PDB Short entry for 6DO5 HEADER LIGASE 08-JUN-18 6DO5 TITLE KLHDC2 UBIQUITIN LIGASE IN COMPLEX WITH USP1 C-END DEGRON COMPND MOL_ID: 1; COMPND 2 MOLECULE: KELCH DOMAIN-CONTAINING PROTEIN 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN 33,HOST CELL COMPND 5 FACTOR HOMOLOG LCP,HOST CELL FACTOR-LIKE PROTEIN 1,HCLP-1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: USP1 C-END DEGRON; COMPND 9 CHAIN: D, C; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KLHDC2, HCA33; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606 KEYWDS KELCH REPEAT, BETA-PROPELLER, DEGRON, COMPLEX, SUBSTRATE RECEPTOR, KEYWDS 2 E3, UBIQUITIN LIGASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR D.V.RUSNAC,H.C.LIN,H.C.S.YEN,N.ZHENG REVDAT 4 11-OCT-23 6DO5 1 REMARK REVDAT 3 20-NOV-19 6DO5 1 REMARK REVDAT 2 26-DEC-18 6DO5 1 JRNL REVDAT 1 19-DEC-18 6DO5 0 JRNL AUTH D.V.RUSNAC,H.C.LIN,D.CANZANI,K.X.TIEN,T.R.HINDS,A.F.TSUE, JRNL AUTH 2 M.F.BUSH,H.S.YEN,N.ZHENG JRNL TITL RECOGNITION OF THE DIGLYCINE C-END DEGRON BY JRNL TITL 2 CRL2KLHDC2UBIQUITIN LIGASE. JRNL REF MOL. CELL V. 72 813 2018 JRNL REFN ISSN 1097-4164 JRNL PMID 30526872 JRNL DOI 10.1016/J.MOLCEL.2018.10.021 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 22666 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.170 REMARK 3 FREE R VALUE TEST SET COUNT : 1399 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.0732 - 5.3830 1.00 2167 145 0.2080 0.2543 REMARK 3 2 5.3830 - 4.2739 1.00 2159 140 0.1847 0.2247 REMARK 3 3 4.2739 - 3.7340 1.00 2116 138 0.1876 0.2351 REMARK 3 4 3.7340 - 3.3927 1.00 2115 140 0.1933 0.2321 REMARK 3 5 3.3927 - 3.1496 1.00 2136 140 0.2021 0.2512 REMARK 3 6 3.1496 - 2.9640 1.00 2103 135 0.1999 0.2760 REMARK 3 7 2.9640 - 2.8156 1.00 2129 143 0.2140 0.2896 REMARK 3 8 2.8156 - 2.6930 1.00 2129 140 0.2144 0.2619 REMARK 3 9 2.6930 - 2.5894 1.00 2090 138 0.2222 0.3103 REMARK 3 10 2.5894 - 2.5000 1.00 2123 140 0.2157 0.2927 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.870 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.82 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 5259 REMARK 3 ANGLE : 1.303 7151 REMARK 3 CHIRALITY : 0.077 735 REMARK 3 PLANARITY : 0.006 913 REMARK 3 DIHEDRAL : 14.003 1797 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6DO5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1000235050. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32634 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.11900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.52700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2VPJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.03M MGCL2*6H2O, 0.03M CACL2*2H2O, REMARK 280 0.05M IMIDAZOLE, 0.05M MES MONOHYDRATE, 12.5% V/V MPD, 12.5% REMARK 280 PEG1000, 12.5% W/V PEG3350, PH 