PDB Short entry for 4I5K HEADER HYDROLASE 28-NOV-12 4I5K TITLE PP2A PR70 HOLOENZYME MODEL3_DICA_RCSB.PDB BPPNAT5_EXTEND.MTZ COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT COMPND 3 B'' SUBUNIT ALPHA; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: PR72; COMPND 6 SYNONYM: PP2A SUBUNIT B ISOFORM PR72/PR130, PP2A SUBUNIT B ISOFORM R3 COMPND 7 ISOFORM, PP2A SUBUNIT B ISOFORMS B''-PR72/PR130, PP2A SUBUNIT B COMPND 8 ISOFORMS B72/B130, SERINE/THREONINE-PROTEIN PHOSPHATASE 2A 72/130 KDA COMPND 9 REGULATORY SUBUNIT B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PPP2R3A, PPP2R3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET 15B KEYWDS EF HAND, PHOSPHATASE REGULATORY SUBUNIT, PP2A, CYTOPASMIC, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.XING,P.D.JEFFREY,Y.SHI REVDAT 4 28-FEB-24 4I5K 1 REMARK LINK REVDAT 3 17-JUL-19 4I5K 1 REMARK REVDAT 2 24-JUL-13 4I5K 1 JRNL REVDAT 1 08-MAY-13 4I5K 0 JRNL AUTH N.WLODARCHAK,F.GUO,K.A.SATYSHUR,L.JIANG,P.D.JEFFREY,T.SUN, JRNL AUTH 2 V.STANEVICH,M.C.MUMBY,Y.XING JRNL TITL STRUCTURE OF THE CA(2+)-DEPENDENT PP2A HETEROTRIMER AND JRNL TITL 2 INSIGHTS INTO CDC6 DEPHOSPHORYLATION. JRNL REF CELL RES. V. 23 931 2013 JRNL REFN ISSN 1001-0602 JRNL PMID 23752926 JRNL DOI 10.1038/CR.2013.77 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 20215 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1036 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.9290 - 5.5412 1.00 2784 159 0.2099 0.2569 REMARK 3 2 5.5412 - 4.4010 1.00 2759 148 0.2049 0.2575 REMARK 3 3 4.4010 - 3.8454 1.00 2759 143 0.1884 0.2461 REMARK 3 4 3.8454 - 3.4942 1.00 2715 150 0.1945 0.2368 REMARK 3 5 3.4942 - 3.2439 1.00 2752 144 0.2065 0.2559 REMARK 3 6 3.2439 - 3.0528 1.00 2715 140 0.2355 0.2846 REMARK 3 7 3.0528 - 2.9000 0.98 2695 152 0.2604 0.3210 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 77.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 4579 REMARK 3 ANGLE : 0.890 6221 REMARK 3 CHIRALITY : 0.059 656 REMARK 3 PLANARITY : 0.003 796 REMARK 3 DIHEDRAL : 13.567 1674 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 172 THROUGH 289 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.1846 -13.2597 38.1146 REMARK 3 T TENSOR REMARK 3 T11: 0.3216 T22: 0.3123 REMARK 3 T33: 0.2335 T12: 0.0341 REMARK 3 T13: -0.0377 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 0.2869 L22: 0.1999 REMARK 3 L33: 0.1615 L12: 0.1445 REMARK 3 L13: 0.0908 L23: -0.1249 REMARK 3 S TENSOR REMARK 3 S11: -0.0810 S12: -0.0665 S13: 0.0100 REMARK 3 S21: -0.1740 S22: 0.0652 S23: -0.1403 REMARK 3 S31: 0.3486 