PDB Short entry for 6WCW
HEADER    METAL BINDING PROTEIN                   31-MAR-20   6WCW              
TITLE     STRUCTURE OF HUMAN RUBICON RH DOMAIN IN COMPLEX WITH GTP-BOUND RAB7   
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: RAS-RELATED PROTEIN RAB-7A;                                
COMPND   3 CHAIN: B;                                                            
COMPND   4 ENGINEERED: YES;                                                     
COMPND   5 MUTATION: YES;                                                       
COMPND   6 MOL_ID: 2;                                                           
COMPND   7 MOLECULE: RUN DOMAIN BECLIN-1-INTERACTING AND CYSTEINE-RICH DOMAIN-  
COMPND   8 CONTAINING PROTEIN;                                                  
COMPND   9 CHAIN: A;                                                            
COMPND  10 FRAGMENT: RH DOMAIN;                                                 
COMPND  11 SYNONYM: RUBICON, BECLIN-1 ASSOCIATED RUN DOMAIN CONTAINING PROTEIN, 
COMPND  12 BARON;                                                               
COMPND  13 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: RAB7A, RAB7;                                                   
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21;                            
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 511693;                                     
SOURCE   8 MOL_ID: 2;                                                           
SOURCE   9 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE  10 ORGANISM_COMMON: HUMAN;                                              
SOURCE  11 ORGANISM_TAXID: 9606;                                                
SOURCE  12 GENE: RUBCN, KIAA0226;                                               
SOURCE  13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21;                            
SOURCE  14 EXPRESSION_SYSTEM_TAXID: 511693                                      
KEYWDS    AUTOPHAGY, RAB, GTPASE, AGING, ZINC FINGER, G PROTEIN, METAL BINDING  
KEYWDS   2 PROTEIN                                                              
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    H.K.BHARGAVA,J.M.BYCK,D.P.FARRELL,I.ANISHCHENKO,F.DIMAIO,Y.J.IM,      
AUTHOR   2 J.H.HURLEY                                                           
REVDAT   3   05-AUG-20 6WCW    1       JRNL   LINK                              
REVDAT   2   22-JUL-20 6WCW    1       JRNL                                     
REVDAT   1   01-JUL-20 6WCW    0                                                
JRNL        AUTH   H.K.BHARGAVA,K.TABATA,J.M.BYCK,M.HAMASAKI,D.P.FARRELL,       
JRNL        AUTH 2 I.ANISHCHENKO,F.DIMAIO,Y.J.IM,T.YOSHIMORI,J.H.HURLEY         
JRNL        TITL   STRUCTURAL BASIS FOR AUTOPHAGY INHIBITION BY THE HUMAN       
JRNL        TITL 2 RUBICON-RAB7 COMPLEX.                                        
JRNL        REF    PROC.NATL.ACAD.SCI.USA        V. 117 17003 2020              
JRNL        REFN                   ESSN 1091-6490                               
JRNL        PMID   32632011                                                     
JRNL        DOI    10.1073/PNAS.2008030117                                      
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.80 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : PHENIX 1.14_3260                                     
REMARK   3   AUTHORS     : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN            
REMARK   3               : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,           
REMARK   3               : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,            
REMARK   3               : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,              
REMARK   3               : REETAL PAI,RANDY READ,JANE RICHARDSON,               
REMARK   3               : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,           
REMARK   3               : NICHOLAS SAUTER,JACOB SMITH,LAURENT                  
REMARK   3               : STORONI,TOM TERWILLIGER,PETER ZWART                  
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : NULL                                          
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 54.22                          
REMARK   3   MIN(FOBS/SIGMA_FOBS)              : 1.350                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 98.9                           
REMARK   3   NUMBER OF REFLECTIONS             : 12395                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.202                           
REMARK   3   R VALUE            (WORKING SET) : 0.200                           
REMARK   3   FREE R VALUE                     : 0.258                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 4.770                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 591                             
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT (IN BINS).                           