6.5., VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.54300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 GLY A 4 REMARK 465 ASN A 5 REMARK 465 GLU A 6 REMARK 465 ASP A 7 REMARK 465 LEU A 8 REMARK 465 ARG A 9 REMARK 465 ALA A 10 REMARK 465 ASP A 11 REMARK 465 ASP A 12 REMARK 465 LEU A 13 REMARK 465 PRO A 14 REMARK 465 GLY A 15 REMARK 465 PRO A 16 REMARK 465 ALA A 17 REMARK 465 PHE A 18 REMARK 465 GLU A 19 REMARK 465 SER A 20 REMARK 465 TYR A 21 REMARK 465 GLU A 22 REMARK 465 SER A 23 REMARK 465 MET A 24 REMARK 465 GLU A 25 REMARK 465 LEU A 26 REMARK 465 ASN A 53 REMARK 465 GLN A 54 REMARK 465 VAL A 55 REMARK 465 ARG A 56 REMARK 465 GLY A 57 REMARK 465 LEU A 58 REMARK 465 TYR A 59 REMARK 465 ASP A 60 REMARK 465 THR A 126 REMARK 465 ASP A 127 REMARK 465 GLU A 168 REMARK 465 ASP A 169 REMARK 465 ASN A 184 REMARK 465 SER A 185 REMARK 465 GLN A 360 REMARK 465 PRO A 361 REMARK 465 LYS A 362 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ASP B 3 REMARK 465 GLY B 4 REMARK 465 ASN B 5 REMARK 465 GLU B 6 REMARK 465 ASP B 7 REMARK 465 LEU B 8 REMARK 465 ARG B 9 REMARK 465 ALA B 10 REMARK 465 ASP B 11 REMARK 465 ASP B 12 REMARK 465 LEU B 13 REMARK 465 PRO B 14 REMARK 465 GLY B 15 REMARK 465 PRO B 16 REMARK 465 ALA B 17 REMARK 465 PHE B 18 REMARK 465 GLU B 19 REMARK 465 SER B 20 REMARK 465 TYR B 21 REMARK 465 GLU B 22 REMARK 465 SER B 23 REMARK 465 MET B 24 REMARK 465 GLU B 25 REMARK 465 LEU B 26 REMARK 465 ASN B 53 REMARK 465 GLN B 54 REMARK 465 VAL B 55 REMARK 465 ARG B 56 REMARK 465 GLY B 57 REMARK 465 LEU B 58 REMARK 465 TYR B 59 REMARK 465 ASP B 60 REMARK 465 GLU B 74 REMARK 465 SER B 125 REMARK 465 THR B 126 REMARK 465 ASP B 127 REMARK 465 GLU B 168 REMARK 465 ASP B 169 REMARK 465 ASN B 184 REMARK 465 SER B 185 REMARK 465 SER B 186 REMARK 465 GLN B 360 REMARK 465 PRO B 361 REMARK 465 LYS B 362 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 61 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 77 NE CZ NH1 NH2 REMARK 470 ARG A 128 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 129 CG1 CG2 REMARK 470 GLU A 133 CG CD OE1 OE2 REMARK 470 LYS A 170 CG CD CE NZ REMARK 470 SER A 186 OG REMARK 470 GLN A 261 CG CD OE1 NE2 REMARK 470 GLU A 329 CG CD OE1 OE2 REMARK 470 HIS A 345 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 347 CG CD NE CZ NH1 NH2 REMARK 470 PHE B 61 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG B 77 NE CZ NH1 NH2 REMARK 470 ARG B 128 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 133 CG CD OE1 OE2 REMARK 470 LYS B 170 CG CD CE NZ REMARK 470 GLU B 179 CG CD OE1 OE2 REMARK 470 HIS B 187 CG ND1 CD2 CE1 NE2 REMARK 470 GLN B 261 CG CD OE1 NE2 REMARK 470 THR B 315 OG1 CG2 REMARK 470 GLU B 329 CG CD OE1 OE2 REMARK 470 HIS B 345 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 347 CG CD NE CZ NH1 NH2 REMARK 470 ILE D 666 CG1 CG2 CD1 REMARK 470 ILE C 666 