HEADSC 2rko COMMNT S2C correlation file created: Mon Mar 31 17:01:36 EST 2008 COMMNT COMMNT If you use this database, please cite: COMMNT COMMNT Guoli Wang, Jonathan W. Arthur, and Roland L. Dunbrack, Jr. COMMNT "S2C: A database correlating sequence and atomic COMMNT coordinate numbering in the Protein Data Bank" COMMNT dunbrack.fccc.edu/Guoli/s2c COMMNT Copyright (c) February 2000, April 2002. COMMNT COMMNT SEQCRD columns are as follows: COMMNT COMMNT Column Positions Item COMMNT 1 0-6 Record identifier COMMNT 2 8 Chain COMMNT 3 10 One letter residue code COMMNT 4 12-14 SEQRES three letter residue code COMMNT 5 16-18 ATOM three letter residue code COMMNT 6 20-24 SEQRES residue number COMMNT 7 26-31 ATOM residue number COMMNT 8 33 PDB secondary structure COMMNT 9 35 STRIDE secondary structure COMMNT 10 37-43 Error flags COMMNT COMMNT Secondary structrue annotation: COMMNT H: Helix E: Strand T: Turn COMMNT B: Bridge G: 310Helix C: Coil COMMNT SEQCRD A M MET --- 1 - - - 367 SEQCRD A G GLY --- 2 - - - 367 SEQCRD A H HIS --- 3 - - - 367 SEQCRD A H HIS --- 4 - - - 367 SEQCRD A H HIS --- 5 - - - 367 SEQCRD A H HIS --- 6 - - - 367 SEQCRD A H HIS --- 7 - - - 367 SEQCRD A H HIS --- 8 - - - 367 SEQCRD A S SER --- 9 - - - 367 SEQCRD A R ARG --- 10 - - - 367 SEQCRD A G GLY --- 11 - - - 367 SEQCRD A L LEU --- 12 - - - 367 SEQCRD A V VAL --- 13 - - - 367 SEQCRD A P PRO --- 14 - - - 367 SEQCRD A R ARG --- 15 - - - 367 SEQCRD A G GLY --- 16 - - - 367 SEQCRD A S SER --- 17 - - - 367 SEQCRD A L LEU --- 18 - - - 367 SEQCRD A S SER --- 19 - - - 367 SEQCRD A E GLU --- 20 - - - 367 SEQCRD A K LYS --- 21 - - - 367 SEQCRD A P PRO --- 22 - - - 367 SEQCRD A N ASN ASN 23 129 C C 4 SEQCRD A V VAL VAL 24 130 C C 4 SEQCRD A K LYS LYS 25 131 H C 45 SEQCRD A W TRP TRP 26 132 H G 45 SEQCRD A E GLU GLU 27 133 H G 45 SEQCRD A D ASP ASP 28 134 H G 45 SEQCRD A V VAL VAL 29 135 H C 45 SEQCRD A A ALA ALA 30 136 H C 45 SEQCRD A G GLY GLY 31 137 C C 4 SEQCRD A L LEU LEU 32 138 C T 45 SEQCRD A E GLU GLU 33 139 C T 45 SEQCRD A G GLY GLY 34 140 C T 45 SEQCRD A A ALA ALA 35 141 H T 45 SEQCRD A K LYS LYS 36 142 H H 4 SEQCRD A E GLU GLU 37 143 H H 4 SEQCRD A A ALA ALA 38 144 H H 4 SEQCRD A L LEU LEU 39 145 H H 4 SEQCRD A K LYS LYS 40 146 H H 4 SEQCRD A E GLU GLU 41 147 H H 4 SEQCRD A A ALA ALA 42 148 H H 4 SEQCRD A V VAL VAL 43 149 H H 4 SEQCRD A I ILE ILE 44 150 H H 4 SEQCRD A L LEU LEU 45 151 H H 4 SEQCRD A P PRO PRO 46 152 H H 4 SEQCRD A V VAL VAL 47 153 H H 4 SEQCRD A K LYS LYS 48 154 H T 45 SEQCRD A F PHE PHE 49 155 H T 45 SEQCRD A P PRO PRO 50 156 H T 45 SEQCRD A H HIS HIS 51 157 H T 45 SEQCRD A L LEU LEU 52 158 H T 45 