REMARK   3   BIN  RESOLUTION RANGE  COMPL.    NWORK NFREE   RWORK  RFREE        
REMARK   3     1 54.2200 -  4.4400    0.99     3025   155  0.1735 0.2353        
REMARK   3     2  4.4400 -  3.5300    0.99     2958   137  0.1749 0.2124        
REMARK   3     3  3.5300 -  3.0800    0.99     2898   169  0.2443 0.3102        
REMARK   3     4  3.0800 -  2.8000    0.99     2923   130  0.2824 0.3922        
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED        : FLAT BULK SOLVENT MODEL                       
REMARK   3   SOLVENT RADIUS     : 1.11                                          
REMARK   3   SHRINKAGE RADIUS   : 0.90                                          
REMARK   3   K_SOL              : NULL                                          
REMARK   3   B_SOL              : NULL                                          
REMARK   3                                                                      
REMARK   3  ERROR ESTIMATES.                                                    
REMARK   3   COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED)     : 0.384            
REMARK   3   PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.199           
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : 50.62                          
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 58.14                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : NULL                                                 
REMARK   3    B22 (A**2) : NULL                                                 
REMARK   3    B33 (A**2) : NULL                                                 
REMARK   3    B12 (A**2) : NULL                                                 
REMARK   3    B13 (A**2) : NULL                                                 
REMARK   3    B23 (A**2) : NULL                                                 
REMARK   3                                                                      
REMARK   3  TWINNING INFORMATION.                                               
REMARK   3   FRACTION: NULL                                                     
REMARK   3   OPERATOR: NULL                                                     
REMARK   3                                                                      
REMARK   3  DEVIATIONS FROM IDEAL VALUES.                                       
REMARK   3                 RMSD          COUNT                                  
REMARK   3   BOND      :  0.009           3512                                  
REMARK   3   ANGLE     :  1.054           4748                                  
REMARK   3   CHIRALITY :  0.056            521                                  
REMARK   3   PLANARITY :  0.006            607                                  
REMARK   3   DIHEDRAL  : 24.585           1320                                  
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : 1                                          
REMARK   3   TLS GROUP : 1                                                      
REMARK   3    SELECTION: ALL                                                    
REMARK   3    ORIGIN FOR THE GROUP (A):  -3.9739  24.7072  38.6235              
REMARK   3    T TENSOR                                                          
REMARK   3      T11:   0.2649 T22:   0.3755                                     
REMARK   3      T33:   0.3226 T12:   0.0320                                     
REMARK   3      T13:  -0.0048 T23:   0.0958                                     
REMARK   3    L TENSOR                                                          
REMARK   3      L11:   0.2089 L22:  -0.0073                                     
REMARK   3      L33:   2.4046 L12:   0.2259                                     
REMARK   3      L13:  -1.0671 L23:  -0.3805                                     
REMARK   3    S TENSOR                                                          
REMARK   3      S11:   0.0467 S12:   0.0857 S13:   0.0241                       
REMARK   3      S21:   0.0111 S22:   0.0599 S23:   0.0001                       
REMARK   3      S31:  -0.0456 S32:  -0.3069 S33:  -0.0391                       
REMARK   3                                                                      
REMARK   3  NCS DETAILS                                                         
REMARK   3   NUMBER OF NCS GROUPS : NULL                                        
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 6WCW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-APR-20.                  