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 458 O HOH B 459 2.17 REMARK 500 NH2 ARG B 189 O ILE D 666 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 238 OE1 GLU B 176 21657 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 35 -175.18 -69.58 REMARK 500 ARG A 42 -44.88 -133.06 REMARK 500 GLU A 84 -162.63 -124.43 REMARK 500 LEU A 148 -156.67 -112.08 REMARK 500 LYS A 154 -121.10 56.28 REMARK 500 ARG A 238 -114.80 50.23 REMARK 500 LYS A 317 70.41 -118.09 REMARK 500 ASN A 340 -164.53 -125.16 REMARK 500 CYS B 28 120.69 -171.92 REMARK 500 GLU B 84 -163.13 -118.50 REMARK 500 ARG B 101 18.50 53.00 REMARK 500 HIS B 110 -167.45 -123.48 REMARK 500 LEU B 148 -159.76 -114.46 REMARK 500 LYS B 154 -127.04 58.73 REMARK 500 TYR B 237 118.90 -162.19 REMARK 500 ARG B 238 -117.55 58.97 REMARK 500 LYS B 317 79.17 -118.75 REMARK 500 ASN B 341 92.49 -67.27 REMARK 500 REMARK 500 REMARK: NULL DBREF 6DO5 A 1 362 UNP Q9Y2U9 KLDC2_HUMAN 1 362 DBREF 6DO5 B 1 362 UNP Q9Y2U9 KLDC2_HUMAN 1 362 DBREF 6DO5 D 666 671 PDB 6DO5 6DO5 666 671 DBREF 6DO5 C 666 671 PDB 6DO5 6DO5 666 671 SEQADV 6DO5 SER A 0 UNP Q9Y2U9 EXPRESSION TAG SEQADV 6DO5 SER B 0 UNP Q9Y2U9 EXPRESSION TAG SEQRES 1 A 363 SER MET ALA ASP GLY ASN GLU ASP LEU ARG ALA ASP ASP SEQRES 2 A 363 LEU PRO GLY PRO ALA PHE GLU SER TYR GLU SER MET GLU SEQRES 3 A 363 LEU ALA CYS PRO ALA GLU ARG SER GLY HIS VAL ALA VAL SEQRES 4 A 363 SER ASP GLY ARG HIS MET PHE VAL TRP GLY GLY TYR LYS SEQRES 5 A 363 SER ASN GLN VAL ARG GLY LEU TYR ASP PHE TYR LEU PRO SEQRES 6 A 363 ARG GLU GLU LEU TRP ILE TYR ASN MET GLU THR GLY ARG SEQRES 7 A 363 TRP LYS LYS ILE ASN THR GLU GLY ASP VAL PRO PRO SER SEQRES 8 A 363 MET SER GLY SER CYS ALA VAL CYS VAL ASP ARG VAL LEU SEQRES 9 A 363 TYR LEU PHE GLY GLY HIS HIS SER ARG GLY ASN THR ASN SEQRES 10 A 363 LYS PHE TYR MET LEU ASP SER ARG SER THR ASP ARG VAL SEQRES 11 A 363 LEU GLN TRP GLU ARG ILE ASP CYS GLN GLY ILE PRO PRO SEQRES 12 A 363 SER SER LYS ASP LYS LEU GLY VAL TRP VAL TYR LYS ASN SEQRES 13 A 363 LYS LEU ILE PHE PHE GLY GLY TYR GLY TYR LEU PRO GLU SEQRES 14 A 363 ASP LYS VAL LEU GLY THR PHE GLU PHE ASP GLU THR SER SEQRES 15 A 363 PHE TRP ASN SER SER HIS PRO ARG GLY TRP ASN ASP HIS SEQRES 16 A 363 VAL HIS ILE LEU ASP THR GLU THR PHE THR TRP SER GLN SEQRES 17 A 363 PRO ILE THR THR GLY LYS ALA PRO SER PRO ARG ALA ALA SEQRES 18 A 363 HIS ALA CYS ALA THR VAL GLY ASN ARG GLY PHE VAL PHE SEQRES 19 A 363 GLY GLY ARG TYR ARG ASP ALA ARG MET ASN ASP LEU HIS SEQRES 20 A 363 TYR LEU ASN LEU ASP THR TRP GLU TRP ASN GLU LEU ILE SEQRES 21 A 363 PRO GLN GLY ILE CYS PRO VAL GLY ARG SER TRP HIS SER SEQRES 22 A 363 LEU THR PRO VAL SER SER ASP HIS LEU PHE LEU PHE GLY SEQRES 23 A 363 GLY PHE THR THR ASP LYS GLN PRO LEU SER ASP ALA TRP SEQRES 24 A 363 THR TYR CYS ILE SER LYS ASN GLU TRP ILE GLN PHE ASN SEQRES 25 A 363 HIS PRO TYR THR GLU LYS PRO ARG