SEQCRD A F PHE PHE 53 159 H T 45 SEQCRD A K LYS LYS 54 160 C T 45 SEQCRD A G GLY GLY 55 161 C T 45 SEQCRD A N ASN ASN 56 162 C T 45 SEQCRD A R ARG ARG 57 163 C T 45 SEQCRD A K LYS LYS 58 164 C C 4 SEQCRD A P PRO PRO 59 165 C C 4 SEQCRD A T THR THR 60 166 C C 4 SEQCRD A S SER SER 61 167 C C 4 SEQCRD A G GLY GLY 62 168 E E 4 SEQCRD A I ILE ILE 63 169 E E 4 SEQCRD A L LEU LEU 64 170 E E 4 SEQCRD A L LEU LEU 65 171 E E 4 SEQCRD A Y TYR TYR 66 172 E E 4 SEQCRD A G GLY GLY 67 173 C C 4 SEQCRD A P PRO PRO 68 174 C T 45 SEQCRD A P PRO PRO 69 175 C T 45 SEQCRD A G GLY GLY 70 176 C T 45 SEQCRD A T THR THR 71 177 C T 45 SEQCRD A G GLY GLY 72 178 H C 45 SEQCRD A K LYS LYS 73 179 H H 4 SEQCRD A S SER SER 74 180 H H 4 SEQCRD A Y TYR TYR 75 181 H H 4 SEQCRD A L LEU LEU 76 182 H H 4 SEQCRD A A ALA ALA 77 183 H H 4 SEQCRD A K LYS LYS 78 184 H H 4 SEQCRD A A ALA ALA 79 185 H H 4 SEQCRD A V VAL VAL 80 186 H H 4 SEQCRD A A ALA ALA 81 187 H H 4 SEQCRD A T THR THR 82 188 H H 4 SEQCRD A E GLU GLU 83 189 H H 4 SEQCRD A A ALA ALA 84 190 H H 4 SEQCRD A N ASN ASN 85 191 C C 4 SEQCRD A S SER SER 86 192 C C 4 SEQCRD A T THR THR 87 193 E E 4 SEQCRD A F PHE PHE 88 194 E E 4 SEQCRD A F PHE PHE 89 195 E E 4 SEQCRD A S SER SER 90 196 E E 4 SEQCRD A V VAL VAL 91 197 E E 4 SEQCRD A S SER SER 92 198 E E 4 SEQCRD A S SER SER 93 199 H H 4 SEQCRD A S SER SER 94 200 H H 4 SEQCRD A D ASP ASP 95 201 H H 4 SEQCRD A L LEU LEU 96 202 H H 4 SEQCRD A V VAL VAL 97 203 H H 4 SEQCRD A S SER SER 98 204 H H 4 SEQCRD A K LYS --- 99 - - - 367 SEQCRD A W TRP --- 100 - - - 367 SEQCRD A M MET --- 101 - - - 367 SEQCRD A G GLY GLY 102 208 C C 4 SEQCRD A E GLU GLU 103 209 C C 4 SEQCRD A S SER SER 104 210 H H 4 SEQCRD A E GLU GLU 105 211 H H 4 SEQCRD A K LYS LYS 106 212 H H 4 SEQCRD A L LEU LEU 107 213 H H 4 SEQCRD A V VAL VAL 108 214 H H 4 SEQCRD A K LYS LYS 109 215 H H 4 SEQCRD A Q GLN GLN 110 216 H H 4 SEQCRD A L LEU LEU 111 217 H H 4 SEQCRD A F PHE PHE 112 218 H H 4 SEQCRD A A ALA ALA 113 219 H H 4 SEQCRD A M MET MET 114 220 H H 4 SEQCRD A A ALA ALA 115 221 H H 4 SEQCRD A R ARG ARG 116 222 H H 4 SEQCRD A E GLU GLU 117 223 H H 4 SEQCRD A N ASN ASN 118 224 C T 45 SEQCRD A K LYS LYS 119 225 C T 45 SEQCRD A P PRO PRO 120 226 C T 45 SEQCRD A S SER SER 121 227 E E 4 SEQCRD A I ILE ILE 122 228 E E 4 SEQCRD A I ILE ILE 123 229 E E 4 SEQCRD A F PHE PHE 124 230 E E 4 SEQCRD A I ILE ILE 125 231 E E 4 SEQCRD A D ASP ASP 126 232 E E 4 SEQCRD A E GLU GLU 127 233 H T 45 SEQCRD A V VAL VAL 128 234 H G 45 SEQCRD A D ASP ASP 129 235 H G 45 SEQCRD A A ALA ALA 130 236 H G 45 SEQCRD A L LEU LEU 131 237 H T 45 SEQCRD A T THR THR 132 238 H T 45 SEQCRD A G GLY --- 133 - - - 367 SEQCRD A T THR --- 134 - - - 367 SEQCRD A R ARG --- 135 - - - 367 SEQCRD A G GLY --- 136 - - - 367 SEQCRD A E GLU --- 137 - - - 367 SEQCRD A G GLY --- 138 - - - 367 SEQCRD A E GLU --- 139 - - - 367 SEQCRD A S SER --- 140 - - - 367 SEQCRD A E GLU --- 141 - - - 367 SEQCRD A A ALA ALA 142 248 C T 45 SEQCRD A S SER SER 143 249 H T 45 SEQCRD A R ARG ARG 144 250 H H 4 SEQCRD A R ARG ARG 145 251 H H 4 SEQCRD A I ILE ILE 146 252 H H 4 SEQCRD A K LYS LYS 147 253 H H 4 SEQCRD A T THR THR 148 254 H H 4 SEQCRD A E GLU GLU 149 255 H H 4 SEQCRD A L LEU LEU 150 256 H H 4 SEQCRD A L LEU LEU 151 257 H H 4 SEQCRD A V VAL VAL 152 258 H H 4 SEQCRD A Q GLN GLN 153 259 H H 4 SEQCRD A M MET MET 154 260 H H 4 SEQCRD A N ASN ASN 155 261 H T 45 SEQCRD A G GLY GLY 156 262 C T 45 SEQCRD A V VAL VAL 157 263 C T 45 SEQCRD A G GLY --- 158 - - - 367 SEQCRD A N ASN --- 159 - - - 367 SEQCRD A D ASP --- 160 - - - 367 SEQCRD A S SER --- 161 - - - 367 SEQCRD A Q GLN GLN 162 268 C T 45 SEQCRD A G GLY GLY 163 269 C T 45 SEQCRD A V VAL VAL 164 270 E E 4 SEQCRD A L LEU LEU 165 271 E E 4 SEQCRD A V VAL VAL 166 272 E E 4 SEQCRD A L LEU LEU 167 273 E E 4 SEQCRD A G GLY GLY 168 274 E E 4 SEQCRD A A ALA ALA 169 275 E E 4 SEQCRD A T THR THR 170 276 E E 4 SEQCRD A N ASN ASN 171 277 C T 45 SEQCRD A I ILE ILE 172 278 H T 45 SEQCRD A P PRO PRO 173 279 H G 45 SEQCRD A W TRP TRP 174 280 H G 45 SEQCRD A Q GLN GLN 175 281 H G 45 SEQCRD A L LEU LEU 176 282 H C 45 SEQCRD A D ASP ASP 177 283 H C 45 SEQCRD A S SER SER 178 284 H H 4 SEQCRD A A ALA ALA 179 285 H H 4 SEQCRD A I ILE ILE 180 286 H H 4 SEQCRD A R ARG ARG 181 287 H H 4 SEQCRD A R ARG ARG 182 288 H H 4 SEQCRD A R ARG ARG 183 289 H H 4 SEQCRD A F PHE PHE 184 290 H T 45 SEQCRD A E GLU GLU 185 291 C T 45 SEQCRD A R ARG ARG 186 292 E E 4 SEQCRD A R ARG ARG 187 293 E E 4 SEQCRD A I ILE ILE 188 294 E E 4 SEQCRD A Y TYR TYR 189 295 E E 4 SEQCRD A I ILE ILE 190 296 C C 4 SEQCRD A P PRO PRO 191 297 C C 4 SEQCRD A L LEU LEU 192 298 C C 4 SEQCRD A P PRO PRO 193 299 C C 4 SEQCRD A D ASP ASP 194 300 C C 4 SEQCRD A L LEU LEU 195 301 C C 4 SEQCRD A A ALA ALA 196 302 H H 4 SEQCRD A A ALA ALA 197 303 H H 4 SEQCRD A R ARG ARG 198 304 H H 4 SEQCRD A T THR THR 199 305 H H 4 SEQCRD A T THR THR 200 306 H H 4 SEQCRD A M MET MET 201 307 H H 4 SEQCRD A F PHE PHE 202 308 H H 4 SEQCRD A E GLU GLU 203 309 H H 4 SEQCRD A I ILE ILE 204 310 H H 4 SEQCRD A N ASN ASN 205 311 H H 4 SEQCRD A V VAL VAL 206 312 C T 45 SEQCRD A G GLY GLY 207 313 C T 45 SEQCRD A D ASP ASP 208 314 C T 45 SEQCRD A T THR THR 209 315 C T 45 SEQCRD A P PRO PRO 210 316 C C 4 SEQCRD A C CYS CYS 211 317 C C 4 SEQCRD A V VAL