HEADSC 2yd5 COMMNT S2C correlation file created: Sat Apr 16 06:01:44 EDT 2011 COMMNT COMMNT If you use this database, please cite: COMMNT COMMNT Guoli Wang, Jonathan W. Arthur, and Roland L. Dunbrack, Jr. COMMNT "S2C: A database correlating sequence and atomic COMMNT coordinate numbering in the Protein Data Bank" COMMNT dunbrack.fccc.edu/Guoli/s2c COMMNT Copyright (c) February 2000, April 2002. COMMNT COMMNT SEQCRD columns are as follows: COMMNT COMMNT Column Positions Item COMMNT 1 0-6 Record identifier COMMNT 2 8 Chain COMMNT 3 10 One letter residue code COMMNT 4 12-14 SEQRES three letter residue code COMMNT 5 16-18 ATOM three letter residue code COMMNT 6 20-24 SEQRES residue number COMMNT 7 26-31 ATOM residue number COMMNT 8 33 PDB secondary structure COMMNT 9 35 STRIDE secondary structure COMMNT 10 37-43 Error flags COMMNT COMMNT Secondary structrue annotation: COMMNT H: Helix E: Strand T: Turn COMMNT B: Bridge G: 310Helix C: Coil COMMNT SEQCRD A E GLU --- 1 - - - 367 SEQCRD A T THR --- 2 - - - 367 SEQCRD A G GLY --- 3 - - - 367 SEQCRD A D ASP ASP 4 30 C C 4 SEQCRD A S SER SER 5 31 E E 4 SEQCRD A K LYS LYS 6 32 E E 4 SEQCRD A P PRO PRO 7 33 E E 4 SEQCRD A V VAL VAL 8 34 E E 4 SEQCRD A F PHE PHE 9 35 E E 4 SEQCRD A I ILE ILE 10 36 E E 4 SEQCRD A K LYS LYS 11 37 E E 4 SEQCRD A V VAL VAL 12 38 C T 45 SEQCRD A P PRO PRO 13 39 C C 4 SEQCRD A E GLU GLU 14 40 C C 4 SEQCRD A D ASP ASP 15 41 C C 4 SEQCRD A Q GLN GLN 16 42 E E 4 SEQCRD A T THR THR 17 43 E E 4 SEQCRD A G GLY GLY 18 44 E E 4 SEQCRD A L LEU LEU 19 45 E E 4 SEQCRD A S SER SER 20 46 C T 45 SEQCRD A G GLY GLY 21 47 C T 45 SEQCRD A G GLY GLY 22 48 C b 45 SEQCRD A V VAL VAL 23 49 C C 4 SEQCRD A A ALA ALA 24 50 E E 4 SEQCRD A S SER SER 25 51 E E 4 SEQCRD A F PHE PHE 26 52 E E 4 SEQCRD A V VAL VAL 27 53 E E 4 SEQCRD A C CYS CYS 28 54 E E 4 SEQCRD A Q GLN GLN 29 55 E E 4 SEQCRD A A ALA ALA 30 56 E E 4 SEQCRD A T THR THR 31 57 E E 4 SEQCRD A G GLY GLY 32 58 E E 4 SEQCRD A E GLU GLU 33 59 E E 4 SEQCRD A P PRO PRO 34 60 C T 45 SEQCRD A K LYS LYS 35 61 C T 45 SEQCRD A P PRO PRO 36 62 C C 4 SEQCRD A R ARG ARG 37 63 E E 4 SEQCRD A I ILE ILE 38 64 E E 4 SEQCRD A T THR THR 39 65 E E 4 SEQCRD A W TRP TRP 40 66 E E 4 SEQCRD A M MET MET 41 67 E E 4 SEQCRD A K