PDB Short entry for 5OQK HEADER PROTON TRANSPORT 12-AUG-17 5OQK TITLE SOLUTION NMR STRUCTURE OF TRUNCATED, HUMAN HV1/VSOP (VOLTAGE-GATED TITLE 2 PROTON CHANNEL) COMPND MOL_ID: 1; COMPND 2 MOLECULE: VOLTAGE-GATED HYDROGEN CHANNEL 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 82-226; COMPND 5 SYNONYM: HYDROGEN VOLTAGE-GATED CHANNEL 1,HV1,VOLTAGE SENSOR DOMAIN- COMPND 6 ONLY PROTEIN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HVCN1, VSOP, UNQ578/PRO1140; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: C43; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET-28A KEYWDS VOLTAGE GATED PROTON CHANNEL, ANTI-PARALLEL FOUR-HELIX BUNDLE, KEYWDS 2 MEMBRANE PROTEIN, PROTON TRANSPORT EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR M.BAYRHUBER,I.MASLENNIKOV,W.KWIATOWSKI,A.SOBOL,C.WIERSCHEM, AUTHOR 2 C.EICHMANN,R.RIEK REVDAT 4 14-JUN-23 5OQK 1 REMARK REVDAT 3 13-NOV-19 5OQK 1 JRNL REVDAT 2 06-NOV-19 5OQK 1 JRNL REMARK REVDAT 1 03-APR-19 5OQK 0 JRNL AUTH M.BAYRHUBER,I.MASLENNIKOV,W.KWIATKOWSKI,A.SOBOL,C.WIERSCHEM, JRNL AUTH 2 C.EICHMANN,L.FREY,R.RIEK JRNL TITL NUCLEAR MAGNETIC RESONANCE SOLUTION STRUCTURE AND FUNCTIONAL JRNL TITL 2 BEHAVIOR OF THE HUMAN PROTON CHANNEL. JRNL REF BIOCHEMISTRY V. 58 4017 2019 JRNL REFN ISSN 0006-2960 JRNL PMID 31365236 JRNL DOI 10.1021/ACS.BIOCHEM.9B00471 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5OQK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1200006181. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 5.8 REMARK 210 IONIC STRENGTH : 30 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.4 MM [U-99% 13C; U-99% 15N; REMARK 210 50% 2H] HV1/VSOP, 20 MM MES, 20 REMARK 210 MM BISTRIS, 2 MM FC-12, 2 MM REMARK 210 LDAO, 1 MM TCEP, 10 MM ZNCL2, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCA; 3D HNCO; 3D HNCACB; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 83 61.29 -173.68 REMARK 500 1 LEU A 86 -38.64 -159.02 REMARK 500 1 ARG A 100 39.48 -95.37 REMARK 500 1 ILE A 127 -61.77 72.79 REMARK 500 1 LYS A 131 -71.88 -142.90 REMARK 500 1 ASN A 132 71.84 51.73 REMARK 500 1 ASN A 133 -77.67 179.59 REMARK 500 1 PHE A 161 -71.27 -124.85 REMARK 500 1 ARG A 162 93.42 63.07 REMARK 500 1 GLU A 164 -170.67 54.20 REMARK 500 1 HIS A 193 -50.40 -179.37 REMARK 500 1 GLN A 194 161.66 62.94 REMARK 500 1 PHE A 195 70.46 51.23 REMARK 500 1 GLU A 196 -34.54 179.61 REMARK 500 1 ARG A 208 -71.55 -58.97 REMARK 500 1 SER A 224 177.85 -56.84 REMARK 500 2 ARG A 83 65.08 -173.99 REMARK 500 2 LEU A 86 -37.88 -170.47 REMARK 500 2 ILE A 104 -74.35 -69.07 REMARK 