VAL 212 318 C C 4 SEQCRD A L LEU LEU 213 319 C C 4 SEQCRD A T THR THR 214 320 H C 45 SEQCRD A K LYS LYS 215 321 H H 4 SEQCRD A E GLU GLU 216 322 H H 4 SEQCRD A D ASP ASP 217 323 H H 4 SEQCRD A Y TYR TYR 218 324 H H 4 SEQCRD A R ARG ARG 219 325 H H 4 SEQCRD A T THR THR 220 326 H H 4 SEQCRD A L LEU LEU 221 327 H H 4 SEQCRD A G GLY GLY 222 328 H H 4 SEQCRD A A ALA ALA 223 329 H H 4 SEQCRD A M MET MET 224 330 H H 4 SEQCRD A T THR THR 225 331 C T 45 SEQCRD A E GLU GLU 226 332 C T 45 SEQCRD A G GLY GLY 227 333 C T 45 SEQCRD A Y TYR TYR 228 334 C T 45 SEQCRD A S SER SER 229 335 H C 45 SEQCRD A G GLY GLY 230 336 H H 4 SEQCRD A S SER SER 231 337 H H 4 SEQCRD A D ASP ASP 232 338 H H 4 SEQCRD A I ILE ILE 233 339 H H 4 SEQCRD A A ALA ALA 234 340 H H 4 SEQCRD A V VAL VAL 235 341 H H 4 SEQCRD A V VAL VAL 236 342 H H 4 SEQCRD A V VAL VAL 237 343 H H 4 SEQCRD A K LYS LYS 238 344 H H 4 SEQCRD A D ASP ASP 239 345 H H 4 SEQCRD A A ALA ALA 240 346 H H 4 SEQCRD A L LEU LEU 241 347 H H 4 SEQCRD A M MET MET 242 348 H H 4 SEQCRD A Q GLN GLN 243 349 H H 4 SEQCRD A P PRO PRO 244 350 H H 4 SEQCRD A I ILE ILE 245 351 H H 4 SEQCRD A R ARG ARG 246 352 H H 4 SEQCRD A K LYS LYS 247 353 H H 4 SEQCRD A I ILE ILE 248 354 H H 4 SEQCRD A Q GLN GLN 249 355 H H 4 SEQCRD A S SER SER 250 356 H C 45 SEQCRD A A ALA ALA 251 357 C C 4 SEQCRD A T THR THR 252 358 C C 4 SEQCRD A H HIS HIS 253 359 E E 4 SEQCRD A F PHE PHE 254 360 E E 4 SEQCRD A K LYS LYS 255 361 E E 4 SEQCRD A D ASP ASP 256 362 C T 45 SEQCRD A V VAL VAL 257 363 C T 45 SEQCRD A S SER --- 258 - - - 367 SEQCRD A T THR --- 259 - - - 367 SEQCRD A E GLU --- 260 - - - 367 SEQCRD A D ASP --- 261 - - - 367 SEQCRD A D ASP --- 262 - - - 367 SEQCRD A E GLU --- 263 - - - 367 SEQCRD A T THR --- 264 - - - 367 SEQCRD A R ARG --- 265 - - - 367 SEQCRD A K LYS --- 266 - - - 367 SEQCRD A L LEU LEU 267 373 C B 45 SEQCRD A T THR THR 268 374 E E 4 SEQCRD A P PRO PRO 269 375 E E 4 SEQCRD A C CYS CYS 270 376 E E 4 SEQCRD A S SER SER 271 377 C T 45 SEQCRD A P PRO PRO 272 378 C T 45 SEQCRD A G GLY GLY 273 379 C T 45 SEQCRD A D ASP ASP 274 380 C T 45 SEQCRD A D ASP ASP 275 381 C T 45 SEQCRD A G GLY GLY 276 382 C T 45 SEQCRD A A ALA ALA 277 383 C T 45 SEQCRD A I ILE ILE 278 384 E E 4 SEQCRD A E GLU GLU 279 385 E E 4 SEQCRD A M MET MET 280 386 C C 4 SEQCRD A S SER SER 281 387 C C 4 SEQCRD A W TRP TRP 282 388 C G 45 SEQCRD A T THR THR 283 389 C G 45 SEQCRD A D ASP ASP 284 390 C G 45 SEQCRD A I ILE ILE 285 391 C C 4 SEQCRD A E GLU GLU 286 392 C T 45 SEQCRD A A ALA ALA 287 393 C T 45 SEQCRD A D ASP ASP 288 394 C T 45 SEQCRD A E GLU GLU 289 395 C T 45 SEQCRD A L LEU LEU 290 396 C B 45 SEQCRD A K