PDB Short entry for 5JKC HEADER CELL ADHESION 26-APR-16 5JKC TITLE CRYSTAL STRUCTURE OF HUMAN IZUMO1-JUNO COMPLEX (CRYSTAL FORM 1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: IZUMO SPERM-EGG FUSION PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 22-255; COMPND 5 SYNONYM: OOCYTE BINDING/FUSION FACTOR,OBF,SPERM-SPECIFIC PROTEIN COMPND 6 IZUMO; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: SPERM-EGG FUSION PROTEIN JUNO; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: UNP RESIDUES 20-228; COMPND 12 SYNONYM: FOLATE RECEPTOR 4,FOLATE RECEPTOR DELTA,FR-DELTA,IZUMO1 COMPND 13 RECEPTOR PROTEIN JUNO; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IZUMO1; SOURCE 6 EXPRESSION_SYSTEM: DROSOPHILA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7215; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: IZUMO1R, FOLR4, JUNO; SOURCE 13 EXPRESSION_SYSTEM: DROSOPHILA; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 7215 KEYWDS FERTILIZATION, IZUMO1, JUNO, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR U.OHTO,H.ISHIDA,T.SHIMIZU REVDAT 5 08-NOV-23 5JKC 1 HETSYN REVDAT 4 29-JUL-20 5JKC 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 19-FEB-20 5JKC 1 JRNL REMARK REVDAT 2 29-JUN-16 5JKC 1 JRNL REVDAT 1 22-JUN-16 5JKC 0 JRNL AUTH U.OHTO,H.ISHIDA,E.KRAYUKHINA,S.UCHIYAMA,N.INOUE,T.SHIMIZU JRNL TITL STRUCTURE OF IZUMO1-JUNO REVEALS SPERM-OOCYTE RECOGNITION JRNL TITL 2 DURING MAMMALIAN FERTILIZATION JRNL REF NATURE V. 534 566 2016 JRNL REFN ESSN 1476-4687 JRNL PMID 27309808 JRNL DOI 10.1038/NATURE18596 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 14419 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 787 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1023 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.3820 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.4230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3488 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 5 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 105.1 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.73000 REMARK 3 B22 (A**2) : 2.42000 REMARK 3 B33 (A**2) : -3.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 2.175 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.379 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.379 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 46.739 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3630 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3310 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4931 ; 1.648 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7664 ; 1.037 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 430 ; 6.926 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 169 ;35.139 ;24.320 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 607 ;17.106 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;15.512 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 514 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4046 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 838 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1732 ; 3.159 ; 7.616 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1731 ; 3.159 ; 7.614 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2158 ; 5.247 ;11.412 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2159 ; 5.246 ;11.414 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1897 ; 