERFACE IN JRNL TITL 2 MULTIVESICULAR BODY BIOGENESIS. JRNL REF DEV.CELL V. 17 234 2009 JRNL REFN ISSN 1534-5807 JRNL PMID 19686684 JRNL DOI 10.1016/J.DEVCEL.2009.07.008 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 28995 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.240 REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1544 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1843 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.2070 REMARK 3 BIN FREE R VALUE SET COUNT : 94 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3657 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 213 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.66000 REMARK 3 B22 (A**2) : 1.31000 REMARK 3 B33 (A**2) : -0.65000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.05000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.204 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.142 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.970 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3709 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4974 ; 1.288 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 431 ; 5.747 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 223 ;40.134 ;24.350 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 719 ;19.808 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 41 ;12.225 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 523 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2865 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1715 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2474 ; 0.294 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 215 ; 0.152 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 121 ; 0.219 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.179 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2240 ; 1.193 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3472 ; 1.957 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1658 ; 2.538 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1502 ; 3.647 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3HTU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053574. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30553 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 29.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.28100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.030 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3CUO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL PH 8.0, 35% PEG 4000, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.52150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -0.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 98 REMARK 465 ALA A 99 REMARK 465 MET A 100 REMARK 465 GLY A 101 REMARK 465 ARG B 45 REMARK 465 ALA B 46 REMARK 465 LEU B 47 REMARK 465 ALA B 48 REMARK 465 GLY C 98 REMARK 465 ALA C 99 REMARK 465 MET C 100 REMARK 465 GLY C 101 REMARK 465 ALA D 46 REMARK 465 LEU D 47 REMARK 465 ALA D 48 REMARK 465 GLY E 98 REMARK 465 ALA E 99 REMARK 465 MET E 100 REMARK 465 GLY E 101 REMARK 465 GLU F 42 REMARK 465 ARG F 43 REMARK 465 GLU F 44 REMARK 465 ARG F 45 REMARK 465 ALA F 46 REMARK 465 LEU F 47 REMARK 465 ALA F 48 REMARK 465 GLY G 98 REMARK 465 ALA G 99 REMARK 465 MET G 100 REMARK 465 GLY G 101 REMARK 465 ALA H 46 REMARK 465 LEU H 47 REMARK 465 ALA H 48 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 118 -82.58 92.31 REMARK 500 ASN C 122 -20.71 78.11 REMARK 500 ARG E 117 62.47 -107.77 REMARK 500 ASN G 132 -5.45 -143.86 REMARK 500 SER G 168 -102.26 21.60 REMARK 500 SER H 11 -46.29 -27.48 REMARK 500 REMARK 500 REMARK: NULL DBREF 3HTU A 102 176 UNP Q9BRG1 VPS25_HUMAN 102 176 DBREF 3HTU B 11 48 UNP Q96FZ7 CHMP6_HUMAN 11 48 DBREF 3HTU C 102 176 UNP Q9BRG1 VPS25_HUMAN 102 176 DBREF 3HTU D 11 48 UNP Q96FZ7 CHMP6_HUMAN 11 48 DBREF 3HTU E 102 176 UNP Q9BRG1 VPS25_HUMAN 102 176 DBREF 3HTU F 11 48 UNP Q96FZ7 CHMP6_HUMAN 11 48 DBREF 3HTU G 102 176 UNP Q9BRG1 VPS25_HUMAN 102 176 DBREF 3HTU H 11 48 UNP Q96FZ7 CHMP6_HUMAN 11 48 SEQADV 3HTU GLY A 98 UNP Q9BRG1 EXPRESSION TAG SEQADV 3HTU ALA A 99 UNP Q9BRG1 EXPRESSION TAG SEQADV 3HTU MET A 100 UNP Q9BRG1 EXPRESSION TAG SEQADV 3HTU GLY A 101 UNP Q9BRG1 EXPRESSION TAG SEQADV 3HTU GLY B 10 UNP Q96FZ7 EXPRESSION TAG SEQADV 3HTU GLY C 98 UNP Q9BRG1 EXPRESSION TAG SEQADV 3HTU ALA C 99 UNP Q9BRG1 EXPRESSION TAG SEQADV 3HTU MET C 100 UNP Q9BRG1 EXPRESSION TAG SEQADV 3HTU GLY C 101 UNP Q9BRG1 EXPRESSION TAG SEQADV 3HTU GLY D 10 UNP Q96FZ7 EXPRESSION TAG SEQADV 3HTU GLY E 98 UNP Q9BRG1 EXPRESSION TAG SEQADV 3HTU ALA E 99 UNP Q9BRG1 EXPRESSION TAG SEQADV 3HTU MET E 100 UNP Q9BRG1 EXPRESSION TAG SEQADV 3HTU GLY E 101 UNP Q9BRG1 EXPRESSION TAG SEQADV 3HTU GLY F 10 UNP Q96FZ7 EXPRESSION TAG SEQADV 3HTU GLY G 98 UNP Q9BRG1 EXPRESSION TAG SEQADV 3HTU ALA G 99 UNP Q9BRG1 EXPRESSION TAG SEQADV 3HTU MET G 100 UNP Q9BRG1 EXPRESSION TAG SEQADV 3HTU GLY G 101 UNP Q9BRG1 EXPRESSION TAG SEQADV 3HTU GLY H 10 UNP Q96FZ7 EXPRESSION TAG SEQRES 1 A 79 GLY ALA MET GLY ARG ARG PRO GLU GLU TRP GLY LYS LEU SEQRES 2 A 79 ILE TYR GLN TRP VAL SER ARG SER GLY GLN ASN ASN SER SEQRES 3 A 79 VAL PHE THR LEU TYR GLU LEU THR ASN GLY GLU ASP THR SEQRES 4 A 79 GLU ASP GLU GLU PHE HIS GLY LEU ASP GLU ALA THR LEU SEQRES 5 A 79 LEU ARG ALA LEU GLN ALA LEU GLN GLN GLU HIS LYS ALA SEQRES 6 A 79 GLU ILE ILE THR VAL SER ASP GLY ARG GLY VAL LYS PHE SEQRES 7 A 79 PHE SEQRES 1 B 39 GLY SER ARG VAL THR GLU GLN ASP LYS ALA ILE LEU GLN SEQRES 2 B 39 LEU LYS GLN GLN ARG ASP LYS LEU ARG GLN TYR GLN LYS SEQRES 3 B 39 ARG ILE ALA GLN GLN LEU GLU ARG GLU ARG ALA LEU ALA SEQRES 1 C 79 GLY ALA MET GLY ARG ARG PRO GLU GLU TRP GLY LYS LEU SEQRES 2 C 79 ILE TYR GLN TRP VAL SER ARG SER GLY GLN ASN ASN SER SEQRES 3 C 79 VAL PHE THR LEU TYR GLU LEU THR ASN GLY GLU ASP THR SEQRES 4 C 79 GLU ASP GLU GLU PHE HIS GLY LEU ASP GLU ALA THR LEU SEQRES 5 C 79 LEU ARG ALA LEU GLN ALA LEU GLN GLN GLU HIS