LYS LYS 291 397 C C 4 SEQCRD A E GLU GLU 292 398 C C 4 SEQCRD A P PRO PRO 293 399 C C 4 SEQCRD A D ASP ASP 294 400 C C 4 SEQCRD A L LEU LEU 295 401 C C 4 SEQCRD A T THR THR 296 402 H C 45 SEQCRD A I ILE ILE 297 403 H H 4 SEQCRD A K LYS LYS 298 404 H H 4 SEQCRD A D ASP ASP 299 405 H H 4 SEQCRD A F PHE PHE 300 406 H H 4 SEQCRD A L LEU LEU 301 407 H H 4 SEQCRD A K LYS LYS 302 408 H H 4 SEQCRD A A ALA ALA 303 409 H H 4 SEQCRD A I ILE ILE 304 410 H H 4 SEQCRD A K LYS LYS 305 411 H H 4 SEQCRD A S SER SER 306 412 H H 4 SEQCRD A T THR THR 307 413 C C 4 SEQCRD A R ARG ARG 308 414 C C 4 SEQCRD A P PRO PRO 309 415 C C 4 SEQCRD A T THR THR 310 416 C C 4 SEQCRD A V VAL VAL 311 417 C C 4 SEQCRD A N ASN ASN 312 418 H C 45 SEQCRD A E GLU GLU 313 419 H H 4 SEQCRD A D ASP ASP 314 420 H H 4 SEQCRD A D ASP ASP 315 421 H H 4 SEQCRD A L LEU LEU 316 422 H H 4 SEQCRD A L LEU LEU 317 423 H H 4 SEQCRD A K LYS LYS 318 424 H H 4 SEQCRD A Q GLN GLN 319 425 H H 4 SEQCRD A E GLU GLU 320 426 H H 4 SEQCRD A Q GLN GLN 321 427 H H 4 SEQCRD A F PHE PHE 322 428 H H 4 SEQCRD A T THR THR 323 429 H H 4 SEQCRD A R ARG ARG 324 430 H H 4 SEQCRD A D ASP ASP 325 431 H H 4 SEQCRD A F PHE PHE 326 432 H H 4 SEQCRD A G GLY GLY 327 433 H C 45 SEQCRD A Q GLN --- 328 - - - 367 SEQCRD A E GLU --- 329 - - - 367 SEQCRD A G GLY --- 330 - - - 367 SEQCRD A N ASN --- 331 - - - 367 COMMNT S2CERR 1 0 No standard amino acid code S2CERR 2 0 SEQRES and ATOM residue names differ S2CERR 3 51 No ATOM record S2CERR 4 280 SEQRES and ATOM residue numbers differ S2CERR 5 82 PDB and STRIDE secondary structures differ S2CERR 6 51 PDB secondary structure is absent S2CERR 7 51 STRIDE secondary structure is absent COMMNT COMMNT Crystallographic technical parameters: PARAME method 'X-RAY DIFFRACTION' PARAME resolution 3.350 PARAME R-factor 0.270 PARAME B-factor 88.089 COMMNT COMMNT Reference database information: DATABA source: DATABA UNP: VPS4_YEAST (P52917) COMMNT DATABA mutation: DATABA VAL A 13 --> ? ? 'EXPRESSION TAG' DATABA HIS A 6 --> ? ? 'EXPRESSION TAG' DATABA PRO A 14 --> ? ? 'EXPRESSION TAG' DATABA GLY A 2 --> ? ? 'EXPRESSION TAG' DATABA HIS A 8 --> ? ? 'EXPRESSION TAG' DATABA ARG A 15 --> ? ? 'EXPRESSION TAG' DATABA LEU A 12 --> ? ? 'EXPRESSION TAG' DATABA SER A 17 --> ? ? 'EXPRESSION TAG' DATABA HIS A 4 --> ? ? 'EXPRESSION TAG' DATABA HIS A 5 --> ? ? 'EXPRESSION TAG' DATABA SER A 9 --> ? ? 'EXPRESSION TAG' DATABA HIS A 7 --> ? ? 'EXPRESSION TAG' DATABA GLY A 11 --> ? ? 'EXPRESSION TAG' DATABA MET A 1 --> ? ? 'EXPRESSION TAG' DATABA ARG A 10 --> ? ? 'EXPRESSION TAG' DATABA GLY A 16 --> ? ? 'EXPRESSION TAG' DATABA HIS A 3 --> ? ? 'EXPRESSION TAG'