3.101 ; 7.981 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1898 ; 3.100 ; 7.982 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2774 ; 5.291 ;11.837 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 14953 ;11.361 ;71.988 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 14954 ;11.360 ;71.991 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 18 A 254 REMARK 3 ORIGIN FOR THE GROUP (A): 1.8710 -35.9115 22.3744 REMARK 3 T TENSOR REMARK 3 T11: 0.2640 T22: 0.2132 REMARK 3 T33: 0.2449 T12: -0.1103 REMARK 3 T13: -0.0879 T23: -0.0316 REMARK 3 L TENSOR REMARK 3 L11: 0.5547 L22: 3.8942 REMARK 3 L33: 0.6651 L12: 0.6152 REMARK 3 L13: -0.5085 L23: 0.1078 REMARK 3 S TENSOR REMARK 3 S11: 0.0108 S12: -0.1785 S13: -0.1936 REMARK 3 S21: -0.1607 S22: -0.3148 S23: -0.0822 REMARK 3 S31: -0.0965 S32: 0.0906 S33: 0.3040 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 18 B 230 REMARK 3 ORIGIN FOR THE GROUP (A): -22.1270 -25.9117 7.8949 REMARK 3 T TENSOR REMARK 3 T11: 0.0116 T22: 0.4286 REMARK 3 T33: 0.1980 T12: 0.0440 REMARK 3 T13: -0.0215 T23: -0.1509 REMARK 3 L TENSOR REMARK 3 L11: 3.1830 L22: 2.3602 REMARK 3 L33: 1.3799 L12: -1.6166 REMARK 3 L13: 0.9568 L23: -0.7380 REMARK 3 S TENSOR REMARK 3 S11: -0.0985 S12: -0.3097 S13: -0.0802 REMARK 3 S21: 0.1264 S22: 0.0030 S23: 0.0076 REMARK 3 S31: -0.1021 S32: -0.6582 S33: 0.0954 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5JKC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220777. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NE3A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15228 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 34.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5JK9, 5JKA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8-12% PEG4000, 0.2 M LI2SO4, 0.1 M MES REMARK 280 -NAOH PH 6.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.94000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.94000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 32.59400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 72.37500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 32.59400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 72.37500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 70.94000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 32.59400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 72.37500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 70.94000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 32.59400 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 72.37500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 68 REMARK 465 LEU A 69 REMARK 465 ASN A 70 REMARK 465 GLU A 71 REMARK 465 LYS A 255 REMARK 465 GLU A 256 REMARK 465 PHE A 257 REMARK 465 LEU A 258 REMARK 465 GLU A 259 REMARK 465 VAL A 260 REMARK 465 LEU A 261 REMARK 465 PHE A 262 REMARK 465 GLN A 263 REMARK 465 ARG B 16 REMARK 465 SER B 17 REMARK 465 GLY B 111 REMARK 465 SER B 112 REMARK 465 LEU B 113 REMARK 465 GLY B 114 REMARK 465 TRP B 115 REMARK 465 GLU B 116 REMARK 465 VAL B 117 REMARK 465 ALA B 118 REMARK 465 PRO B 119 REMARK 465 SER B 120 REMARK 465 GLY B 121 REMARK 465 GLN B 122 REMARK 465 LEU B 231 REMARK 465 GLU B 232 REMARK 465 VAL B 233 REMARK 465 LEU B 234 REMARK 465 PHE B 235 REMARK 465 GLN B 236 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU B 63 OG SER B 69 1.55 REMARK 500 O ASP A 63 NZ LYS A 119 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 152 19.29 54.25 REMARK 500 SER A 162 139.10 -35.62 REMARK 500 MET A 175 -3.08 72.07 REMARK 500 THR A 194 -96.96 -114.29 REMARK 500 ASN A 239 -169.32 -74.32 REMARK 500 GLU B 45 -109.48 39.73 REMARK 500 ASN B 53 99.02 -168.20 REMARK 500 HIS B 78 -33.58 -29.33 REMARK 500 LEU B 81 129.44 -37.