LEU TRP HIS THR ALA SEQRES 26 A 363 CYS ALA SER ASP GLU GLY GLU VAL ILE VAL PHE GLY GLY SEQRES 27 A 363 CYS ALA ASN ASN LEU LEU VAL HIS HIS ARG ALA ALA HIS SEQRES 28 A 363 SER ASN GLU ILE LEU ILE PHE SER VAL GLN PRO LYS SEQRES 1 B 363 SER MET ALA ASP GLY ASN GLU ASP LEU ARG ALA ASP ASP SEQRES 2 B 363 LEU PRO GLY PRO ALA PHE GLU SER TYR GLU SER MET GLU SEQRES 3 B 363 LEU ALA CYS PRO ALA GLU ARG SER GLY HIS VAL ALA VAL SEQRES 4 B 363 SER ASP GLY ARG HIS MET PHE VAL TRP GLY GLY TYR LYS SEQRES 5 B 363 SER ASN GLN VAL ARG GLY LEU TYR ASP PHE TYR LEU PRO SEQRES 6 B 363 ARG GLU GLU LEU TRP ILE TYR ASN MET GLU THR GLY ARG SEQRES 7 B 363 TRP LYS LYS ILE ASN THR GLU GLY ASP VAL PRO PRO SER SEQRES 8 B 363 MET SER GLY SER CYS ALA VAL CYS VAL ASP ARG VAL LEU SEQRES 9 B 363 TYR LEU PHE GLY GLY HIS HIS SER ARG GLY ASN THR ASN SEQRES 10 B 363 LYS PHE TYR MET LEU ASP SER ARG SER THR ASP ARG VAL SEQRES 11 B 363 LEU GLN TRP GLU ARG ILE ASP CYS GLN GLY ILE PRO PRO SEQRES 12 B 363 SER SER LYS ASP LYS LEU GLY VAL TRP VAL TYR LYS ASN SEQRES 13 B 363 LYS LEU ILE PHE PHE GLY GLY TYR GLY TYR LEU PRO GLU SEQRES 14 B 363 ASP LYS VAL LEU GLY THR PHE GLU PHE ASP GLU THR SER SEQRES 15 B 363 PHE TRP ASN SER SER HIS PRO ARG GLY TRP ASN ASP HIS SEQRES 16 B 363 VAL HIS ILE LEU ASP THR GLU THR PHE THR TRP SER GLN SEQRES 17 B 363 PRO ILE THR THR GLY LYS ALA PRO SER PRO ARG ALA ALA SEQRES 18 B 363 HIS ALA CYS ALA THR VAL GLY ASN ARG GLY PHE VAL PHE SEQRES 19 B 363 GLY GLY ARG TYR ARG ASP ALA ARG MET ASN ASP LEU HIS SEQRES 20 B 363 TYR LEU ASN LEU ASP THR TRP GLU TRP ASN GLU LEU ILE SEQRES 21 B 363 PRO GLN GLY ILE CYS PRO VAL GLY ARG SER TRP HIS SER SEQRES 22 B 363 LEU THR PRO VAL SER SER ASP HIS LEU PHE LEU PHE GLY SEQRES 23 B 363 GLY PHE THR THR ASP LYS GLN PRO LEU SER ASP ALA TRP SEQRES 24 B 363 THR TYR CYS ILE SER LYS ASN GLU TRP ILE GLN PHE ASN SEQRES 25 B 363 HIS PRO TYR THR GLU LYS PRO ARG LEU TRP HIS THR ALA SEQRES 26 B 363 CYS ALA SER ASP GLU GLY GLU VAL ILE VAL PHE GLY GLY SEQRES 27 B 363 CYS ALA ASN ASN LEU LEU VAL HIS HIS ARG ALA ALA HIS SEQRES 28 B 363 SER ASN GLU ILE LEU ILE PHE SER VAL GLN PRO LYS SEQRES 1 D 6 ILE GLY LEU LEU GLY GLY SEQRES 1 C 6 ILE GLY LEU LEU GLY GLY FORMUL 5 HOH *128(H2 O) HELIX 1 AA1 GLU A 179 TRP A 183 5 5 HELIX 2 AA2 VAL A 344 ALA A 348 5 5 HELIX 3 AA3 GLU B 179 PHE B 182 5 4 HELIX 4 AA4 VAL B 344 ALA B 348 5 5 SHEET 1 AA1 4 VAL A 36 SER A 39 0 SHEET 2 AA1 4 HIS A 43 TRP A 47 -1 O PHE A 45 N VAL A 38 SHEET 3 AA1 4 GLU A 67 ASN A 72 -1 O TYR A 71 N MET A 44 SHEET 4 AA1 4 TRP A 78 ASN A 82 -1 O LYS A 79 N ILE A 70 SHEET 1 AA2 5 GLU A 84 GLY A 85 0 SHEET 2 AA2 5 GLN A 131 ARG A 134 1 O TRP A 132 N GLU A 84 SHEET 3 AA2 5 GLY A 113 ASP A 122 -1 N MET A 120 O GLU A 133 SHEET 4 AA2 5 VAL A 102 HIS A 110 -1 N LEU A 105 O TYR A 119 SHEET 5 AA2 5 CYS A 95 VAL A 99 -1 N CYS A 95 O PHE A 