REMARK 100 THE DEPOSITION ID IS D_1000247762.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 25-APR-19                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 7.4                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : ALS                                
REMARK 200  BEAMLINE                       : 8.3.1                              
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.283                              
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : PIXEL                              
REMARK 200  DETECTOR MANUFACTURER          : DECTRIS PILATUS3 S 6M              
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : MOSFLM                             
REMARK 200  DATA SCALING SOFTWARE          : AIMLESS                            
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 12498                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.800                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 92.110                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : NULL                               
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 99.1                               
REMARK 200  DATA REDUNDANCY                : 2.800                              
REMARK 200  R MERGE                    (I) : NULL                               
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 6.4000                             
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.95                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 98.8                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 2.80                               
REMARK 200  R MERGE FOR SHELL          (I) : NULL                               
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 2.200                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: PHASER                                                
REMARK 200 STARTING MODEL: 1YHN                                                 
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 51.51                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 6% (W/V) PEG 8000, 100MM TRIS-HCL PH     
REMARK 280  7.4, 15MM TCEP, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K     
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1                          
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,Y,-Z                                                 
REMARK 290       3555   X+1/2,Y+1/2,Z+1/2                                       
REMARK 290       4555   -X+1/2,Y+1/2,-Z+1/2                                     
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1   3  1.000000  0.000000  0.000000       16.24200            
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000       22.66500            
REMARK 290   SMTRY3   3  0.000000  0.000000  1.000000       92.11377            
REMARK 290   SMTRY1   4 -1.000000  0.000000  0.000000       16.24200            
REMARK 290   SMTRY2   4  0.000000  1.000000  0.000000       22.66500            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000       92.11377            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC                    
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     SER B    -1                                                      
REMARK 465     ASN B     0                                                      
REMARK 465     ALA B     1                                                      
REMARK 465     THR B     2                                                      
REMARK 465     SER B     3                                                      
REMARK 465     ARG B     4                                                      
REMARK 465     LYS B     5                                                      
REMARK 465     LYS B     6                                                      
REMARK 465     SER A   696                                                      
REMARK 465     ARG A   944                                                      
REMARK 465     GLN A   945                                                      
REMARK 465     SER A   946                                                      
REMARK 465     LEU A   947                                                      
REMARK 465     GLU A   948                                                      
REMARK 465     SER A   949                                                      
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT                     
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   O    LEU A   906     NZ   LYS A   921              2.05            
REMARK 500   NH2  ARG B   132     OE2  GLU B   153              2.09            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC             
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT.  AN ATOM LOCATED WITHIN 0.15          
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A           
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375             
REMARK 500 INSTEAD OF REMARK 500.  ATOMS WITH NON-BLANK ALTERNATE               