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5JKE RELATED DB: PDB REMARK 900 RELATED ID: 5JKD RELATED DB: PDB REMARK 900 RELATED ID: 5JKB RELATED DB: PDB REMARK 900 RELATED ID: 5JKA RELATED DB: PDB REMARK 900 RELATED ID: 5JK9 RELATED DB: PDB DBREF 5JKC A 22 255 UNP Q8IYV9 IZUM1_HUMAN 22 255 DBREF 5JKC B 20 228 UNP A6ND01 JUNO_HUMAN 20 228 SEQADV 5JKC ARG A 18 UNP Q8IYV9 EXPRESSION TAG SEQADV 5JKC SER A 19 UNP Q8IYV9 EXPRESSION TAG SEQADV 5JKC PRO A 20 UNP Q8IYV9 EXPRESSION TAG SEQADV 5JKC TRP A 21 UNP Q8IYV9 EXPRESSION TAG SEQADV 5JKC GLU A 256 UNP Q8IYV9 EXPRESSION TAG SEQADV 5JKC PHE A 257 UNP Q8IYV9 EXPRESSION TAG SEQADV 5JKC LEU A 258 UNP Q8IYV9 EXPRESSION TAG SEQADV 5JKC GLU A 259 UNP Q8IYV9 EXPRESSION TAG SEQADV 5JKC VAL A 260 UNP Q8IYV9 EXPRESSION TAG SEQADV 5JKC LEU A 261 UNP Q8IYV9 EXPRESSION TAG SEQADV 5JKC PHE A 262 UNP Q8IYV9 EXPRESSION TAG SEQADV 5JKC GLN A 263 UNP Q8IYV9 EXPRESSION TAG SEQADV 5JKC ARG B 16 UNP A6ND01 EXPRESSION TAG SEQADV 5JKC SER B 17 UNP A6ND01 EXPRESSION TAG SEQADV 5JKC PRO B 18 UNP A6ND01 EXPRESSION TAG SEQADV 5JKC TRP B 19 UNP A6ND01 EXPRESSION TAG SEQADV 5JKC GLU B 229 UNP A6ND01 EXPRESSION TAG SEQADV 5JKC PHE B 230 UNP A6ND01 EXPRESSION TAG SEQADV 5JKC LEU B 231 UNP A6ND01 EXPRESSION TAG SEQADV 5JKC GLU B 232 UNP A6ND01 EXPRESSION TAG SEQADV 5JKC VAL B 233 UNP A6ND01 EXPRESSION TAG SEQADV 5JKC LEU B 234 UNP A6ND01 EXPRESSION TAG SEQADV 5JKC PHE B 235 UNP A6ND01 EXPRESSION TAG SEQADV 5JKC GLN B 236 UNP A6ND01 EXPRESSION TAG SEQRES 1 A 246 ARG SER PRO TRP CYS VAL ILE CYS ASP PRO SER VAL VAL SEQRES 2 A 246 LEU ALA LEU LYS SER LEU GLU LYS ASP TYR LEU PRO GLY SEQRES 3 A 246 HIS LEU ASP ALA LYS HIS HIS LYS ALA MET MET GLU ARG SEQRES 4 A 246 VAL GLU ASN ALA VAL LYS ASP PHE GLN GLU LEU SER LEU SEQRES 5 A 246 ASN GLU ASP ALA TYR MET GLY VAL VAL ASP GLU ALA THR SEQRES 6 A 246 LEU GLN LYS GLY SER TRP SER LEU LEU LYS ASP LEU LYS SEQRES 7 A 246 ARG ILE THR ASP SER ASP VAL LYS GLY ASP LEU PHE VAL SEQRES 8 A 246 LYS GLU LEU PHE TRP MET LEU HIS LEU GLN LYS GLU THR SEQRES 9 A 246 PHE ALA THR TYR VAL ALA ARG PHE GLN LYS GLU ALA TYR SEQRES 10 A 246 CYS PRO ASN LYS CYS GLY VAL MET LEU GLN THR LEU ILE SEQRES 11 A 246 TRP CYS LYS ASN CYS LYS LYS GLU VAL HIS ALA CYS ARG SEQRES 12 A 246 LYS SER TYR ASP CYS GLY GLU ARG ASN VAL GLU VAL PRO SEQRES 13 A 246 GLN MET GLU ASP MET ILE LEU ASP CYS GLU LEU ASN TRP SEQRES 14 A 246 HIS GLN ALA SER GLU GLY LEU THR ASP TYR SER PHE TYR SEQRES 15 A 246 ARG VAL TRP GLY ASN ASN THR GLU THR LEU VAL SER LYS SEQRES 16 A 246 GLY LYS GLU ALA THR LEU THR LYS PRO MET VAL GLY PRO SEQRES 17 A 246 GLU ASP ALA GLY SER TYR ARG CYS GLU LEU GLY SER VAL SEQRES 18 A 246 ASN SER SER PRO ALA THR ILE ILE ASN PHE HIS VAL THR SEQRES 19 A 246 VAL LEU PRO LYS GLU PHE LEU GLU VAL LEU PHE GLN SEQRES 1 B 221 ARG SER PRO TRP GLY ASP GLU LEU LEU ASN ILE CYS MET SEQRES 2 B 221 ASN ALA LYS HIS HIS LYS ARG VAL PRO SER PRO GLU ASP SEQRES 3 B 221 LYS LEU TYR GLU GLU CYS ILE PRO TRP LYS ASP ASN ALA SEQRES 4 B 221 CYS CYS THR LEU THR THR SER TRP GLU ALA HIS LEU ASP SEQRES 5 B 221 VAL SER PRO LEU TYR ASN PHE SER LEU PHE HIS CYS GLY