LYS ALA SEQRES 6 C 79 GLU ILE ILE THR VAL SER ASP GLY ARG GLY VAL LYS PHE SEQRES 7 C 79 PHE SEQRES 1 D 39 GLY SER ARG VAL THR GLU GLN ASP LYS ALA ILE LEU GLN SEQRES 2 D 39 LEU LYS GLN GLN ARG ASP LYS LEU ARG GLN TYR GLN LYS SEQRES 3 D 39 ARG ILE ALA GLN GLN LEU GLU ARG GLU ARG ALA LEU ALA SEQRES 1 E 79 GLY ALA MET GLY ARG ARG PRO GLU GLU TRP GLY LYS LEU SEQRES 2 E 79 ILE TYR GLN TRP VAL SER ARG SER GLY GLN ASN ASN SER SEQRES 3 E 79 VAL PHE THR LEU TYR GLU LEU THR ASN GLY GLU ASP THR SEQRES 4 E 79 GLU ASP GLU GLU PHE HIS GLY LEU ASP GLU ALA THR LEU SEQRES 5 E 79 LEU ARG ALA LEU GLN ALA LEU GLN GLN GLU HIS LYS ALA SEQRES 6 E 79 GLU ILE ILE THR VAL SER ASP GLY ARG GLY VAL LYS PHE SEQRES 7 E 79 PHE SEQRES 1 F 39 GLY SER ARG VAL THR GLU GLN ASP LYS ALA ILE LEU GLN SEQRES 2 F 39 LEU LYS GLN GLN ARG ASP LYS LEU ARG GLN TYR GLN LYS SEQRES 3 F 39 ARG ILE ALA GLN GLN LEU GLU ARG GLU ARG ALA LEU ALA SEQRES 1 G 79 GLY ALA MET GLY ARG ARG PRO GLU GLU TRP GLY LYS LEU SEQRES 2 G 79 ILE TYR GLN TRP VAL SER ARG SER GLY GLN ASN ASN SER SEQRES 3 G 79 VAL PHE THR LEU TYR GLU LEU THR ASN GLY GLU ASP THR SEQRES 4 G 79 GLU ASP GLU GLU PHE HIS GLY LEU ASP GLU ALA THR LEU SEQRES 5 G 79 LEU ARG ALA LEU GLN ALA LEU GLN GLN GLU HIS LYS ALA SEQRES 6 G 79 GLU ILE ILE THR VAL SER ASP GLY ARG GLY VAL LYS PHE SEQRES 7 G 79 PHE SEQRES 1 H 39 GLY SER ARG VAL THR GLU GLN ASP LYS ALA ILE LEU GLN SEQRES 2 H 39 LEU LYS GLN GLN ARG ASP LYS LEU ARG GLN TYR GLN LYS SEQRES 3 H 39 ARG ILE ALA GLN GLN LEU GLU ARG GLU ARG ALA LEU ALA FORMUL 9 HOH *213(H2 O) HELIX 1 1 ARG A 103 ARG A 117 1 15 HELIX 2 2 THR A 126 GLY A 133 1 8 HELIX 3 3 ASP A 145 GLU A 159 1 15 HELIX 4 4 THR B 14 GLU B 44 1 31 HELIX 5 5 ARG C 103 GLY C 119 1 17 HELIX 6 6 LEU C 127 GLY C 133 1 7 HELIX 7 7 ASP C 145 GLN C 157 1 13 HELIX 8 8 THR D 14 ARG D 43 1 30 HELIX 9 9 ARG E 103 ARG E 117 1 15 HELIX 10 10 LEU E 127 GLY E 133 1 7 HELIX 11 11 GLU E 134 GLU E 137 5 4 HELIX 12 12 ASP E 145 GLU E 159 1 15 HELIX 13 13 THR F 14 LEU F 41 1 28 HELIX 14 14 ARG G 103 GLY G 119 1 17 HELIX 15 15 LEU G 127 GLY G 133 1 7 HELIX 16 16 ASP G 145 GLU G 159 1 15 HELIX 17 17 THR H 14 ARG H 45 1 32 SHEET 1 A 3 VAL A 124 PHE A 125 0 SHEET 2 A 3 GLY A 172 PHE A 175 -1 O VAL A 173 N PHE A 125 SHEET 3 A 3 ALA A 162 ILE A 165 -1 N ILE A 165 O GLY A 172 SHEET 1 B 3 VAL C 124 THR C 126 0 SHEET 2 B 3 GLY C 170 PHE C 175 -1 O VAL C 173 N PHE C 125 SHEET 3 B 3 ALA C 162 VAL C 167 -1 N VAL C 167 O GLY C 170 SHEET 1 C 3 VAL E 124 THR E 126 0 SHEET 2 C 3 GLY E 170 PHE E 175 -1 O VAL E 173 N PHE E 125 SHEET 3 C 3 ALA E 162 VAL E 167 -1 N ILE E 165 O GLY E 172 SHEET 1 D 3 VAL G 124 THR G 126 0 SHEET 2 D 3 ARG G 171 PHE G 175 -1 O VAL G 173 N PHE G 125 SHEET 3 D 3 ALA G 162 THR G 166 -1 N GLU G 163 O LYS G 174 CRYST1 58.562 51.043 76.987 90.00 90.39 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017076 0.000000 0.000115 0.00000 SCALE2 0.000000 0.019591 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012989 0.00000