PDB Short entry for 6OWL HEADER RNA 10-MAY-19 6OWL TITLE RNA OLIGONUCLEOTIDES WITH 3'-ARABINO GUANOSINE CO-CRYSTALLIZED WITH TITLE 2 GMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG) COMPND 3 P*AP*CP*UP*UP*AP*AP*GP*UP*CP*R)-3'); COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RNA (5'-R(P*G)-3'); COMPND 8 CHAIN: B, C; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: SYNTHETIC CONSTRUCT; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 32630; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630; SOURCE 9 EXPRESSION_SYSTEM: SYNTHETIC CONSTRUCT; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 32630 KEYWDS RNA, ARABINO EXPDTA X-RAY DIFFRACTION AUTHOR J.W.SZOSTAK,S.KIM,W.ZHANG REVDAT 2 11-OCT-23 6OWL 1 REMARK REVDAT 1 26-FEB-20 6OWL 0 JRNL AUTH S.C.KIM,L.ZHOU,W.ZHANG,D.K.O'FLAHERTY,V.RONDO-BROVETTO, JRNL AUTH 2 J.W.SZOSTAK JRNL TITL A MODEL FOR THE EMERGENCE OF RNA FROM A PREBIOTICALLY JRNL TITL 2 PLAUSIBLE MIXTURE OF RIBONUCLEOTIDES, ARABINONUCLEOTIDES, JRNL TITL 3 AND 2'-DEOXYNUCLEOTIDES. JRNL REF J.AM.CHEM.SOC. V. 142 2317 2020 JRNL REFN ESSN 1520-5126 JRNL PMID 31913615 JRNL DOI 10.1021/JACS.9B11239 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 3229 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.242 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.317 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 158 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.98 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 191 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE SET COUNT : 10 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 347 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 8 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.213 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.213 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.188 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.490 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.894 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 388 ; 0.017 ; 0.016 REMARK 3 BOND LENGTHS OTHERS (A): 168 ; 0.038 ; 0.023 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 606 ; 2.280 ; 1.836 REMARK 3 BOND ANGLES OTHERS (DEGREES): 402 ; 3.756 ; 3.198 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 68 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 186 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 66 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 386 ; 3.854 ; 4.421 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 385 ; 3.845 ; 4.424 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 605 ; 7.802 ; 6.623 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 511 ;10.181 ;39.499 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 511 ;10.183 ;39.396 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6OWL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1000241462. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 130 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 3409 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.56400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6C8D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.08 M SODIUM CHLORIDE, 0.012 M REMARK 280 POTASSIUM CHLORIDE, 0.02 M MAGNESIUM CHLORIDE HEXAHYDRATE, 0.04 REMARK 280 M SODIUM CACODYLATE TRIHYDRATE PH 6.0, 30% V/V (+/-)-2-METHYL-2, REMARK 280 4-PENTANEDIOL, 0.012 M SPERMINE TETRAHYDROCHLORIDE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 21.74150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 12.55246 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 42.51267 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 21.74150 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 12.55246 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 42.51267 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 21.74150 