S32: -0.1385 S33: 0.0008 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 290 THROUGH 372 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.6184 0.5737 20.7641 REMARK 3 T TENSOR REMARK 3 T11: 0.3131 T22: 0.2351 REMARK 3 T33: 0.1973 T12: -0.0796 REMARK 3 T13: -0.0177 T23: -0.0163 REMARK 3 L TENSOR REMARK 3 L11: 0.0481 L22: 0.3085 REMARK 3 L33: 0.4067 L12: -0.0721 REMARK 3 L13: -0.0534 L23: -0.1654 REMARK 3 S TENSOR REMARK 3 S11: -0.1061 S12: 0.2238 S13: 0.0478 REMARK 3 S21: -0.3678 S22: 0.1952 S23: -0.1190 REMARK 3 S31: 0.0570 S32: -0.4170 S33: 0.0664 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 373 THROUGH 443 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.5797 13.2402 19.6405 REMARK 3 T TENSOR REMARK 3 T11: 0.2785 T22: 0.0363 REMARK 3 T33: 0.8245 T12: -0.3636 REMARK 3 T13: 0.3248 T23: 0.0082 REMARK 3 L TENSOR REMARK 3 L11: 0.0621 L22: 0.1421 REMARK 3 L33: 0.1918 L12: 0.0096 REMARK 3 L13: -0.0413 L23: 0.1291 REMARK 3 S TENSOR REMARK 3 S11: 0.2114 S12: -0.0351 S13: 0.2077 REMARK 3 S21: -0.3883 S22: 0.2158 S23: -0.1855 REMARK 3 S31: -0.2831 S32: 0.0230 S33: 0.6017 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 172 THROUGH 289 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.3782 -8.6291 55.2113 REMARK 3 T TENSOR REMARK 3 T11: 0.2736 T22: 0.5772 REMARK 3 T33: 0.6018 T12: 0.0183 REMARK 3 T13: -0.0272 T23: -0.2116 REMARK 3 L TENSOR REMARK 3 L11: 0.1838 L22: 0.1127 REMARK 3 L33: 0.7694 L12: 0.0996 REMARK 3 L13: 0.2813 L23: -0.0248 REMARK 3 S TENSOR REMARK 3 S11: 0.1054 S12: -0.4828 S13: -0.0424 REMARK 3 S21: -0.0231 S22: 0.2437 S23: -0.8305 REMARK 3 S31: 0.2761 S32: 0.5462 S33: 0.2483 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 290 THROUGH 372 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.9901 8.7285 66.0097 REMARK 3 T TENSOR REMARK 3 T11: 0.3565 T22: 0.6277 REMARK 3 T33: 0.4911 T12: -0.1176 REMARK 3 T13: 0.0704 T23: -0.1903 REMARK 3 L TENSOR REMARK 3 L11: 0.0172 L22: 0.1042 REMARK 3 L33: 0.0151 L12: 0.0237 REMARK 3 L13: -0.0050 L23: -0.0582 REMARK 3 S TENSOR REMARK 3 S11: 0.0120 S12: 0.0048 S13: -0.2960 REMARK 3 S21: -0.0899 S22: 0.1274 S23: -0.5940 REMARK 3 S31: -0.2030 S32: 0.5906 S33: -0.0018 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 373 THROUGH 443 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3985 16.6997 60.9359 REMARK 3 T TENSOR REMARK 3 T11: 0.6890 T22: 0.4704 REMARK 3 T33: 0.4403 T12: -0.0320 REMARK 3 T13: 0.0733 T23: -0.1308 REMARK 3 L TENSOR REMARK 3 L11: 0.0818 L22: 0.0703 REMARK 3 L33: 0.0330 L12: -0.0739 REMARK 3 L13: 0.0470 L23: -0.0370 REMARK 3 S TENSOR REMARK 3 S11: 0.2248 S12: 0.0938 S13: -0.0086 REMARK 3 S21: -0.2260 S22: 0.0140 S23: 0.1068 REMARK 3 S31: -0.5978 S32: 0.0573 S33: 0.0095 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4I5K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000076331. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-SEP-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.10 REMARK 200 MONOCHROMATOR : SI(111) MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20230 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.60900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50:50 (0.1 M NAH2PO4/0.1 M K2HPO4, 0.1 REMARK 280 M MES, 2 M NACL) 8 MG/ML PROTEIN , PH 6.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 66.40600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.54300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 66.40600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 54.54300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 165 REMARK 465 TRP A 166 REMARK 465 ARG A 167 REMARK 465 LYS A 168 REMARK 465 LEU A 169 REMARK 465 LEU A 170 REMARK 465 ASN A 171 REMARK 465 ARG A 325 REMARK 465 GLY A 326 REMARK 465 LYS A 327 REMARK 465 THR A 328 REMARK 465 ILE A 329 REMARK 465 GLN A 330 REMARK 465 GLU A 444 REMARK 465 GLN A 445 REMARK 465 ARG A 446 REMARK 465 ASP A 447 REMARK 465 PRO A 448 REMARK 465 PHE A 449 REMARK 465 MET B 165 REMARK 465 TRP B 166 REMARK 465 ARG B 167 REMARK 465 LYS B 168 REMARK 465 LEU B 169 REMARK 465 LEU B 170 REMARK 465 ASN B 171 REMARK 465 ARG B 325 REMARK 465 GLY B 326 REMARK 465 LYS B 327 REMARK 465 THR B 328 REMARK 465 ILE B 329 REMARK 465 GLN B 330 REMARK 465 GLU B 444 REMARK 465 GLN B 445 REMARK 465 ARG B 446 REMARK 465 ASP B 447 REMARK 465 PRO B 448 REMARK 465 PHE B 449 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 290 OD1 ASP B 294 1.77 REMARK 500 OH TYR B 380 O LEU B 395 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 423 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 273 -56.28 69.24 REMARK 500 ASP A 290 70.56 -68.32 REMARK 500 ALA A 309 -94.90 -51.39 REMARK 500 ALA A 411 -74.00 -84.41 REMARK 500 ASP A 442 43.41 -82.75 REMARK 500 THR B 207 53.36 -101.29 REMARK 500 PRO B 218 14.77 -69.58 REMARK 500 TRP B 240 18.13 56.24 REMARK 500 TYR B 273 -55.23 69.82 REMARK 500 PRO B 410 -178.28 -67.38 REMARK 500 PHE B 435 11.20 -142.78 REMARK 500 ASP B 442 46.57 -82.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 290 OD1 REMARK 620 2 ASP A 292 OD2 120.9 REMARK 620 3 ASP A 294 OD1 80.4 104.0 REMARK 620 4 TYR A 296 O 82.2 155.2 87.6 REMARK 620 5 ASP A 301 OD2 113.6 76.3 163.9 86.