LYS LYS 42 68 E E 4 SEQCRD A K LYS LYS 43 69 C T 45 SEQCRD A G GLY GLY 44 70 C T 45 SEQCRD A K LYS LYS 45 71 E E 4 SEQCRD A K LYS LYS 46 72 E E 4 SEQCRD A V VAL VAL 47 73 C C 4 SEQCRD A S SER SER 48 74 C C 4 SEQCRD A S SER SER 49 75 C B 45 SEQCRD A Q GLN GLN 50 76 C T 45 SEQCRD A R ARG ARG 51 77 C T 45 SEQCRD A F PHE PHE 52 78 E E 4 SEQCRD A E GLU GLU 53 79 E E 4 SEQCRD A V VAL VAL 54 80 E E 4 SEQCRD A I ILE ILE 55 81 E E 4 SEQCRD A E GLU GLU 56 82 E E 4 SEQCRD A F PHE PHE 57 83 E E 4 SEQCRD A D ASP ASP 58 84 H G 45 SEQCRD A D ASP ASP 59 85 H G 45 SEQCRD A G GLY GLY 60 86 H G 45 SEQCRD A A ALA ALA 61 87 C T 45 SEQCRD A G GLY GLY 62 88 E E 4 SEQCRD A S SER SER 63 89 E E 4 SEQCRD A V VAL VAL 64 90 E E 4 SEQCRD A L LEU LEU 65 91 E E 4 SEQCRD A R ARG ARG 66 92 E E 4 SEQCRD A I ILE ILE 67 93 E E 4 SEQCRD A Q GLN GLN 68 94 C T 45 SEQCRD A P PRO PRO 69 95 C T 45 SEQCRD A L LEU LEU 70 96 C b 45 SEQCRD A R ARG ARG 71 97 H C 45 SEQCRD A V VAL VAL 72 98 H H 4 SEQCRD A Q GLN GLN 73 99 H H 4 SEQCRD A R ARG ARG 74 100 H H 4 SEQCRD A D ASP ASP 75 101 H H 4 SEQCRD A E GLU GLU 76 102 H C 45 SEQCRD A A ALA ALA 77 103 E E 4 SEQCRD A I ILE ILE 78 104 E E 4 SEQCRD A Y TYR TYR 79 105 E E 4 SEQCRD A E GLU GLU 80 106 E E 4 SEQCRD A C CYS CYS 81 107 E E 4 SEQCRD A T THR THR 82 108 E E 4 SEQCRD A A ALA ALA 83 109 E E 4 SEQCRD A T THR THR 84 110 E E 4 SEQCRD A N ASN ASN 85 111 E E 4 SEQCRD A S SER SER 86 112 C T 45 SEQCRD A L LEU LEU 87 113 C T 45 SEQCRD A G GLY GLY 88 114 E E 4 SEQCRD A E GLU GLU 89 115 E E 4 SEQCRD A I ILE ILE 90 116 E E 4 SEQCRD A N ASN ASN 91 117 E E 4 SEQCRD A T THR THR 92 118 E E 4 SEQCRD A S SER SER 93 119 E E 4 SEQCRD A A ALA ALA 94 120 E E 4 SEQCRD A K LYS LYS 95 121 E E 4 SEQCRD A L LEU LEU 96 122 E E 4 SEQCRD A S SER SER 97 123 E E 4 SEQCRD A V VAL VAL 98 124 E E 4 SEQCRD A L LEU LEU 99 125 E E 4 SEQCRD A E GLU GLU 100 126 H C 45 SEQCRD A E GLU GLU 101 127 H G 45 SEQCRD A E GLU GLU 102 128 H G 45 SEQCRD A Q GLN GLN 103 129 H G 45 SEQCRD A L LEU LEU 104 130 H C 45 SEQCRD A P PRO PRO 105 131 C T 45 SEQCRD A P PRO PRO 106 132 C T 45 SEQCRD A G GLY GLY 107 133 C T 45 SEQCRD A F PHE PHE 108 134 C T 45 SEQCRD A P PRO PRO 109 135 C C 4 SEQCRD A S SER SER 110 136 E E 4 SEQCRD A I ILE ILE 111 137 E E 4 SEQCRD