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.            
REMARK 500                                                                      
REMARK 500 DISTANCE CUTOFF:                                                     
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS              
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS                  
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI  SSYMOP   DISTANCE          
REMARK 500   NH2  ARG B   113     O    HIS A   705     4455     2.05            
REMARK 500   O    LYS A   860     NZ   LYS A   925     4455     2.16            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500    CYS A 923   CA  -  CB  -  SG  ANGL. DEV. =   7.3 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    ASP B  54      -16.48     69.14                                   
REMARK 500    LEU B  67      -99.99    -65.18                                   
REMARK 500    GLU B  68       44.34   -160.78                                   
REMARK 500    ARG B  69       42.63    -98.66                                   
REMARK 500    SER B  72      -17.18     70.36                                   
REMARK 500    VAL B  75       25.12   -149.38                                   
REMARK 500    ASP B 114       71.64     58.26                                   
REMARK 500    LYS B 126       34.66     81.06                                   
REMARK 500    ASN B 148       61.49     63.68                                   
REMARK 500    ILE A 701      -38.20   -131.92                                   
REMARK 500    GLN A 717       40.91   -107.57                                   
REMARK 500    TRP A 766       53.61    -91.13                                   
REMARK 500    ALA A 829       50.08   -102.90                                   
REMARK 500    LYS A 916        7.46     58.47                                   
REMARK 500    PHE A 924      -91.00    -96.79                                   
REMARK 500    LYS A 925      -45.03      5.23                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              MG B1402  MG                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 THR B  22   OG1                                                    
REMARK 620 2 THR B  40   OG1 136.2                                              
REMARK 620 3 GTP B1401   O1G 120.6  86.6                                        
REMARK 620 4 GTP B1401   O2B  71.6 152.1  73.7                                  
REMARK 620 N                    1     2     3                                   
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              ZN A1001  ZN                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 CYS A 721   SG                                                     
REMARK 620 2 CYS A 724   SG  106.5                                              
REMARK 620 3 CYS A 747   SG  122.1 119.5                                        
REMARK 620 4 CYS A 750   SG  108.6  99.5  97.1                                  
REMARK 620 N                    1     2     3                                   
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              ZN A1002  ZN                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 CYS A 826   SG                                                     
REMARK 620 2 HIS A 877   NE2 136.1                                              
REMARK 620 3 CYS A 881   SG  105.4  95.3                                        
REMARK 620 4 CYS A 884   SG  100.3 107.0 112.3                                  
REMARK 620 N                    1     2     3                                   
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              ZN A1003  ZN                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 CYS A 891   SG                                                     
REMARK 620 2 CYS A 894   SG  103.2                                              
REMARK 620 3 HIS A 920   ND1 117.6 105.9                                        
REMARK 620 4 CYS A 923   SG  102.2 111.1 116.1                                  
REMARK 620 N                    1     2     3                                   
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              ZN A1004  ZN                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 CYS A 912   SG                                                     
REMARK 620 2 CYS A 915   SG   93.5                                              
REMARK 620 3 CYS A 929   SG  114.0  84.2                                        
REMARK 620 N                    1     2                                         
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue GTP B 1401                
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 1402                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1001                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC4                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1002                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC5                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1003                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC6                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1004                 