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 364 OD1 REMARK 620 2 ASP A 366 OD1 70.0 REMARK 620 3 ASP A 368 OD1 71.9 69.9 REMARK 620 4 ASP A 368 OD2 112.5 65.1 46.9 REMARK 620 5 VAL A 370 O 92.4 137.6 68.0 89.0 REMARK 620 6 GLU A 375 OE1 117.5 129.6 159.6 129.9 92.8 REMARK 620 7 GLU A 375 OE2 91.8 75.2 144.7 120.4 145.7 55.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 290 OD1 REMARK 620 2 ASP B 292 OD2 93.4 REMARK 620 3 ASP B 294 OD1 42.4 79.9 REMARK 620 4 ASP B 294 OD2 92.7 83.5 51.4 REMARK 620 5 TYR B 296 O 70.3 141.6 64.5 63.6 REMARK 620 6 ASP B 301 OD2 134.1 102.5 176.3 131.4 113.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 364 OD1 REMARK 620 2 ASP B 366 OD1 73.3 REMARK 620 3 ASP B 366 OD2 116.5 44.3 REMARK 620 4 ASP B 368 OD1 72.6 72.5 94.9 REMARK 620 5 ASP B 368 OD2 114.9 70.1 60.7 46.0 REMARK 620 6 VAL B 370 O 86.2 138.8 146.4 67.3 87.9 REMARK 620 7 GLU B 375 OE1 111.5 132.1 104.0 155.3 133.0 88.4 REMARK 620 8 GLU B 375 OE2 87.1 79.5 73.3 149.1 133.9 135.8 54.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4I5J RELATED DB: PDB REMARK 900 RELATED ID: 4I5L RELATED DB: PDB REMARK 900 RELATED ID: 4I5N RELATED DB: PDB DBREF 4I5K A 165 449 UNP Q06190 P2R3A_HUMAN 786 1070 DBREF 4I5K B 165 449 UNP Q06190 P2R3A_HUMAN 786 1070 SEQRES 1 A 285 MET TRP ARG LYS LEU LEU ASN ASN HIS HIS ASP ASP ALA SEQRES 2 A 285 SER LYS PHE ILE CYS LEU LEU ALA LYS PRO ASN CYS SER SEQRES 3 A 285 SER LEU GLU GLN GLU ASP PHE ILE PRO LEU LEU GLN ASP SEQRES 4 A 285 VAL VAL ASP THR HIS PRO GLY LEU THR PHE LEU LYS ASP SEQRES 5 A 285 ALA PRO GLU PHE HIS SER ARG TYR ILE THR THR VAL ILE SEQRES 6 A 285 GLN ARG ILE PHE TYR THR VAL ASN ARG SER TRP SER GLY SEQRES 7 A 285 LYS ILE THR SER THR GLU ILE ARG LYS SER ASN PHE LEU SEQRES 8 A 285 GLN THR LEU ALA LEU LEU GLU GLU GLU GLU ASP ILE ASN SEQRES 9 A 285 GLN ILE THR ASP TYR PHE SER TYR GLU HIS PHE TYR VAL SEQRES 10 A 285 ILE TYR CYS LYS PHE TRP GLU LEU ASP THR ASP HIS ASP SEQRES 11 A 285 LEU TYR ILE SER GLN ALA ASP LEU SER ARG TYR ASN ASP SEQRES 12 A 285 GLN ALA SER SER SER ARG ILE ILE GLU ARG ILE PHE SER SEQRES 13 A 285 GLY ALA VAL THR ARG GLY LYS THR ILE GLN LYS GLU GLY SEQRES 14 A 285 ARG MET SER TYR ALA ASP PHE VAL TRP PHE LEU ILE SER SEQRES 15 A 285 GLU GLU ASP LYS ARG ASN PRO THR SER ILE GLU TYR TRP SEQRES 16 A 285 PHE ARG CYS MET ASP VAL ASP GLY ASP GLY VAL LEU SER SEQRES 17 A 285 MET TYR GLU LEU GLU TYR PHE TYR GLU GLU GLN CYS GLU SEQRES 18 A 285 ARG MET GLU ALA MET GLY ILE GLU PRO LEU PRO PHE HIS SEQRES 19 A 285 ASP LEU LEU CYS GLN MET LEU