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 12.55246 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 42.51267 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 21.74150 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 12.55246 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 42.51267 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 21.74150 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 12.55246 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 42.51267 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 21.74150 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 12.55246 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 42.51267 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 25.10492 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 85.02533 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 25.10492 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 85.02533 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 25.10492 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 85.02533 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 25.10492 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 85.02533 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 25.10492 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 85.02533 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 25.10492 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 85.02533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 65.22450 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 -37.65738 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 255.07600 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 G B 2 REMARK 465 G C 2 DBREF 6OWL A 1 14 PDB 6OWL 6OWL 1 14 DBREF 6OWL B 1 2 PDB 6OWL 6OWL 1 2 DBREF 6OWL C 1 2 PDB 6OWL 6OWL 1 2 SEQRES 1 A 14 LCC LCC LCC LCG A C U U A A G U C SEQRES 2 A 14 GAO SEQRES 1 B 2 G G SEQRES 1 C 2 G G HET LCC A 1 19 HET LCC A 2 22 HET LCC A 3 22 HET LCG A 4 24 HET GAO A 14 23 HETNAM LCC [(1R,3R,4R,7S)-7-HYDROXY-3-(5-METHYLCYTOSIN-1-YL)-2,5- HETNAM 2 LCC DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN HETNAM 3 LCC PHOSPHATE HETNAM LCG [(1R,3R,4R,7S)-7-HYDROXY-3-(GUANIN-9-YL)-2,5- HETNAM 2 LCG DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN HETNAM 3 LCG PHOSPHATE HETNAM GAO GUANINE ARABINOSE-5'-PHOSPHATE FORMUL 1 LCC 3(C11 H16 N3 O8 P) FORMUL 1 LCG C11 H14 N5 O8 P FORMUL 1 GAO C10 H14 N5 O8 P FORMUL 4 HOH *8(H2 O) LINK O3' LCC A 1 P LCC A 2 1555 1555 1.61 LINK O3' LCC A 2 P LCC A 3 1555 1555 1.61 LINK O3' LCC A 3 P LCG A 4 1555 1555 1.60 LINK O3' LCG A 4 P A A 5 1555 1555 1.56 LINK O3' C A 13 P GAO A 14 1555 1555 1.60 CRYST1 43.483 43.483 127.538 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022997 0.013278 0.000000 0.00000 SCALE2 0.000000 0.026555 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007841 0.00000 HETATM 1 O5' LCC A 1 44.578 18.225 109.212 1.00 36.68 O HETATM 2 C5' LCC A 1 43.205 18.557 109.260 1.00 38.64 C HETATM 3 C4' LCC A 1 42.576 17.178 108.896 1.00 36.80 C HETATM 4 O4' LCC A 1 43.121 16.396 107.792 1.00 32.64 O HETATM 5 C1' LCC A 1 42.604 15.062 108.070 1.00 33.97 C HETATM 6 N1 LCC A 1 43.694 14.090 108.108 1.00 34.90 N HETATM 7 C6 LCC A 1 45.041 14.512 108.187 1.00 36.76 C HETATM 8 C5 LCC A 1 46.054 13.562 108.121 1.00 36.26 C HETATM 9 C5M LCC A 1 47.393 13.971 108.249 1.00 40.42 C HETATM 10 C4 LCC A 1 45.666 12.235 107.986 1.00 39.82 C HETATM 11 N4 LCC A 1 46.620 11.290 107.971 1.00 41.81 N HETATM 12 N3 LCC A 1 44.375 11.902 107.880 1.00 37.36 N HETATM 13 C2 LCC A 1 43.388 12.810 107.946 1.00 35.62 C HETATM 14 O2 LCC A 1 42.205 12.461 107.848 1.00 37.91 O HETATM 15 C3' LCC A 1 42.634 16.244 110.061 1.00 36.51 C HETATM 16 C2' LCC A 1 41.838 15.196 109.324 1.00 37.12 C HETATM 17 O2' LCC A 1 40.600 15.911 108.936 1.00 40.66 O HETATM 18 O3' LCC A 1 41.852 16.711 111.213 