500 2 ILE A 126 100.29 61.21 REMARK 500 2 PRO A 129 79.36 -69.76 REMARK 500 2 ASP A 130 121.56 -179.12 REMARK 500 2 ASN A 133 -70.28 179.34 REMARK 500 2 PHE A 161 -74.39 -51.96 REMARK 500 2 ARG A 162 177.27 58.68 REMARK 500 2 GLU A 164 170.83 -52.76 REMARK 500 2 HIS A 168 174.18 -54.63 REMARK 500 2 GLU A 192 -166.00 61.07 REMARK 500 2 GLN A 194 -178.93 58.89 REMARK 500 2 PHE A 195 -61.41 74.07 REMARK 500 2 GLU A 196 36.09 -91.29 REMARK 500 3 MET A 82 -38.20 -176.48 REMARK 500 3 PRO A 85 -177.17 -69.75 REMARK 500 3 LEU A 86 -37.80 -169.55 REMARK 500 3 ARG A 100 -75.39 69.27 REMARK 500 3 ILE A 126 96.29 61.23 REMARK 500 3 PRO A 129 89.34 -69.79 REMARK 500 3 ASN A 132 85.28 59.28 REMARK 500 3 ASN A 133 -169.61 -179.34 REMARK 500 3 PHE A 161 -61.98 -103.43 REMARK 500 3 GLN A 191 -174.90 -59.57 REMARK 500 3 GLN A 194 124.79 66.47 REMARK 500 3 PHE A 195 -59.83 74.51 REMARK 500 3 LEU A 206 -70.98 -56.50 REMARK 500 3 ARG A 208 -74.89 -62.50 REMARK 500 4 MET A 82 52.14 -145.88 REMARK 500 4 ALA A 84 75.08 57.88 REMARK 500 4 LEU A 86 -40.21 -149.14 REMARK 500 4 HIS A 99 64.64 -151.72 REMARK 500 4 ILE A 127 -70.25 70.56 REMARK 500 REMARK 500 THIS ENTRY HAS 149 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34169 RELATED DB: BMRB REMARK 900 SOLUTION NMR STRUCTURE OF TRUNCATED, HUMAN HV1/VSOP (VOLTAGE-GATED REMARK 900 PROTON CHANNEL) DBREF 5OQK A 83 226 UNP Q96D96 HVCN1_HUMAN 83 226 SEQADV 5OQK SER A 80 UNP Q96D96 EXPRESSION TAG SEQADV 5OQK HIS A 81 UNP Q96D96 EXPRESSION TAG SEQADV 5OQK MET A 82 UNP Q96D96 EXPRESSION TAG SEQRES 1 A 147 SER HIS MET ARG ALA PRO LEU ASP PHE ARG GLY MET LEU SEQRES 2 A 147 ARG LYS LEU PHE SER SER HIS ARG PHE GLN VAL ILE ILE SEQRES 3 A 147 ILE CYS LEU VAL VAL LEU ASP ALA LEU LEU VAL LEU ALA SEQRES 4 A 147 GLU LEU ILE LEU ASP LEU LYS ILE ILE GLN PRO ASP LYS SEQRES 5 A 147 ASN ASN TYR ALA ALA MET VAL PHE HIS TYR MET SER ILE SEQRES 6 A 147 THR ILE LEU VAL PHE PHE MET MET GLU ILE ILE PHE LYS SEQRES 7 A 147 LEU PHE VAL PHE ARG LEU GLU PHE PHE HIS HIS LYS PHE SEQRES 8 A 147 GLU ILE LEU ASP ALA VAL VAL VAL VAL VAL SER PHE ILE SEQRES 9 A 147 LEU ASP ILE VAL LEU LEU PHE GLN GLU HIS GLN PHE GLU SEQRES 10 A 147 ALA LEU GLY LEU LEU ILE LEU LEU ARG LEU TRP ARG VAL SEQRES 11 A 147 ALA ARG ILE ILE ASN GLY ILE ILE ILE SER VAL LYS THR SEQRES 12 A 147 ARG SER GLU ARG HELIX 1 AA1 LEU A 86 ARG A 100 1 15 HELIX 2 AA2 ARG A 100 LYS A 125 1 26 HELIX 3 AA3 ASN A 133 LEU A 158 1 26 HELIX 4 AA4 HIS A 168 PHE A 190 1 23 HELIX 5 AA5 GLU A 196 SER A 224 1 29 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000