ASP LEU VAL LYS PRO ALA SEQRES 20 A 285 VAL ASP GLY LYS ILE THR LEU ARG ASP LEU LYS ARG CYS SEQRES 21 A 285 ARG MET ALA HIS ILE PHE TYR ASP THR PHE PHE ASN LEU SEQRES 22 A 285 GLU LYS TYR LEU ASP HIS GLU GLN ARG ASP PRO PHE SEQRES 1 B 285 MET TRP ARG LYS LEU LEU ASN ASN HIS HIS ASP ASP ALA SEQRES 2 B 285 SER LYS PHE ILE CYS LEU LEU ALA LYS PRO ASN CYS SER SEQRES 3 B 285 SER LEU GLU GLN GLU ASP PHE ILE PRO LEU LEU GLN ASP SEQRES 4 B 285 VAL VAL ASP THR HIS PRO GLY LEU THR PHE LEU LYS ASP SEQRES 5 B 285 ALA PRO GLU PHE HIS SER ARG TYR ILE THR THR VAL ILE SEQRES 6 B 285 GLN ARG ILE PHE TYR THR VAL ASN ARG SER TRP SER GLY SEQRES 7 B 285 LYS ILE THR SER THR GLU ILE ARG LYS SER ASN PHE LEU SEQRES 8 B 285 GLN THR LEU ALA LEU LEU GLU GLU GLU GLU ASP ILE ASN SEQRES 9 B 285 GLN ILE THR ASP TYR PHE SER TYR GLU HIS PHE TYR VAL SEQRES 10 B 285 ILE TYR CYS LYS PHE TRP GLU LEU ASP THR ASP HIS ASP SEQRES 11 B 285 LEU TYR ILE SER GLN ALA ASP LEU SER ARG TYR ASN ASP SEQRES 12 B 285 GLN ALA SER SER SER ARG ILE ILE GLU ARG ILE PHE SER SEQRES 13 B 285 GLY ALA VAL THR ARG GLY LYS THR ILE GLN LYS GLU GLY SEQRES 14 B 285 ARG MET SER TYR ALA ASP PHE VAL TRP PHE LEU ILE SER SEQRES 15 B 285 GLU GLU ASP LYS ARG ASN PRO THR SER ILE GLU TYR TRP SEQRES 16 B 285 PHE ARG CYS MET ASP VAL ASP GLY ASP GLY VAL LEU SER SEQRES 17 B 285 MET TYR GLU LEU GLU TYR PHE TYR GLU GLU GLN CYS GLU SEQRES 18 B 285 ARG MET GLU ALA MET GLY ILE GLU PRO LEU PRO PHE HIS SEQRES 19 B 285 ASP LEU LEU CYS GLN MET LEU ASP LEU VAL LYS PRO ALA SEQRES 20 B 285 VAL ASP GLY LYS ILE THR LEU ARG ASP LEU LYS ARG CYS SEQRES 21 B 285 ARG MET ALA HIS ILE PHE TYR ASP THR PHE PHE ASN LEU SEQRES 22 B 285 GLU LYS TYR LEU ASP HIS GLU GLN ARG ASP PRO PHE HET CA A 501 1 HET CA A 502 1 HET CA B 501 1 HET CA B 502 1 HETNAM CA CALCIUM ION FORMUL 3 CA 4(CA 2+) HELIX 1 1 ASP A 175 ALA A 185 1 11 HELIX 2 2 GLU A 193 ASP A 196 5 4 HELIX 3 3 PHE A 197 HIS A 208 1 12 HELIX 4 4 LEU A 211 LYS A 215 5 5 HELIX 5 5 PHE A 220 ASN A 237 1 18 HELIX 6 6 THR A 245 LYS A 251 1 7 HELIX 7 7 ASN A 253 GLU A 262 1 10 HELIX 8 8 ASP A 266 ILE A 270 5 5 HELIX 9 9 SER A 275 ASP A 290 1 16 HELIX 10 10 GLN A 299 ASN A 306 1 8 HELIX 11 11 SER A 311 PHE A 319 1 9 HELIX 12 12 SER A 336 ASP A 349 1 14 HELIX 13 13 ASN A 352 ASP A 364 1 13 HELIX 14 14 SER A 372 ALA A 389 1 18 HELIX 15 15 PRO A 396 LYS A 409 1 14 HELIX 16 16 LEU A 418 ARG A 425 1 8 HELIX 17 17 MET A 426 ASN A 436 1 11 HELIX 18 18 ASN A 436 ASP A 442 1 7 HELIX 19 19 ASP B 175 ALA B 185 1 11 HELIX 20 20 GLU B 193 ASP B 196 5 4 HELIX 21 21 PHE B 197 THR B 207 1 11 HELIX 22 