SEQRES 6 B 221 LEU LEU MET PRO GLY CYS ARG LYS HIS PHE ILE GLN ALA SEQRES 7 B 221 ILE CYS PHE TYR GLU CYS SER PRO ASN LEU GLY PRO TRP SEQRES 8 B 221 ILE GLN PRO VAL GLY SER LEU GLY TRP GLU VAL ALA PRO SEQRES 9 B 221 SER GLY GLN GLY GLU ARG VAL VAL ASN VAL PRO LEU CYS SEQRES 10 B 221 GLN GLU ASP CYS GLU GLU TRP TRP GLU ASP CYS ARG MET SEQRES 11 B 221 SER TYR THR CYS LYS SER ASN TRP ARG GLY GLY TRP ASP SEQRES 12 B 221 TRP SER GLN GLY LYS ASN ARG CYS PRO LYS GLY ALA GLN SEQRES 13 B 221 CYS LEU PRO PHE SER HIS TYR PHE PRO THR PRO ALA ASP SEQRES 14 B 221 LEU CYS GLU LYS THR TRP SER ASN SER PHE LYS ALA SER SEQRES 15 B 221 PRO GLU ARG ARG ASN SER GLY ARG CYS LEU GLN LYS TRP SEQRES 16 B 221 PHE GLU PRO ALA GLN GLY ASN PRO ASN VAL ALA VAL ALA SEQRES 17 B 221 ARG LEU PHE ALA SER GLU PHE LEU GLU VAL LEU PHE GLN HET NAG A 300 14 HET NAG B 301 14 HET CL B 302 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CL CHLORIDE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 5 CL CL 1- FORMUL 6 HOH *5(H2 O) HELIX 1 AA1 TRP A 21 CYS A 25 5 5 HELIX 2 AA2 ASP A 26 TYR A 40 1 15 HELIX 3 AA3 TYR A 40 LEU A 45 1 6 HELIX 4 AA4 ASP A 46 LYS A 48 5 3 HELIX 5 AA5 HIS A 49 ASP A 63 1 15 HELIX 6 AA6 ASP A 79 SER A 100 1 22 HELIX 7 AA7 LYS A 103 ALA A 133 1 31 HELIX 8 AA8 LEU A 184 SER A 190 5 7 HELIX 9 AA9 GLY A 224 ALA A 228 5 5 HELIX 10 AB1 GLY B 20 LEU B 24 5 5 HELIX 11 AB2 TYR B 44 LYS B 51 5 8 HELIX 12 AB3 THR B 57 HIS B 65 1 9 HELIX 13 AB4 LEU B 76 GLY B 80 5 5 HELIX 14 AB5 MET B 83 SER B 100 1 18 HELIX 15 AB6 LEU B 103 PRO B 105 5 3 HELIX 16 AB7 CYS B 132 ARG B 144 1 13 HELIX 17 AB8 PHE B 175 PHE B 179 1 5 HELIX 18 AB9 THR B 181 THR B 189 1 9 HELIX 19 AC1 GLU B 212 GLY B 216 5 5 HELIX 20 AC2 ASN B 219 GLU B 229 1 11 SHEET 1 AA1 3 VAL A 77 VAL A 78 0 SHEET 2 AA1 3 VAL A 141 TRP A 148 -1 O ILE A 147 N VAL A 78 SHEET 3 AA1 3 LYS A 154 ARG A 160 -1 O CYS A 159 N MET A 142 SHEET 1 AA2 5 ARG A 168 PRO A 173 0 SHEET 2 AA2 5 THR A 244 LEU A 253 1 O HIS A 249 N ARG A 168 SHEET 3 AA2 5 GLY A 229 SER A 237 -1 N CYS A 233 O ILE A 246 SHEET 4 AA2 5 LEU A 193 VAL A 201 -1 N SER A 197 O GLU A 234 SHEET 5 AA2 5 GLU A 207 GLY A 213 -1 O GLY A 213 N TYR A 196 SHEET 1 AA3 2 MET A 178 ASP A 181 0 SHEET 2 AA3 2 THR A 217 LYS A 220 -1 O LEU A 218 N LEU A 180 SHEET 1 AA4 2 ILE B 107 GLN B 108 0 SHEET 2 AA4 2 ARG B 125 VAL B 126 -1 O ARG B 125 N GLN B 108 SHEET 1 AA5 2 VAL B 129 LEU B 131 0 SHEET 2 AA5 2 PHE B 194 ALA B 196 1 O LYS B 195 N VAL B 129 SHEET 1 AA6 2 TYR B 147 THR B 148 0 SHEET 2 AA6 2 LEU B 173 PRO B 174 -1 O LEU B 173 N THR B 148 SSBOND 1 CYS A 22 CYS A 149 1555 1555 2.02 SSBOND 2 CYS A 25 CYS A 152 1555 1555 2.05 SSBOND 3 CYS A 135 CYS A 159 1555 1555 2.04 SSBOND 4 CYS A 139 CYS A 165 1555 1555 2.05 SSBOND 5 CYS A 182 CYS A 233 1555 1555 2.03 SSBOND 6 CYS B 27 CYS B 55 1555 1555 2.04 SSBOND 7 CYS B 47 CYS B 95 1555 1555 2.05 SSBOND 8 CYS B 56 CYS B 99 1555 1555 2.02 SSBOND 9 CYS B 79 CYS B 172 1555 1555 2.06 SSBOND 10 CYS B 86 CYS B 143 1555 1555 2.03 SSBOND 11 CYS B 132 CYS B 206 1555 1555 2.05 SSBOND 12 CYS B 136 CYS B 186 1555 1555 2.02 SSBOND 13 CYS B 149 CYS B 166 1555 1555 2.04 LINK ND2 ASN A 204 C1 NAG A 300 1555 1555 1.44 LINK ND2 ASN B 73 C1 NAG B 301 1555 1555 1.44 CRYST1 65.188 144.750 141.880 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015340 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006908 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007048 0.00000