A D ASP ASP 112 138 E E 4 SEQCRD A M MET MET 113 139 E E 4 SEQCRD A G GLY GLY 114 140 C T 45 SEQCRD A P PRO PRO 115 141 C C 4 SEQCRD A Q GLN GLN 116 142 C C 4 SEQCRD A L LEU LEU 117 143 C C 4 SEQCRD A K LYS LYS 118 144 E E 4 SEQCRD A V VAL VAL 119 145 E E 4 SEQCRD A V VAL VAL 120 146 E E 4 SEQCRD A E GLU GLU 121 147 E E 4 SEQCRD A K LYS LYS 122 148 C T 45 SEQCRD A A ALA ALA 123 149 C T 45 SEQCRD A R ARG ARG 124 150 C b 45 SEQCRD A T THR THR 125 151 C C 4 SEQCRD A A ALA ALA 126 152 E E 4 SEQCRD A T THR THR 127 153 E E 4 SEQCRD A M MET MET 128 154 E E 4 SEQCRD A L LEU LEU 129 155 C C 4 SEQCRD A C CYS CYS 130 156 C C 4 SEQCRD A A ALA ALA 131 157 E E 4 SEQCRD A A ALA ALA 132 158 E E 4 SEQCRD A G GLY GLY 133 159 E E 4 SEQCRD A G GLY GLY 134 160 C T 45 SEQCRD A N ASN ASN 135 161 C T 45 SEQCRD A P PRO PRO 136 162 C T 45 SEQCRD A D ASP ASP 137 163 C T 45 SEQCRD A P PRO PRO 138 164 C C 4 SEQCRD A E GLU GLU 139 165 E E 4 SEQCRD A I ILE ILE 140 166 E E 4 SEQCRD A S SER SER 141 167 E E 4 SEQCRD A W TRP TRP 142 168 E E 4 SEQCRD A F PHE PHE 143 169 E E 4 SEQCRD A K LYS LYS 144 170 E E 4 SEQCRD A D ASP ASP 145 171 C T 45 SEQCRD A F PHE PHE 146 172 C T 45 SEQCRD A L LEU LEU 147 173 E E 4 SEQCRD A P PRO PRO 148 174 E E 4 SEQCRD A V VAL VAL 149 175 C E 45 SEQCRD A D ASP ASP 150 176 H C 45 SEQCRD A P PRO PRO 151 177 H G 45 SEQCRD A A ALA ALA 152 178 H G 45 SEQCRD A T THR THR 153 179 H G 45 SEQCRD A S SER SER 154 180 H T 45 SEQCRD A N ASN ASN 155 181 C T 45 SEQCRD A G GLY GLY 156 182 C T 45 SEQCRD A R ARG ARG 157 183 C T 45 SEQCRD A I ILE ILE 158 184 E E 4 SEQCRD A K LYS LYS 159 185 E E 4 SEQCRD A Q GLN GLN 160 186 E E 4 SEQCRD A L LEU LEU 161 187 C T 45 SEQCRD A R ARG ARG 162 188 C T 45 SEQCRD A S SER SER 163 189 C T 45 SEQCRD A G GLY GLY 164 190 C T 45 SEQCRD A A ALA ALA 165 191 C C 4 SEQCRD A L LEU LEU 166 192 E E 4 SEQCRD A Q GLN GLN 167 193 E E 4 SEQCRD A I ILE ILE 168 194 E E 4 SEQCRD A E GLU GLU 169 195 C T 45 SEQCRD A S SER SER 170 196 C T 45 SEQCRD A S SER SER 171 197 C b 45 SEQCRD A E GLU GLU 172 198 H C 45 SEQCRD A E GLU GLU 173 199 H G 45 SEQCRD A S SER SER 174 200 H G 45 SEQCRD A D ASP ASP 175 201 H G 45 SEQCRD A Q GLN GLN 176 202 H C 45 SEQCRD A G GLY GLY 177 203 E E 4 SEQCRD A K LYS LYS 178 204 E E 4 SEQCRD