1.00 44.67 O HETATM 19 C6' LCC A 1 41.101 17.295 108.554 1.00 36.24 C HETATM 20 O5' LCC A 2 41.457 14.764 112.697 1.00 40.51 O HETATM 21 C5' LCC A 2 39.996 14.709 112.491 1.00 40.42 C HETATM 22 C4' LCC A 2 39.808 13.227 112.285 1.00 39.15 C HETATM 23 O4' LCC A 2 40.526 12.746 111.130 1.00 42.16 O HETATM 24 C1' LCC A 2 40.663 11.312 111.333 1.00 39.37 C HETATM 25 N1 LCC A 2 42.095 10.874 111.278 1.00 36.10 N HETATM 26 C6 LCC A 2 43.116 11.808 111.390 1.00 37.11 C HETATM 27 C5 LCC A 2 44.439 11.413 111.297 1.00 39.87 C HETATM 28 C5M LCC A 2 45.449 12.378 111.415 1.00 44.90 C HETATM 29 C4 LCC A 2 44.713 10.056 111.120 1.00 38.08 C HETATM 30 N4 LCC A 2 45.998 9.700 111.063 1.00 37.86 N HETATM 31 N3 LCC A 2 43.717 9.173 111.003 1.00 37.93 N HETATM 32 C2 LCC A 2 42.420 9.573 111.100 1.00 40.85 C HETATM 33 O2 LCC A 2 41.537 8.727 111.009 1.00 36.48 O HETATM 34 C3' LCC A 2 40.367 12.358 113.389 1.00 37.91 C HETATM 35 C2' LCC A 2 39.987 11.141 112.665 1.00 39.05 C HETATM 36 O2' LCC A 2 38.554 11.357 112.497 1.00 40.83 O HETATM 37 O3' LCC A 2 39.581 12.411 114.622 1.00 41.85 O HETATM 38 C6' LCC A 2 38.355 12.798 112.155 1.00 42.75 C HETATM 39 P LCC A 2 42.185 16.169 112.693 1.00 43.68 P HETATM 40 O1P LCC A 2 41.397 17.067 113.543 1.00 41.48 O HETATM 41 O2P LCC A 2 43.638 16.005 112.881 1.00 37.70 O HETATM 42 O5' LCC A 3 40.473 10.509 116.076 1.00 34.07 O HETATM 43 C5' LCC A 3 39.364 9.597 115.884 1.00 35.71 C HETATM 44 C4' LCC A 3 40.055 8.241 115.588 1.00 34.22 C HETATM 45 O4' LCC A 3 40.786 8.375 114.374 1.00 34.32 O HETATM 46 C1' LCC A 3 41.748 7.303 114.360 1.00 33.01 C HETATM 47 N1 LCC A 3 43.157 7.837 114.331 1.00 32.34 N HETATM 48 C6 LCC A 3 43.392 9.193 114.566 1.00 33.11 C HETATM 49 C5 LCC A 3 44.647 9.706 114.560 1.00 32.19 C HETATM 50 C5M LCC A 3 44.772 11.080 114.804 1.00 37.58 C HETATM 51 C4 LCC A 3 45.711 8.829 114.273 1.00 34.14 C HETATM 52 N4 LCC A 3 46.944 9.336 114.248 1.00 31.58 N HETATM 53 N3 LCC A 3 45.474 7.504 114.102 1.00 29.40 N HETATM 54 C2 LCC A 3 44.203 7.034 114.092 1.00 28.82 C HETATM 55 O2 LCC A 3 44.001 5.835 113.883 1.00 29.42 O HETATM 56 C3' LCC A 3 41.105 7.787 116.569 1.00 33.21 C HETATM 57 C2' LCC A 3 41.426 6.579 115.630 1.00 31.91 C HETATM 58 O2' LCC A 3 40.210 5.928 115.539 1.00 30.53 O HETATM 59 O3' LCC A 3 40.513 7.394 117.790 1.00 38.00 O HETATM 60 C6' LCC A 3 39.139 7.044 115.517 1.00 32.50 C HETATM 61 P LCC A 3 40.281 12.162 116.049 1.00 35.18 P HETATM 62 O1P LCC A 3 39.095 12.614 116.838 1.00 35.13 O HETATM 63 O2P LCC A 3 41.633 12.737 116.271 1.00 36.65 O HETATM 64 P LCG A 4 41.297 7.463 119.186 1.00 33.66 P HETATM 65 OP1 LCG A 4 40.312 7.157 120.226 1.00 36.37 O HETATM 66 O5' LCG A 4 42.374 6.276 119.077 1.00 29.14 O HETATM 67 C5' LCG A 4 41.851 4.893 119.084 1.00 30.57 C HETATM 68 C3' LCG A 4 44.174 4.162 119.705 1.00 28.27 C HETATM 69 C6' LCG A 4 42.809 2.532 118.530 1.00 27.49 C HETATM 70 N9 LCG A 4 45.969 5.029 117.300 1.00 32.87 N HETATM 71 C8 LCG A 4 45.659 6.333 117.278 1.00 36.27 C HETATM 72 C4 LCG A 4 47.255 4.883 116.922 1.00 30.83 C HETATM 73 N7 LCG A 4 46.781 6.992 116.946 1.00 39.19 N HETATM 74 C5 LCG A 4 47.759 6.092 116.703 1.00 34.88 C HETATM 75 C6 LCG A 4 49.041 6.251 116.316 1.00 35.57 C HETATM 76 C2' LCG A 4 45.043 3.218 118.962 1.00 30.83 C HETATM 77 O6 LCG A 4 49.545 7.365 116.119 1.00 32.95 O HETATM 78 C4' LCG A 4 43.091 4.041 118.727 1.00 29.00 C HETATM 79 C1' LCG A 4 45.052 3.900 117.562 1.00 32.11 C HETATM 80 C2 LCG A 4 49.303 3.873 116.389 1.00 33.52 C HETATM 81 N1 LCG A 4 49.857 5.141 116.172 1.00 35.15 N HETATM 82 O4' LCG A 4 43.702 4.436 117.469 1.00 29.07 O HETATM 83 OP2 LCG A 4 42.059 8.747 119.216 1.00 33.62 O HETATM 84 N2 LCG A 4 50.086 2.824 116.270 1.00 28.89 N HETATM 85 N3 LCG A 4 48.016 3.784 116.781 1.00 31.13 N HETATM 86 O2' LCG A 4 44.219 2.048 118.712 1.00 32.13 O HETATM 87 O3' LCG A 4 43.660 3.775 121.022 1.00 32.81 O