22 LEU B 211 LYS B 215 5 5 HELIX 23 23 PHE B 220 ASN B 237 1 18 HELIX 24 24 THR B 245 LYS B 251 1 7 HELIX 25 25 ASN B 253 GLU B 262 1 10 HELIX 26 26 ASP B 266 ILE B 270 5 5 HELIX 27 27 SER B 275 ASP B 290 1 16 HELIX 28 28 GLN B 299 ARG B 304 1 6 HELIX 29 29 TYR B 305 GLN B 308 5 4 HELIX 30 30 SER B 311 PHE B 319 1 9 HELIX 31 31 SER B 336 ASP B 349 1 14 HELIX 32 32 ASN B 352 ASP B 364 1 13 HELIX 33 33 SER B 372 ALA B 389 1 18 HELIX 34 34 PRO B 396 LYS B 409 1 14 HELIX 35 35 THR B 417 CYS B 424 1 8 HELIX 36 36 MET B 426 ASN B 436 1 11 HELIX 37 37 ASN B 436 ASP B 442 1 7 SHEET 1 A 2 ILE A 297 SER A 298 0 SHEET 2 A 2 ARG A 334 MET A 335 -1 O MET A 335 N ILE A 297 SHEET 1 B 2 VAL A 370 LEU A 371 0 SHEET 2 B 2 ILE A 416 THR A 417 -1 O ILE A 416 N LEU A 371 SHEET 1 C 2 ILE B 297 SER B 298 0 SHEET 2 C 2 ARG B 334 MET B 335 -1 O MET B 335 N ILE B 297 LINK OD1 ASP A 290 CA CA A 501 1555 1555 2.19 LINK OD2 ASP A 292 CA CA A 501 1555 1555 2.27 LINK OD1 ASP A 294 CA CA A 501 1555 1555 2.12 LINK O TYR A 296 CA CA A 501 1555 1555 2.27 LINK OD2 ASP A 301 CA CA A 501 1555 1555 2.34 LINK OD1 ASP A 364 CA CA A 502 1555 1555 2.38 LINK OD1 ASP A 366 CA CA A 502 1555 1555 2.44 LINK OD1 ASP A 368 CA CA A 502 1555 1555 2.35 LINK OD2 ASP A 368 CA CA A 502 1555 1555 2.97 LINK O VAL A 370 CA CA A 502 1555 1555 2.05 LINK OE1 GLU A 375 CA CA A 502 1555 1555 2.35 LINK OE2 GLU A 375 CA CA A 502 1555 1555 2.40 LINK OD1 ASP B 290 CA CA B 501 1555 1555 2.49 LINK OD2 ASP B 292 CA CA B 501 1555 1555 2.55 LINK OD1 ASP B 294 CA CA B 501 1555 1555 2.40 LINK OD2 ASP B 294 CA CA B 501 1555 1555 2.59 LINK O TYR B 296 CA CA B 501 1555 1555 2.45 LINK OD2 ASP B 301 CA CA B 501 1555 1555 2.69 LINK OD1 ASP B 364 CA CA B 502 1555 1555 2.34 LINK OD1 ASP B 366 CA CA B 502 1555 1555 2.32 LINK OD2 ASP B 366 CA CA B 502 1555 1555 3.14 LINK OD1 ASP B 368 CA CA B 502 1555 1555 2.36 LINK OD2 ASP B 368 CA CA B 502 1555 1555 3.02 LINK O VAL B 370 CA CA B 502 1555 1555 2.30 LINK OE1 GLU B 375 CA CA B 502 1555 1555 2.39 LINK OE2 GLU B 375 CA CA B 502 1555 1555 2.45 SITE 1 AC1 5 ASP A 290 ASP A 292 ASP A 294 TYR A 296 SITE 2 AC1 5 ASP A 301 SITE 1 AC2 5 ASP A 364 ASP A 366 ASP A 368 VAL A 370 SITE 2 AC2 5 GLU A 375 SITE 1 AC3 5 ASP B 290 ASP B 292 ASP B 294 TYR B 296 SITE 2 AC3 5 ASP B 301 SITE 1 AC4 5 ASP B 364 ASP B 366 ASP B 368 VAL B 370 SITE 2 AC4 5 GLU B 375 CRYST1 132.812 109.086 67.651 90.00 109.05 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007529 0.000000 0.002599 0.00000 SCALE2 0.000000 0.009167 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015638 0.00000