DBREF  6WCW B    2   182  UNP    P51149   RAB7A_HUMAN      2    182             
DBREF  6WCW A  699   949  UNP    Q92622   RUBIC_HUMAN    699    949             
SEQADV 6WCW SER B   -1  UNP  P51149              EXPRESSION TAG                 
SEQADV 6WCW ASN B    0  UNP  P51149              EXPRESSION TAG                 
SEQADV 6WCW ALA B    1  UNP  P51149              EXPRESSION TAG                 
SEQADV 6WCW LEU B   67  UNP  P51149    GLN    67 ENGINEERED MUTATION            
SEQADV 6WCW SER A  696  UNP  Q92622              EXPRESSION TAG                 
SEQADV 6WCW ASN A  697  UNP  Q92622              EXPRESSION TAG                 
SEQADV 6WCW ALA A  698  UNP  Q92622              EXPRESSION TAG                 
SEQRES   1 B  184  SER ASN ALA THR SER ARG LYS LYS VAL LEU LEU LYS VAL          
SEQRES   2 B  184  ILE ILE LEU GLY ASP SER GLY VAL GLY LYS THR SER LEU          
SEQRES   3 B  184  MET ASN GLN TYR VAL ASN LYS LYS PHE SER ASN GLN TYR          
SEQRES   4 B  184  LYS ALA THR ILE GLY ALA ASP PHE LEU THR LYS GLU VAL          
SEQRES   5 B  184  MET VAL ASP ASP ARG LEU VAL THR MET GLN ILE TRP ASP          
SEQRES   6 B  184  THR ALA GLY LEU GLU ARG PHE GLN SER LEU GLY VAL ALA          
SEQRES   7 B  184  PHE TYR ARG GLY ALA ASP CYS CYS VAL LEU VAL PHE ASP          
SEQRES   8 B  184  VAL THR ALA PRO ASN THR PHE LYS THR LEU ASP SER TRP          
SEQRES   9 B  184  ARG ASP GLU PHE LEU ILE GLN ALA SER PRO ARG ASP PRO          
SEQRES  10 B  184  GLU ASN PHE PRO PHE VAL VAL LEU GLY ASN LYS ILE ASP          
SEQRES  11 B  184  LEU GLU ASN ARG GLN VAL ALA THR LYS ARG ALA GLN ALA          
SEQRES  12 B  184  TRP CYS TYR SER LYS ASN ASN ILE PRO TYR PHE GLU THR          
SEQRES  13 B  184  SER ALA LYS GLU ALA ILE ASN VAL GLU GLN ALA PHE GLN          
SEQRES  14 B  184  THR ILE ALA ARG ASN ALA LEU LYS GLN GLU THR GLU VAL          
SEQRES  15 B  184  GLU LEU                                                      
SEQRES   1 A  254  SER ASN ALA GLN ILE ILE PHE ASN VAL HIS PRO ALA PRO          
SEQRES   2 A  254  THR ARG LYS ILE ALA VAL ALA LYS GLN ASN TYR ARG CYS          
SEQRES   3 A  254  ALA GLY CYS GLY ILE ARG THR ASP PRO ASP TYR ILE LYS          
SEQRES   4 A  254  ARG LEU ARG TYR CYS GLU TYR LEU GLY LYS TYR PHE CYS          
SEQRES   5 A  254  GLN CYS CYS HIS GLU ASN ALA GLN MET ALA ILE PRO SER          
SEQRES   6 A  254  ARG VAL LEU ARG LYS TRP ASP PHE SER LYS TYR TYR VAL          
SEQRES   7 A  254  SER ASN PHE SER LYS ASP LEU LEU ILE LYS ILE TRP ASN          
SEQRES   8 A  254  ASP PRO LEU PHE ASN VAL GLN ASP ILE ASN SER ALA LEU          
SEQRES   9 A  254  TYR ARG LYS VAL LYS LEU LEU ASN GLN VAL ARG LEU LEU          
SEQRES  10 A  254  ARG VAL GLN LEU CYS HIS MET LYS ASN MET PHE LYS THR          
SEQRES  11 A  254  CYS ARG LEU ALA LYS GLU LEU LEU ASP SER PHE ASP THR          
SEQRES  12 A  254  VAL PRO GLY HIS LEU THR GLU ASP LEU HIS LEU TYR SER          
SEQRES  13 A  254  LEU ASN ASP LEU THR ALA THR ARG LYS GLY GLU LEU GLY          
SEQRES  14 A  254  PRO ARG LEU ALA GLU LEU THR ARG ALA GLY ALA THR HIS          
SEQRES  15 A  254  VAL GLU ARG CYS MET LEU CYS GLN ALA LYS GLY PHE ILE          
SEQRES  16 A  254  CYS GLU PHE CYS GLN ASN GLU ASP ASP ILE ILE PHE PRO          
SEQRES  17 A  254  PHE GLU LEU HIS LYS CYS ARG THR CYS GLU GLU CYS LYS          
SEQRES  18 A  254  ALA CYS TYR HIS LYS ALA CYS PHE LYS SER GLY SER CYS          
SEQRES  19 A  254  PRO ARG CYS GLU ARG LEU GLN ALA ARG ARG GLU ALA LEU          
SEQRES  20 A  254  ALA ARG GLN SER LEU GLU SER                                  
HET    GTP  B1401      32                                                       
HET     MG  B1402       1                                                       
HET     ZN  A1001       1                                                       
HET     ZN  A1002       1                                                       
HET     ZN  A1003       1                                                       
HET     ZN  A1004       1                                                       
HETNAM     GTP GUANOSINE-5'-TRIPHOSPHATE                                        
HETNAM      MG MAGNESIUM ION                                                    
HETNAM      ZN ZINC ION                                                         
FORMUL   3  GTP    C10 H16 N5 O14 P3                                            
FORMUL   4   MG    MG 2+                                                        
FORMUL   5   ZN    4(ZN 2+)                                                     
HELIX    1 AA1 GLY B   20  LYS B   31  1                                  12    
HELIX    2 AA2 VAL B   75  ARG B   79  5                                   5    
HELIX    3 AA3 ALA B   92  THR B   98  1                                   7    
HELIX    4 AA4 THR B   98  SER B  111  1                                  14    
HELIX    5 AA5 ASP B  114  PHE B  118  5                                   5    