A Y TYR TYR 179 205 E E 4 SEQCRD A E GLU GLU 180 206 E E 4 SEQCRD A C CYS CYS 181 207 E E 4 SEQCRD A V VAL VAL 182 208 E E 4 SEQCRD A A ALA ALA 183 209 E E 4 SEQCRD A T THR THR 184 210 E E 4 SEQCRD A N ASN ASN 185 211 C E 45 SEQCRD A S SER SER 186 212 C T 45 SEQCRD A A ALA ALA 187 213 C T 45 SEQCRD A G GLY GLY 188 214 C E 45 SEQCRD A T THR THR 189 215 E E 4 SEQCRD A R ARG ARG 190 216 E E 4 SEQCRD A Y TYR TYR 191 217 E E 4 SEQCRD A S SER SER 192 218 C C 4 SEQCRD A A ALA ALA 193 219 C C 4 SEQCRD A P PRO PRO 194 220 C C 4 SEQCRD A A ALA ALA 195 221 E E 4 SEQCRD A N ASN ASN 196 222 E E 4 SEQCRD A L LEU LEU 197 223 E E 4 SEQCRD A Y TYR TYR 198 224 E E 4 SEQCRD A V VAL VAL 199 225 E E 4 SEQCRD A R ARG ARG 200 226 E E 4 SEQCRD A V VAL VAL 201 227 C C 4 SEQCRD A R ARG ARG 202 228 C C 4 SEQCRD A R ARG --- 203 - - - 367 SEQCRD A V VAL --- 204 - - - 367 SEQCRD A A ALA --- 205 - - - 367 SEQCRD A G GLY --- 206 - - - 367 SEQCRD A T THR --- 207 - - - 367 SEQCRD A K LYS --- 208 - - - 367 SEQCRD A H HIS --- 209 - - - 367 SEQCRD A H HIS --- 210 - - - 367 SEQCRD A H HIS --- 211 - - - 367 SEQCRD A H HIS --- 212 - - - 367 SEQCRD A H HIS --- 213 - - - 367 SEQCRD A H HIS --- 214 - - - 367 COMMNT S2CERR 1 0 No standard amino acid code S2CERR 2 0 SEQRES and ATOM residue names differ S2CERR 3 15 No ATOM record S2CERR 4 199 SEQRES and ATOM residue numbers differ S2CERR 5 66 PDB and STRIDE secondary structures differ S2CERR 6 15 PDB secondary structure is absent S2CERR 7 15 STRIDE secondary structure is absent COMMNT COMMNT Crystallographic technical parameters: PARAME method 'X-RAY DIFFRACTION' PARAME resolution 2.200 PARAME R-factor 0.1973 PARAME B-factor 39.13 COMMNT COMMNT Reference database information: DATABA source: DATABA UNP: PTPRF_HUMAN (P10586) COMMNT DATABA mutation: DATABA THR A 2 --> ? ? 'EXPRESSION TAG' DATABA HIS A 209 --> ? ? 'EXPRESSION TAG' DATABA GLY A 206 --> ? ? 'EXPRESSION TAG' DATABA HIS A 211 --> ? ? 'EXPRESSION TAG' DATABA HIS A 213 --> ? ? 'EXPRESSION TAG' DATABA HIS A 214 --> ? ? 'EXPRESSION TAG' DATABA THR A 207 --> ? ? 'EXPRESSION TAG' DATABA HIS A 212 --> ? ? 'EXPRESSION TAG' DATABA LYS A 208 --> ? ? 'EXPRESSION TAG' DATABA GLU A 1 --> ? ? 'EXPRESSION TAG' DATABA HIS A 210 --> ? ? 'EXPRESSION TAG'