106 SHEET 1 AA3 4 LYS A 145 ASP A 146 0 SHEET 2 AA3 4 TYR A 163 GLY A 164 -1 O TYR A 163 N ASP A 146 SHEET 3 AA3 4 GLY A 190 ASN A 192 -1 O GLY A 190 N GLY A 164 SHEET 4 AA3 4 PHE A 175 PHE A 177 -1 N GLU A 176 O TRP A 191 SHEET 1 AA4 4 GLY A 149 TYR A 153 0 SHEET 2 AA4 4 LYS A 156 PHE A 160 -1 O ILE A 158 N TRP A 151 SHEET 3 AA4 4 VAL A 195 ASP A 199 -1 O LEU A 198 N LEU A 157 SHEET 4 AA4 4 THR A 204 SER A 206 -1 O SER A 206 N ILE A 197 SHEET 1 AA5 5 THR A 211 GLY A 212 0 SHEET 2 AA5 5 GLU A 254 LEU A 258 1 O TRP A 255 N THR A 211 SHEET 3 AA5 5 ALA A 240 ASN A 249 -1 N TYR A 247 O ASN A 256 SHEET 4 AA5 5 ARG A 229 TYR A 237 -1 N GLY A 235 O MET A 242 SHEET 5 AA5 5 ALA A 222 VAL A 226 -1 N ALA A 224 O PHE A 231 SHEET 1 AA6 4 SER A 272 PRO A 275 0 SHEET 2 AA6 4 HIS A 280 PHE A 284 -1 O PHE A 282 N THR A 274 SHEET 3 AA6 4 ALA A 297 CYS A 301 -1 O TYR A 300 N LEU A 281 SHEET 4 AA6 4 GLU A 306 PHE A 310 -1 O GLU A 306 N CYS A 301 SHEET 1 AA7 3 THR A 323 ALA A 326 0 SHEET 2 AA7 3 GLU A 331 PHE A 335 -1 O ILE A 333 N CYS A 325 SHEET 3 AA7 3 ILE A 354 SER A 358 -1 O LEU A 355 N VAL A 334 SHEET 1 AA8 4 VAL B 36 SER B 39 0 SHEET 2 AA8 4 HIS B 43 TRP B 47 -1 O PHE B 45 N VAL B 38 SHEET 3 AA8 4 GLU B 67 ASN B 72 -1 O TRP B 69 N VAL B 46 SHEET 4 AA8 4 TRP B 78 ASN B 82 -1 O ILE B 81 N LEU B 68 SHEET 1 AA9 5 GLU B 84 GLY B 85 0 SHEET 2 AA9 5 GLN B 131 ARG B 134 1 O TRP B 132 N GLU B 84 SHEET 3 AA9 5 GLY B 113 ASP B 122 -1 N MET B 120 O GLU B 133 SHEET 4 AA9 5 VAL B 102 HIS B 110 -1 N LEU B 103 O LEU B 121 SHEET 5 AA9 5 CYS B 95 VAL B 99 -1 N CYS B 95 O PHE B 106 SHEET 1 AB1 4 LYS B 145 ASP B 146 0 SHEET 2 AB1 4 TYR B 163 GLY B 164 -1 O TYR B 163 N ASP B 146 SHEET 3 AB1 4 GLY B 190 ASN B 192 -1 O GLY B 190 N GLY B 164 SHEET 4 AB1 4 PHE B 175 PHE B 177 -1 N GLU B 176 O TRP B 191 SHEET 1 AB2 4 GLY B 149 TYR B 153 0 SHEET 2 AB2 4 LYS B 156 PHE B 160 -1 O ILE B 158 N TRP B 151 SHEET 3 AB2 4 VAL B 195 ASP B 199 -1 O HIS B 196 N PHE B 159 SHEET 4 AB2 4 TRP B 205 SER B 206 -1 O SER B 206 N ILE B 197 SHEET 1 AB3 4 ALA B 222 VAL B 226 0 SHEET 2 AB3 4 ARG B 229 TYR B 237 -1 O PHE B 231 N ALA B 224 SHEET 3 AB3 4 ALA B 240 ASN B 249 -1 O LEU B 248 N GLY B 230 SHEET 4 AB3 4 TRP B 255 LEU B 258 -1 O LEU B 258 N LEU B 245 SHEET 1 AB4 4 SER B 272 SER B 277 0 SHEET 2 AB4 4 HIS B 280 PHE B 284 -1 O PHE B 282 N THR B 274 SHEET 3 AB4 4 ALA B 297 CYS B 301 -1 O TRP B 298 N LEU B 283 SHEET 4 AB4 4 GLU B 306 PHE B 310 -1 O PHE B 310 N ALA B 297 SHEET 1 AB5 3 THR B 323 ALA B 326 0 SHEET 2 AB5 3 GLU B 331 PHE B 335 -1 O ILE B 333 N CYS B 325 SHEET 3 AB5 3 ILE B 354 SER B 358 -1 O LEU B 355 N VAL B 334 CRYST1 44.496 87.086 88.322 90.00 104.56 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022474 0.000000 0.005838 0.00000 SCALE2 0.000000 0.011483 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011698 0.00000