HELIX    6 AA6 ALA B  135  LYS B  146  1                                  12    
HELIX    7 AA7 ASN B  161  THR B  178  1                                  18    
HELIX    8 AA8 ALA A  707  GLN A  717  1                                  11    
HELIX    9 AA9 ASP A  729  LEU A  736  5                                   8    
HELIX   10 AB1 ILE A  758  ARG A  764  1                                   7    
HELIX   11 AB2 SER A  774  ILE A  784  1                                  11    
HELIX   12 AB3 VAL A  792  ASN A  796  1                                   5    
HELIX   13 AB4 ALA A  798  VAL A  803  1                                   6    
HELIX   14 AB5 VAL A  803  LYS A  824  1                                  22    
HELIX   15 AB6 ALA A  829  PHE A  836  1                                   8    
HELIX   16 AB7 PRO A  840  ASP A  846  1                                   7    
HELIX   17 AB8 SER A  851  LYS A  860  1                                  10    
HELIX   18 AB9 GLU A  862  CYS A  881  1                                  20    
HELIX   19 AC1 CYS A  884  GLY A  888  5                                   5    
HELIX   20 AC2 CYS A  929  ALA A  943  1                                  15    
SHEET    1 AA1 6 ASP B  44  VAL B  52  0                                        
SHEET    2 AA1 6 ARG B  55  ASP B  63 -1  O  MET B  59   N  LYS B  48           
SHEET    3 AA1 6 LEU B   8  LEU B  14  1  N  ILE B  13   O  TRP B  62           
SHEET    4 AA1 6 CYS B  83  ASP B  89  1  O  VAL B  85   N  LEU B  14           
SHEET    5 AA1 6 PHE B 120  ASN B 125  1  O  ASN B 125   N  PHE B  88           
SHEET    6 AA1 6 TYR B 151  THR B 154  1  O  PHE B 152   N  GLY B 124           
SHEET    1 AA2 2 ARG A 737  TYR A 738  0                                        
SHEET    2 AA2 2 TYR A 745  PHE A 746 -1  O  PHE A 746   N  ARG A 737           
SHEET    1 AA3 2 ALA A 754  MET A 756  0                                        
SHEET    2 AA3 2 TYR A 771  VAL A 773 -1  O  VAL A 773   N  ALA A 754           
SHEET    1 AA4 2 PHE A 790  ASN A 791  0                                        
SHEET    2 AA4 2 LEU A 849  TYR A 850 -1  O  TYR A 850   N  PHE A 790           
SHEET    1 AA5 2 CYS A 909  THR A 911  0                                        
SHEET    2 AA5 2 CYS A 918  HIS A 920 -1  O  TYR A 919   N  ARG A 910           
LINK         OG1 THR B  22                MG    MG B1402     1555   1555  1.84  
LINK         OG1 THR B  40                MG    MG B1402     1555   1555  2.02  
LINK         O1G GTP B1401                MG    MG B1402     1555   1555  1.86  
LINK         O2B GTP B1401                MG    MG B1402     1555   1555  2.26  
LINK         SG  CYS A 721                ZN    ZN A1001     1555   1555  1.98  
LINK         SG  CYS A 724                ZN    ZN A1001     1555   1555  2.04  
LINK         SG  CYS A 747                ZN    ZN A1001     1555   1555  2.01  
LINK         SG  CYS A 750                ZN    ZN A1001     1555   1555  2.23  
LINK         SG  CYS A 826                ZN    ZN A1002     1555   1555  2.12  
LINK         NE2 HIS A 877                ZN    ZN A1002     1555   1555  1.83  
LINK         SG  CYS A 881                ZN    ZN A1002     1555   1555  2.28  
LINK         SG  CYS A 884                ZN    ZN A1002     1555   1555  2.15  
LINK         SG  CYS A 891                ZN    ZN A1003     1555   1555  2.11  
LINK         SG  CYS A 894                ZN    ZN A1003     1555   1555  2.23  
LINK         SG  CYS A 912                ZN    ZN A1004     1555   1555  2.34  
LINK         SG  CYS A 915                ZN    ZN A1004     1555   1555  2.34  
LINK         ND1 HIS A 920                ZN    ZN A1003     1555   1555  1.85  
LINK         SG  CYS A 923                ZN    ZN A1003     1555   1555  2.03  
LINK         SG  CYS A 929                ZN    ZN A1004     1555   1555  2.44  
SITE     1 AC1 22 SER B  17  GLY B  18  VAL B  19  GLY B  20                    
SITE     2 AC1 22 LYS B  21  THR B  22  SER B  23  PHE B  33                    
SITE     3 AC1 22 SER B  34  ASN B  35  TYR B  37  THR B  40                    
SITE     4 AC1 22 THR B  64  GLY B  66  ASN B 125  LYS B 126                    
SITE     5 AC1 22 ASP B 128  LEU B 129  SER B 155  ALA B 156                    
SITE     6 AC1 22 LYS B 157   MG B1402                                          
SITE     1 AC2  6 LYS B  21  THR B  22  THR B  40  ASP B  63                    
SITE     2 AC2  6 THR B  64  GTP B1401                                          
SITE     1 AC3  4 CYS A 721  CYS A 724  CYS A 747  CYS A 750                    
SITE     1 AC4  4 CYS A 826  HIS A 877  CYS A 881  CYS A 884                    
SITE     1 AC5  4 CYS A 891  CYS A 894  HIS A 920  CYS A 923                    
SITE     1 AC6  4 CYS A 912  CYS A 915  CYS A 929  CYS A 932                    
CRYST1   60.040   45.330  186.277  90.00  98.51  90.00 I 1 2 1       4          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.016656  0.000000  0.002491        0.00000                         
SCALE2      0.000000  0.022060  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.005428        0.00000